Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002119

Physical Location & Seq

Genomic Coordinates Forward (+)

14070694 .. 14078808

Gene Structure 8115 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00092520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGTATGCGGGTGTCCCGGACCGGAAAGTCCTTGTCCATGGAGAAAGTGAAACGACTTCGGTGAATTGGGCAGGAGAGGGCGGATTTCGGGAACCGGATGTGTTGGAATTGAACTGTACATCGCTAACAAAAACTTCTGATATTTTCGCTAAGATACTTGGTAAATACCAACCTCAAAAGAAAGCTAATGGCACTACCTCCCTGCAACTTCTTCAGAAATTATATTCTCAAAAGCCTCGGTCAGATGGGACTAAGATGATGTTGATAATAGCTGATGAGTTGGATTACTTAATCACTAAAGACCGGGCAGTGCTCCATGACCTTTTCATGCTCACAACATTCCCATTCTCAAGATGTATACTTTTAGGAGTAGCAAATGCAATCGACTTAGCTGATCATTTTGTTCCAAAACTTCAGTCATTAAATTGTAAGCCTATGGTTATAACTTTTCGGGCATACTCTAAGGATCAGATTCTCAAGATTCTCCAAGAGAGGCTTATGGCACTACCTTACACTGTTTTTCAACCACATGCATTGGAACTTTGTGCCAGAAAAGTTGCTGCTGCATCTGGATATATGAGGAAAGCTCTCTGTATTTCCAGGAGTGCAATTGAGATGCTGGAAGCAGAGTTGAGAGAATCTACTGACAAGTTAAATTCATCAACAGCAGAGAATCCATTCTCTGAGCAACAGACAGCTCCAGCTCTTGCTCTGGTGAAAAAACAGGAGATTGATATTGTGAGAATTGATCACATGGCCATTGCTTTGTCAAAGACATTCAAGTCACCAGTAGTGGATACCATACAATGTCTTCCTCAACATCAACAGATTATAATGTGCTCTGCTGCAAAGCATTTCCGTGGTGTGAAGAAAGATACAACTATAGGAGAGTTAAACAAATCTTACATAGACATCTGCAAAGCAACACTAATTCCCCCGGTTGGGAGTTTTGAATTTTCAAGTATGTGCAAAGTGCTAAATGACCAGGGCCTCCTCAAACTCAGTGGCCAATCCAGAGATATAAAATCCAAGAGAGTGACATTGAATGTAGATGAAGGGGACATCACATTTGCATTGCAGGGAATCCGGTTTTTTCGGACTTGTCTTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

370

Amino Acids

41.3

Weight (kDa)

8.79

Isoelectric Point (pI)

38.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cdc6-ORC-like_ATPase_lid	PF22606	153 - 210	3.9e-10	Cdc6/ORC-like, ATPase lid domain
WHD_Cdc6	PF09079	266 - 358	2.3e-20	CDC6, C terminal winged helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07270 AT1G07270 AT2G29680 AT2G29680
fragaria_vesca	FvH4_3g38340 FvH4_3g38340 FvH4_3g38340 FvH4_3g38340 FvH4_3g38340
malus_domestica	MD03G1072700.v1.1 MD11G1078800.v1.1
prunus_persica	Prupe.6G059500_v2.0.a1
pyrus_communis	pycom03g05890 pycom11g06590
rosa_chinensis	RchiOBHm_Chr2g0157131 RchiOBHm_Chr4g0399271 RchiOBHm_Chr5g0068951
rosa_laevigata	RLG00000020961 RLG00000036023
rosa_multiflora	Rmu_sc0001960.1_g000002 Rmu_sc0003822.1_g000023 Rmu_sc0010302.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011800 Rroxscaffold_1G00029470 Rroxscaffold_2G00092520
rosa_rugosa	Rorug01G0058900 Rorug01G0059000 Rorug01G0059100 Rorug01G0059200 Rorug05G0394800 Rorug07G0214100 Rorug07G0214200 Rorug07G0214300
rosa_samantha	Rh2BG537600 Rh2DG546400 Rh4AG092800 Rh4CG101200 Rh5BG470900 Rh5CG493400 Rh7BG347600
rosa_wichuraiana	Rw2G031040 Rw2G043260 Rw4G007640 Rw5G042190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	443, 833
AasI	GACNNNNNNGTC	2 cut(s)	26, 781
AccI	GTMKAC	1 cut(s)	358
AciI	CCGC	2 cut(s)	8, 81
AclWI	GGATC	1 cut(s)	474
AcoI	YGGCCR	2 cut(s)	756, 1006
AcsI	RAATTY	2 cut(s)	655, 953
AcuI	CTGAAG	2 cut(s)	197, 398
AfaI	GTAC	1 cut(s)	118
AfiI	CCNNNNNNNGG	2 cut(s)	941, 942
AgsI	TTSAA	6 cut(s)	112, 524, 781, 953, 960, 1045
AjnI	CCWGG	2 cut(s)	599, 984
AluBI	AGCT	6 cut(s)	185, 272, 392, 587, 698, 704
AluI	AGCT	6 cut(s)	185, 272, 392, 587, 698, 704
Alw21I	GWGCWC	2 cut(s)	315, 842
AlwI	GGATC	1 cut(s)	474
AoxI	GGCC	3 cut(s)	756, 988, 1006
ApeKI	GCWGC	3 cut(s)	560, 563, 845
ApoI	RAATTY	2 cut(s)	655, 953
ArsI	GACNNNNNNTTYG	4 cut(s)	401, 433, 1052, 1084
Asp700I	GAANNNNTTC	1 cut(s)	677
AspS9I	GGNCC	2 cut(s)	19, 988
AsuC2I	CCSGG	3 cut(s)	17, 305, 938
AsuHPI	GGTGA	3 cut(s)	73, 727, 777
AvaII	GGWCC	1 cut(s)	19
BalI	TGGCCA	2 cut(s)	758, 1008
BbsI	GAAGAC	1 cut(s)	803
Bbv12I	GWGCWC	2 cut(s)	315, 842
BbvI	GCAGC	3 cut(s)	547, 550, 832
BccI	CCATC	1 cut(s)	239
BciT130I	CCWGG	2 cut(s)	601, 986
BciVI	GTATCC	1 cut(s)	790
BclI	TGATCA	2 cut(s)	394, 748
BcnI	CCSGG	3 cut(s)	17, 305, 938
BfmI	CTRYAG	1 cut(s)	882
BfuI	GTATCC	1 cut(s)	790
BisI	GCNGC	3 cut(s)	561, 564, 846
BlsI	GCNGC	3 cut(s)	562, 565, 847
Bme1390I	CCNGG	5 cut(s)	17, 305, 601, 938, 986
Bme18I	GGWCC	1 cut(s)	19
BmgT120I	GGNCC	2 cut(s)	19, 988
BmiI	GGNNCC	1 cut(s)	93
BmrFI	CCNGG	5 cut(s)	17, 305, 601, 938, 986
BmsI	GCATC	2 cut(s)	575, 606
BpiI	GAAGAC	1 cut(s)	803
BplI	GAGNNNNNCTC	2 cut(s)	571, 603
BpmI	CTGGAG	1 cut(s)	684
BpuEI	CTTGAG	2 cut(s)	334, 461
BpuMI	CCSGG	3 cut(s)	17, 305, 938
BsaJI	CCNNGG	5 cut(s)	37, 236, 859, 936, 985
BsaWI	WCCGGW	3 cut(s)	21, 94, 1086
Bsc4I	CCNNNNNNNGG	2 cut(s)	941, 942
Bse1I	ACTGG	1 cut(s)	788
Bse3DI	GCAATG	2 cut(s)	759, 1073
BseBI	CCWGG	2 cut(s)	601, 986
BseDI	CCNNGG	5 cut(s)	37, 236, 859, 936, 985
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	2 cut(s)	941, 942
BseMI	GCAATG	2 cut(s)	759, 1073
BseMII	CTCAG	2 cut(s)	675, 1015
BseNI	ACTGG	1 cut(s)	788
BseRI	GAGGAG	1 cut(s)	983
BseXI	GCAGC	3 cut(s)	547, 550, 832
BshFI	GGCC	3 cut(s)	758, 990, 1008
BsiHKAI	GWGCWC	2 cut(s)	315, 842
BsiSI	CCGG	6 cut(s)	17, 22, 95, 304, 938, 1087
BslFI	GGGAC	2 cut(s)	262, 1073
BslI	CCNNNNNNNGG	2 cut(s)	941, 942
BsmFI	GGGAC	2 cut(s)	262, 1073
BsnI	GGCC	3 cut(s)	758, 990, 1008
Bsp1286I	GDGCHC	2 cut(s)	315, 842
Bsp1407I	TGTACA	1 cut(s)	116
Bsp143I	GATC	3 cut(s)	394, 466, 748
Bsp19I	CCATGG	1 cut(s)	37
BspACI	CCGC	2 cut(s)	8, 81
BspANI	GGCC	3 cut(s)	758, 990, 1008
BspCNI	CTCAG	2 cut(s)	676, 1014
BspLI	GGNNCC	1 cut(s)	93
BspPI	GGATC	1 cut(s)	474
BsrDI	GCAATG	2 cut(s)	759, 1073
BsrGI	TGTACA	1 cut(s)	116
BsrI	ACTGG	1 cut(s)	788
BssECI	CCNNGG	5 cut(s)	37, 236, 859, 936, 985
BssMI	GATC	3 cut(s)	394, 466, 748
BssNAI	GTATAC	1 cut(s)	359
BssT1I	CCWWGG	1 cut(s)	37
Bst1107I	GTATAC	1 cut(s)	359
Bst2UI	CCWGG	2 cut(s)	601, 986
Bst4CI	ACNGT	2 cut(s)	116, 517
BstAUI	TGTACA	1 cut(s)	116
BstDEI	CTNAG	6 cut(s)	150, 252, 388, 462, 684, 1001
BstDSI	CCRYGG	2 cut(s)	37, 859
BstF5I	GGATG	1 cut(s)	103
BstKTI	GATC	3 cut(s)	397, 469, 751
BstMBI	GATC	3 cut(s)	394, 466, 748
BstNI	CCWGG	2 cut(s)	601, 986
BstNSI	RCATGY	1 cut(s)	533
BstSCI	CCNGG	5 cut(s)	15, 303, 599, 936, 984
BstSFI	CTRYAG	1 cut(s)	882
BstV1I	GCAGC	3 cut(s)	547, 550, 832
BstV2I	GAAGAC	1 cut(s)	803
BstZ17I	GTATAC	1 cut(s)	359
BsuI	GTATCC	1 cut(s)	790
BsuRI	GGCC	3 cut(s)	758, 990, 1008
BtgI	CCRYGG	2 cut(s)	37, 859
BtgZI	GCGATG	1 cut(s)	105
BtsCI	GGATG	1 cut(s)	103
BtsI	GCAGTG	1 cut(s)	315
BtsIMutI	CAGTG	3 cut(s)	315, 513, 1009
Cfr13I	GGNCC	2 cut(s)	19, 988
CpoI	CGGWCCG	1 cut(s)	19
Csp6I	GTAC	1 cut(s)	117
CspCI	CAANNNNNGTGG	4 cut(s)	516, 551, 985, 1020
CspI	CGGWCCG	1 cut(s)	19
CviAII	CATG	5 cut(s)	38, 317, 328, 530, 754
CviQI	GTAC	1 cut(s)	117
DdeI	CTNAG	6 cut(s)	150, 252, 388, 462, 684, 1001
DpnI	GATC	3 cut(s)	396, 468, 750
DpnII	GATC	3 cut(s)	394, 466, 748
DrdI	GACNNNNNNGTC	2 cut(s)	26, 781
DseDI	GACNNNNNNGTC	2 cut(s)	26, 781
EaeI	YGGCCR	2 cut(s)	756, 1006
EciI	GGCGGA	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	19
Eco57I	CTGAAG	2 cut(s)	197, 398
EcoO109I	RGGNCCY	1 cut(s)	988
EcoRII	CCWGG	2 cut(s)	599, 984
EcoT14I	CCWWGG	1 cut(s)	37
EcoT22I	ATGCAT	1 cut(s)	535
ErhI	CCWWGG	1 cut(s)	37
FaeI	CATG	5 cut(s)	41, 320, 331, 533, 757
FalI	AAGNNNNNCTT	2 cut(s)	480, 512
FaqI	GGGAC	2 cut(s)	262, 1073
FatI	CATG	5 cut(s)	37, 316, 327, 529, 753
FbaI	TGATCA	2 cut(s)	394, 748
FblI	GTMKAC	1 cut(s)	358
Fnu4HI	GCNGC	3 cut(s)	561, 564, 846
FokI	GGATG	1 cut(s)	110
Fsp4HI	GCNGC	3 cut(s)	561, 564, 846
GluI	GCNGC	3 cut(s)	561, 564, 846
GsuI	CTGGAG	1 cut(s)	684
HaeIII	GGCC	3 cut(s)	758, 990, 1008
HapII	CCGG	6 cut(s)	17, 22, 95, 304, 938, 1087
Hin1II	CATG	5 cut(s)	41, 320, 331, 533, 757
HinfI	GANTC	5 cut(s)	472, 481, 638, 673, 1083
HpaII	CCGG	6 cut(s)	17, 22, 95, 304, 938, 1087
HphI	GGTGA	3 cut(s)	73, 727, 777
Hpy166II	GTNNAC	1 cut(s)	359
Hpy188I	TCNGA	6 cut(s)	139, 216, 244, 471, 685, 1098
Hpy188III	TCNNGA	6 cut(s)	89, 351, 478, 570, 1014, 1106
Hpy8I	GTNNAC	1 cut(s)	359
HpyAV	CCTTC	1 cut(s)	1049
HpyCH4III	ACNGT	2 cut(s)	116, 517
HpyF3I	CTNAG	6 cut(s)	150, 252, 388, 462, 684, 1001
Hsp92II	CATG	5 cut(s)	41, 320, 331, 533, 757
Ksp22I	TGATCA	2 cut(s)	394, 748
Kzo9I	GATC	3 cut(s)	394, 466, 748
LmnI	GCTCC	2 cut(s)	318, 703
Lsp1109I	GCAGC	3 cut(s)	547, 550, 832
LweI	GCATC	2 cut(s)	575, 606
MaeIII	GTNAC	2 cut(s)	783, 1036
MalI	GATC	3 cut(s)	396, 468, 750
MboI	GATC	3 cut(s)	394, 466, 748
MboII	GAAGA	3 cut(s)	203, 803, 880
MfeI	CAATTG	1 cut(s)	609
MhlI	GDGCHC	2 cut(s)	315, 842
MlsI	TGGCCA	2 cut(s)	758, 1008
MluCI	AATT	9 cut(s)	64, 107, 218, 424, 609, 655, 744, 930, 953
MluNI	TGGCCA	2 cut(s)	758, 1008
MmeI	TCCRAC	2 cut(s)	84, 261
MnlI	CCTC	9 cut(s)	70, 183, 208, 246, 486, 573, 825, 1001, 1004
Mox20I	TGGCCA	2 cut(s)	758, 1008
Mph1103I	ATGCAT	1 cut(s)	535
MroXI	GAANNNNTTC	1 cut(s)	677
MscI	TGGCCA	2 cut(s)	758, 1008
MseI	TTAA	4 cut(s)	290, 422, 653, 893
MslI	CAYNNNNRTG	1 cut(s)	858
Msp20I	TGGCCA	2 cut(s)	758, 1008
MspI	CCGG	6 cut(s)	17, 22, 95, 304, 938, 1087
MspR9I	CCNGG	5 cut(s)	17, 305, 601, 938, 986
MunI	CAATTG	1 cut(s)	609
MvaI	CCWGG	2 cut(s)	601, 986
NciI	CCSGG	3 cut(s)	17, 305, 938
NcoI	CCATGG	1 cut(s)	37
NdeII	GATC	3 cut(s)	394, 466, 748
NlaIII	CATG	5 cut(s)	41, 320, 331, 533, 757
NlaIV	GGNNCC	1 cut(s)	93
NmuCI	GTSAC	2 cut(s)	783, 1036
NsiI	ATGCAT	1 cut(s)	535
NspI	RCATGY	1 cut(s)	533
PdmI	GAANNNNTTC	1 cut(s)	677
PfeI	GAWTC	5 cut(s)	472, 481, 638, 673, 1083
PfoI	TCCNGGA	2 cut(s)	15, 599
PkrI	GCNGC	3 cut(s)	562, 565, 847
PsiI	TTATAA	2 cut(s)	443, 833
Psp6I	CCWGG	2 cut(s)	599, 984
PspGI	CCWGG	2 cut(s)	599, 984
PspN4I	GGNNCC	1 cut(s)	93
PspPI	GGNCC	2 cut(s)	19, 988
RsaI	GTAC	1 cut(s)	118
RsaNI	GTAC	1 cut(s)	117
RseI	CAYNNNNRTG	1 cut(s)	858
Rsr2I	CGGWCCG	1 cut(s)	19
RsrII	CGGWCCG	1 cut(s)	19
SaqAI	TTAA	4 cut(s)	290, 422, 653, 893
SatI	GCNGC	3 cut(s)	561, 564, 846
Sau3AI	GATC	3 cut(s)	394, 466, 748
Sau96I	GGNCC	2 cut(s)	19, 988
ScrFI	CCNGG	5 cut(s)	17, 305, 601, 938, 986
SduI	GDGCHC	2 cut(s)	315, 842
SfaNI	GCATC	2 cut(s)	575, 606
SfcI	CTRYAG	1 cut(s)	882
SinI	GGWCC	1 cut(s)	19
SmiMI	CAYNNNNRTG	1 cut(s)	858
SmlI	CTYRAG	3 cut(s)	349, 476, 1106
SmoI	CTYRAG	3 cut(s)	349, 476, 1106
Sse9I	AATT	9 cut(s)	64, 107, 218, 424, 609, 655, 744, 930, 953
SsiI	CCGC	2 cut(s)	8, 81
StyD4I	CCNGG	5 cut(s)	15, 303, 599, 936, 984
StyI	CCWWGG	1 cut(s)	37
TaaI	ACNGT	2 cut(s)	116, 517
TaqI	TCGA	1 cut(s)	384
TaqII	GACCGA	1 cut(s)	228
TasI	AATT	9 cut(s)	64, 107, 218, 424, 609, 655, 744, 930, 953
TatI	WGTACW	1 cut(s)	116
TfiI	GAWTC	5 cut(s)	472, 481, 638, 673, 1083
Tru1I	TTAA	4 cut(s)	290, 422, 653, 893
Tru9I	TTAA	4 cut(s)	290, 422, 653, 893
TscAI	CASTG	3 cut(s)	315, 520, 1009
TseFI	GTSAC	2 cut(s)	783, 1036
TseI	GCWGC	3 cut(s)	560, 563, 845
Tsp45I	GTSAC	2 cut(s)	783, 1036
TspDTI	ATGAA	3 cut(s)	316, 648, 1068
TspGWI	ACGGA	1 cut(s)	848
TspRI	CASTG	3 cut(s)	315, 520, 1009
VpaK11BI	GGWCC	1 cut(s)	19
XapI	RAATTY	2 cut(s)	655, 953
XceI	RCATGY	1 cut(s)	533
XmiI	GTMKAC	1 cut(s)	358
XmnI	GAANNNNTTC	1 cut(s)	677
Zsp2I	ATGCAT	1 cut(s)	535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.