Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002119

Physical Location & Seq

Genomic Coordinates Reverse (-)

19699790 .. 19704194

Gene Structure 4405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG092800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGAAGCTGAGTCCGATGAAATGCAAGCGCGTTGGAATTTCTTCTGTCGCGAAATTACACAACGTTGAGGTCGAATCAGAGAGGAGCGTGGAGGAGGTAGTCGGATCCGGCGGTGATTTGACTCCTCAGAAGCGGAAGTTGAGGTCCGATTCGTCGTCGCCGATGAAGTGTAAATCGGCTTGCCGGAACCTCAGTGCTTGCACCAGCACTCCTGCAAATGGAATTGAGAAGTATTTCAGTCAGAAAAAGCCTCAAGCCTTTTGCAAACCACCGATTGTTGCTAAGCCGAATTGGAATCCCAGAGATAAGGAGCAGATGAGGATAGTGAAGGAGGCATTGCACTTGTCTACGGTTCCCTCTACAGTTGCGTGCCGCGACGTGGAGCAGAAGAGGGTTTTGGAGTTCTGCAAGTCATGCATAGAGCAAGAGAAGGCCGGGAGTTTATATGTATGCGGGTGTCCTGGGACCGGAAAGTCCTTGTCCATGGAGAAAGTGAAACAGCTTTTGGTGAATTGGGCAGGAGAGGGTGGATTTCAGGAACCGGATGTTTTGGAATTGAACTGTACATCGCTAACAAAAACTTCTGATATTTTCGCTAAGATACTTGGTAAATACCAACCTCAAAAGAAAGCTAATGGCACTACCTCCCTGCAACTTCTTCAGAAATTATATTCTCAAAAGCCTCAGTCAGATGGGACTAAGATGATGTTGATAATAGCTGATGAGTTGGATTACTTAATCACTAAAGACCGGGCAGTGCTACATGACCTTTTCATGCTCACAACATACCCATTCTCAAGATGTATACTTTTAGGAGTAGCAAATGCAATGGACTTAGCTGATCGTTTTGTTCCAAAACTTCAGTCATTAAATTGTAAGCCTATGGTTATAACTTTTCGGGCATACTCTAAGGATCAGATTCTCAAGATTCTCCAAGAGAGGCTTATGGCACTACCTTACACTGTTTTTCAACCACATGCATTGGAACTTTGTGCCAGAAAAGTTGCTGCTGCATCTGGAGATATGAGGAAAGCTCTCTGTATTTCCAGGAGTGCAATTGAGATGCTGGAAGCAGAGTTGAGAGAATCTACTGACAAGTTAAATTCATCAACAGCAGAGAATCCATTCTCTGAGCAACAGACAGCTCCAGCTCTTGCTCTGGTGAAAAAACAGGAGATTGATATTATAGATATTGCAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

400

Amino Acids

44.35

Weight (kDa)

9.01

Isoelectric Point (pI)

49.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_22	PF13401	144 - 261	7.7e-13	AAA domain
Cdc6-ORC-like_ATPase_lid	PF22606	302 - 359	1.3e-11	Cdc6/ORC-like, ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07270 AT1G07270 AT2G29680 AT2G29680
fragaria_vesca	FvH4_3g38340 FvH4_3g38340 FvH4_3g38340 FvH4_3g38340 FvH4_3g38340
malus_domestica	MD03G1072700.v1.1 MD11G1078800.v1.1
prunus_persica	Prupe.6G059500_v2.0.a1
pyrus_communis	pycom03g05890 pycom11g06590
rosa_chinensis	RchiOBHm_Chr2g0157131 RchiOBHm_Chr4g0399271 RchiOBHm_Chr5g0068951
rosa_laevigata	RLG00000020961 RLG00000036023
rosa_multiflora	Rmu_sc0001960.1_g000002 Rmu_sc0003822.1_g000023 Rmu_sc0010302.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011800 Rroxscaffold_1G00029470 Rroxscaffold_2G00092520
rosa_rugosa	Rorug01G0058900 Rorug01G0059000 Rorug01G0059100 Rorug01G0059200 Rorug05G0394800 Rorug07G0214100 Rorug07G0214200 Rorug07G0214300
rosa_samantha	Rh2BG537600 Rh2DG546400 Rh4AG092800 Rh4CG101200 Rh5BG470900 Rh5CG493400 Rh7BG347600
rosa_wichuraiana	Rw2G031040 Rw2G043260 Rw4G007640 Rw5G042190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	890
AasI	GACNNNNNNGTC	1 cut(s)	472
AccI	GTMKAC	2 cut(s)	347, 805
AccII	CGCG	3 cut(s)	30, 50, 375
AciI	CCGC	4 cut(s)	111, 133, 373, 453
AclI	AACGTT	1 cut(s)	63
AclWI	GGATC	3 cut(s)	99, 112, 921
AcsI	RAATTY	2 cut(s)	36, 1102
AcuI	CTGAAG	2 cut(s)	644, 845
AfaI	GTAC	1 cut(s)	565
AfiI	CCNNNNNNNGG	3 cut(s)	218, 379, 467
AgsI	TTSAA	2 cut(s)	559, 971
AjiI	CACGTC	1 cut(s)	379
AjnI	CCWGG	2 cut(s)	460, 1046
AjuI	GAANNNNNNNTTGG	4 cut(s)	380, 412, 488, 520
AluBI	AGCT	8 cut(s)	7, 502, 632, 719, 839, 1034, 1145, 1151
AluI	AGCT	8 cut(s)	7, 502, 632, 719, 839, 1034, 1145, 1151
AlwI	GGATC	3 cut(s)	99, 112, 921
AoxI	GGCC	1 cut(s)	432
ApeKI	GCWGC	3 cut(s)	1007, 1010, 1196
ApoI	RAATTY	2 cut(s)	36, 1102
ArsI	GACNNNNNNTTYG	2 cut(s)	848, 880
Asp700I	GAANNNNTTC	3 cut(s)	40, 233, 1124
AspLEI	GCGC	1 cut(s)	30
AspS9I	GGNCC	2 cut(s)	144, 465
AsuC2I	CCSGG	2 cut(s)	436, 752
AsuHPI	GGTGA	3 cut(s)	125, 520, 1174
AvaII	GGWCC	2 cut(s)	144, 465
BamHI	GGATCC	1 cut(s)	104
BbvI	GCAGC	2 cut(s)	994, 997
BccI	CCATC	1 cut(s)	686
BciT130I	CCWGG	2 cut(s)	462, 1048
BcnI	CCSGG	2 cut(s)	436, 752
BfmI	CTRYAG	1 cut(s)	360
BisI	GCNGC	4 cut(s)	373, 1008, 1011, 1197
BlpI	GCTNAGC	1 cut(s)	282
BlsI	GCNGC	4 cut(s)	374, 1009, 1012, 1198
Bme1390I	CCNGG	4 cut(s)	436, 462, 752, 1048
Bme18I	GGWCC	2 cut(s)	144, 465
BmgBI	CACGTC	1 cut(s)	379
BmgT120I	GGNCC	2 cut(s)	144, 465
BmiI	GGNNCC	5 cut(s)	106, 188, 354, 466, 540
BmrFI	CCNGG	4 cut(s)	436, 462, 752, 1048
BmsI	GCATC	2 cut(s)	1022, 1053
BplI	GAGNNNNNCTC	2 cut(s)	1018, 1050
BpmI	CTGGAG	2 cut(s)	1038, 1131
Bpu1102I	GCTNAGC	1 cut(s)	282
BpuEI	CTTGAG	3 cut(s)	237, 781, 908
BpuMI	CCSGG	2 cut(s)	436, 752
BsaJI	CCNNGG	2 cut(s)	461, 483
BsaWI	WCCGGW	2 cut(s)	467, 541
BsaXI	ACNNNNNCTCC	2 cut(s)	193, 223
Bsc4I	CCNNNNNNNGG	3 cut(s)	218, 379, 467
Bse3DI	GCAATG	2 cut(s)	335, 834
BseBI	CCWGG	2 cut(s)	462, 1048
BseDI	CCNNGG	2 cut(s)	461, 483
BseGI	GGATG	1 cut(s)	550
BseLI	CCNNNNNNNGG	3 cut(s)	218, 379, 467
BseMI	GCAATG	2 cut(s)	335, 834
BseMII	CTCAG	4 cut(s)	140, 205, 698, 1122
BseRI	GAGGAG	3 cut(s)	97, 107, 114
BseXI	GCAGC	2 cut(s)	994, 997
Bsh1236I	CGCG	3 cut(s)	30, 50, 375
BshFI	GGCC	1 cut(s)	434
BsiSI	CCGG	6 cut(s)	108, 184, 435, 468, 542, 751
BslFI	GGGAC	2 cut(s)	478, 709
BslI	CCNNNNNNNGG	3 cut(s)	218, 379, 467
BsmFI	GGGAC	2 cut(s)	478, 709
BsnI	GGCC	1 cut(s)	434
Bsp1407I	TGTACA	1 cut(s)	563
Bsp143I	GATC	3 cut(s)	104, 841, 913
Bsp1720I	GCTNAGC	1 cut(s)	282
Bsp19I	CCATGG	1 cut(s)	483
Bsp68I	TCGCGA	1 cut(s)	50
BspACI	CCGC	4 cut(s)	111, 133, 373, 453
BspANI	GGCC	1 cut(s)	434
BspCNI	CTCAG	4 cut(s)	139, 204, 697, 1123
BspFNI	CGCG	3 cut(s)	30, 50, 375
BspLI	GGNNCC	5 cut(s)	106, 188, 354, 466, 540
BspPI	GGATC	3 cut(s)	99, 112, 921
BsrDI	GCAATG	2 cut(s)	335, 834
BsrGI	TGTACA	1 cut(s)	563
BssECI	CCNNGG	2 cut(s)	461, 483
BssMI	GATC	3 cut(s)	104, 841, 913
BssNAI	GTATAC	1 cut(s)	806
BssT1I	CCWWGG	1 cut(s)	483
Bst1107I	GTATAC	1 cut(s)	806
Bst2UI	CCWGG	2 cut(s)	462, 1048
Bst4CI	ACNGT	4 cut(s)	352, 364, 563, 964
Bst6I	CTCTTC	1 cut(s)	383
BstAPI	GCANNNNNTGC	1 cut(s)	414
BstAUI	TGTACA	1 cut(s)	563
BstC8I	GCNNGC	4 cut(s)	26, 181, 199, 370
BstDSI	CCRYGG	1 cut(s)	483
BstF5I	GGATG	1 cut(s)	550
BstFNI	CGCG	3 cut(s)	30, 50, 375
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	3 cut(s)	107, 844, 916
BstMBI	GATC	3 cut(s)	104, 841, 913
BstMWI	GCNNNNNNNGC	1 cut(s)	414
BstNI	CCWGG	2 cut(s)	462, 1048
BstNSI	RCATGY	1 cut(s)	980
BstSCI	CCNGG	4 cut(s)	434, 460, 750, 1046
BstSFI	CTRYAG	1 cut(s)	360
BstUI	CGCG	3 cut(s)	30, 50, 375
BstV1I	GCAGC	2 cut(s)	994, 997
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
BstZ17I	GTATAC	1 cut(s)	806
BsuRI	GGCC	1 cut(s)	434
BtgI	CCRYGG	1 cut(s)	483
BtgZI	GCGATG	1 cut(s)	552
BtrI	CACGTC	1 cut(s)	379
BtsCI	GGATG	1 cut(s)	550
BtsI	GCAGTG	1 cut(s)	762
BtsIMutI	CAGTG	3 cut(s)	199, 762, 960
BtuMI	TCGCGA	1 cut(s)	50
Cac8I	GCNNGC	4 cut(s)	26, 181, 199, 370
CfoI	GCGC	1 cut(s)	30
Cfr13I	GGNCC	2 cut(s)	144, 465
Csp6I	GTAC	1 cut(s)	564
CspCI	CAANNNNNGTGG	2 cut(s)	963, 998
CviAII	CATG	6 cut(s)	414, 484, 764, 775, 977, 1200
CviQI	GTAC	1 cut(s)	564
DpnI	GATC	3 cut(s)	106, 843, 915
DpnII	GATC	3 cut(s)	104, 841, 913
DrdI	GACNNNNNNGTC	1 cut(s)	472
DseDI	GACNNNNNNGTC	1 cut(s)	472
Eam1104I	CTCTTC	1 cut(s)	383
EarI	CTCTTC	1 cut(s)	383
Eco130I	CCWWGG	1 cut(s)	483
Eco47I	GGWCC	2 cut(s)	144, 465
Eco57I	CTGAAG	2 cut(s)	644, 845
EcoRII	CCWGG	2 cut(s)	460, 1046
EcoT14I	CCWWGG	1 cut(s)	483
EcoT22I	ATGCAT	2 cut(s)	419, 982
ErhI	CCWWGG	1 cut(s)	483
FaeI	CATG	6 cut(s)	417, 487, 767, 778, 980, 1203
FalI	AAGNNNNNCTT	2 cut(s)	927, 959
FaqI	GGGAC	2 cut(s)	478, 709
FatI	CATG	6 cut(s)	413, 483, 763, 774, 976, 1199
FauI	CCCGC	1 cut(s)	446
FblI	GTMKAC	2 cut(s)	347, 805
Fnu4HI	GCNGC	4 cut(s)	373, 1008, 1011, 1197
FokI	GGATG	1 cut(s)	557
Fsp4HI	GCNGC	4 cut(s)	373, 1008, 1011, 1197
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	4 cut(s)	373, 1008, 1011, 1197
GsuI	CTGGAG	2 cut(s)	1038, 1131
HaeIII	GGCC	1 cut(s)	434
HapII	CCGG	6 cut(s)	108, 184, 435, 468, 542, 751
HhaI	GCGC	1 cut(s)	30
Hin1II	CATG	6 cut(s)	417, 487, 767, 778, 980, 1203
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HinfI	GANTC	9 cut(s)	10, 74, 121, 149, 295, 919, 928, 1085, 1120
HpaII	CCGG	6 cut(s)	108, 184, 435, 468, 542, 751
HphI	GGTGA	3 cut(s)	125, 520, 1174
Hpy166II	GTNNAC	2 cut(s)	348, 806
Hpy188III	TCNNGA	5 cut(s)	49, 536, 798, 925, 1017
Hpy8I	GTNNAC	2 cut(s)	348, 806
Hpy99I	CGWCG	3 cut(s)	157, 160, 380
HpyAV	CCTTC	2 cut(s)	322, 424
HpyCH4III	ACNGT	4 cut(s)	352, 364, 563, 964
HpyCH4IV	ACGT	2 cut(s)	63, 378
HpyF10VI	GCNNNNNNNGC	1 cut(s)	414
HpySE526I	ACGT	2 cut(s)	63, 378
Hsp92II	CATG	6 cut(s)	417, 487, 767, 778, 980, 1203
HspAI	GCGC	1 cut(s)	28
Kzo9I	GATC	3 cut(s)	104, 841, 913
LmnI	GCTCC	4 cut(s)	84, 310, 382, 1150
Lsp1109I	GCAGC	2 cut(s)	994, 997
LweI	GCATC	2 cut(s)	1022, 1053
MaeII	ACGT	2 cut(s)	63, 378
MalI	GATC	3 cut(s)	106, 843, 915
MboI	GATC	3 cut(s)	104, 841, 913
MboII	GAAGA	3 cut(s)	33, 400, 650
MfeI	CAATTG	1 cut(s)	1056
MflI	RGATCY	1 cut(s)	104
MlyI	GAGTC	2 cut(s)	19, 115
MmeI	TCCRAC	3 cut(s)	13, 82, 708
Mph1103I	ATGCAT	2 cut(s)	419, 982
MroXI	GAANNNNTTC	3 cut(s)	40, 233, 1124
MseI	TTAA	3 cut(s)	737, 869, 1100
MspI	CCGG	6 cut(s)	108, 184, 435, 468, 542, 751
MspR9I	CCNGG	4 cut(s)	436, 462, 752, 1048
MunI	CAATTG	1 cut(s)	1056
MvaI	CCWGG	2 cut(s)	462, 1048
MvnI	CGCG	3 cut(s)	30, 50, 375
MwoI	GCNNNNNNNGC	1 cut(s)	414
NciI	CCSGG	2 cut(s)	436, 752
NcoI	CCATGG	1 cut(s)	483
NdeII	GATC	3 cut(s)	104, 841, 913
NlaIII	CATG	6 cut(s)	417, 487, 767, 778, 980, 1203
NlaIV	GGNNCC	5 cut(s)	106, 188, 354, 466, 540
NruI	TCGCGA	1 cut(s)	50
NsiI	ATGCAT	2 cut(s)	419, 982
NspI	RCATGY	1 cut(s)	980
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 158
PdmI	GAANNNNTTC	3 cut(s)	40, 233, 1124
PfeI	GAWTC	7 cut(s)	74, 149, 295, 919, 928, 1085, 1120
PfoI	TCCNGGA	1 cut(s)	1046
PkrI	GCNGC	4 cut(s)	374, 1009, 1012, 1198
PleI	GAGTC	2 cut(s)	18, 115
PpsI	GAGTC	2 cut(s)	18, 115
PsiI	TTATAA	1 cut(s)	890
Psp1406I	AACGTT	1 cut(s)	63
Psp6I	CCWGG	2 cut(s)	460, 1046
PspGI	CCWGG	2 cut(s)	460, 1046
PspN4I	GGNNCC	5 cut(s)	106, 188, 354, 466, 540
PspPI	GGNCC	2 cut(s)	144, 465
PsuI	RGATCY	1 cut(s)	104
RruI	TCGCGA	1 cut(s)	50
RsaI	GTAC	1 cut(s)	565
RsaNI	GTAC	1 cut(s)	564
SaqAI	TTAA	3 cut(s)	737, 869, 1100
SatI	GCNGC	4 cut(s)	373, 1008, 1011, 1197
Sau3AI	GATC	3 cut(s)	104, 841, 913
Sau96I	GGNCC	2 cut(s)	144, 465
SchI	GAGTC	2 cut(s)	19, 115
ScrFI	CCNGG	4 cut(s)	436, 462, 752, 1048
SfaNI	GCATC	2 cut(s)	1022, 1053
SfcI	CTRYAG	1 cut(s)	360
SinI	GGWCC	2 cut(s)	144, 465
SmlI	CTYRAG	3 cut(s)	252, 796, 923
SmoI	CTYRAG	3 cut(s)	252, 796, 923
SsiI	CCGC	4 cut(s)	111, 133, 373, 453
StyD4I	CCNGG	4 cut(s)	434, 460, 750, 1046
StyI	CCWWGG	1 cut(s)	483
TaaI	ACNGT	4 cut(s)	352, 364, 563, 964
TaiI	ACGT	2 cut(s)	66, 381
TaqI	TCGA	1 cut(s)	72
TatI	WGTACW	1 cut(s)	563
TauI	GCSGC	1 cut(s)	375
TfiI	GAWTC	7 cut(s)	74, 149, 295, 919, 928, 1085, 1120
Tru1I	TTAA	3 cut(s)	737, 869, 1100
Tru9I	TTAA	3 cut(s)	737, 869, 1100
TscAI	CASTG	3 cut(s)	199, 762, 967
TseI	GCWGC	3 cut(s)	1007, 1010, 1196
TspDTI	ATGAA	5 cut(s)	17, 32, 179, 763, 1095
TspRI	CASTG	3 cut(s)	199, 762, 967
VpaK11BI	GGWCC	2 cut(s)	144, 465
XapI	RAATTY	2 cut(s)	36, 1102
XceI	RCATGY	1 cut(s)	980
XmiI	GTMKAC	2 cut(s)	347, 805
XmnI	GAANNNNTTC	3 cut(s)	40, 233, 1124
Zsp2I	ATGCAT	2 cut(s)	419, 982

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.