Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002119

Physical Location & Seq

Genomic Coordinates Reverse (-)

70506311 .. 70511321

Gene Structure 5011 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020961

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2022 bp

ATGCCTTCCATCGCCGACCGCAGCGTTGAACTTGAATCCAACGCCGTCGGATCAGTGGCGGAACTGTGTAGTCGGCTACTTGGGCTGAGATTTGTCTCCCTCGACTTCGTCCCTGGCTGGCTGTCTCCCTCGACTTCGTACTTCAGACCTTCAGTGCTTCGCTCCTCAAGACCTCGACAAGCCTCCGTTCTGACGGATCCTCAGTCCTCAGTCTCTCTCTCTCTCAAGTCTCATCTGAAATTTCATGAACCCACTTCGTTCAACTCAGTACAGGAGCTCAACCGGCAGCCGCTCAAGAAGACAAGCAGATCGGACTATCGGAGACTTGGAGTCCGGACTCCGGAGGTCGACGCGGTGAGTCGGTGTCTTGGAATGGTGACTGCATCCTGGTTCCGCCTCTGCGTCGGATCTGCCGGAGTTTCTACTCCTCCGAAACGGAGGCTGAGATCCAATTCGTCGCCGATGAAGCTGAGTCCGATGAAATGCAAGCGCGTTGGAATTTCTTCCGTCGCGAAATTACGCAACGTTGAGGTCGAATCGGAGAGGAGCGTGGAGGAGGTAGTCGGATCCGGCGGTGATTTGACTCCTCAGAAGCGGAAGTTGAGGTCCGATTCGTCGTCGCCGATGAAGTGTAAATCGGCTCGCCGGAACCTCAGTGCTTGCACCAGCACTCCTGCAAATGGAATTGAGAAGTATTTCAGTCAGAAAAAGCCTCGAGCCTTTTGCAAACCACCGATTGTTGCTAAGCCGAATTGGAATCCCAGAGATAAGGAGCAGATGAGGATAGTGAAGGAGGCATTGCACTTGTCAACGGTCCCCTCTACTGTTGCGTGCCGCGATGTGGAGCAGAAGAGGGTTCTGGAGTTCTGCAAGTCATGCATAGAGCAAGAGAAGGCCGGGAGTTTATATGTATGCGGGTGTCCTGGGACCGGAAAGTCCTTGTCCATGGAGAAAGTGAAACAGCTTTTGGTGAATTGGGCAGGAGAGGGTGGATTTCAGGAACCGGATGTGTTGGAATTGAACTGTACATCGCTAACAAAAACTTCTGATATTTTCGCTAAGATACTTGGTAAATACCAACCTCAAAAGAAAGCTAATGGCACTACCTCCCTGCAACTTCTTCAGAAATTATATTCTCAAAAGCCTCAGTCAGATGGGACTAAGATGATGTTGATAATAGCTGATGAGTTGGATTACTTAATCACTAAAGACCGGGCAGTGCTCCATGACCTTTTCATGCTCACAACATACCCATTCTCAAGATGTATACTTTTAGGAGTAGCAAATGCAATCGACTTAGCTGATCGTTTTGTTCCAAAACTTCAGTCATTAAATTGTAAGCCTATGGTTATAACTTTTCGGGCATACTCTAAGGATCAGATTCTCAAGATTCTCCAAGAGAGGCTTATGGCACTACCTTACACTGTTTTTCAACCACATGCATTGGAACTTTGTGCCAGAAAAGTTGCTGCTGCATCTGGAGATATGAGGAAAGCTCTCTGTATTTCCAGGAGTGCAATTGAGATGCTGGAAGCAGAGTTGAGAGAATCTACTGACAAGTTAAATTCATCAACAGCAGAGAATCCATTCTCTGAGCAACAGACAGCTCCAGCTCTTGCTCTGGTGAAAAAACAGGAGATTGATATTGTGAGAATTGATCACATGGCCATTGCTTTGTCAAAGACATTCAAGTCACCAGTAGTGGATACCATACAATGTCTTCCTCAACATCAACAGATTATAATGTGCTCTGCTGCAAAGCATTTCCGTGGTGTGAAGAAAGATACAACTATAGGAGAGTTAAACAAATCTTACATAGACATCTGCAAAGCAACACTAATTCCCCCGGTTGGGAGTTTTGAATTTTCAAGTATGTGCAAAGTGCTAAATGACCAGGGCCTCCTCAAACTCAGTGGCCAATCCAGAGATATAAAATCCAGGAGAGTGACATTGAATGTAGATGAAGGGGACATCACATTTGCATTGCAGGGAATCCGGTTTTTTCGGACTTGTCTTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

674

Amino Acids

74.78

Weight (kDa)

9.49

Isoelectric Point (pI)

50.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_22	PF13401	298 - 415	1.9e-12	AAA domain
Cdc6-ORC-like_ATPase_lid	PF22606	456 - 513	2.7e-11	Cdc6/ORC-like, ATPase lid domain
WHD_Cdc6	PF09079	569 - 661	6.8e-20	CDC6, C terminal winged helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07270 AT1G07270 AT2G29680 AT2G29680
fragaria_vesca	FvH4_3g38340 FvH4_3g38340 FvH4_3g38340 FvH4_3g38340 FvH4_3g38340
malus_domestica	MD03G1072700.v1.1 MD11G1078800.v1.1
prunus_persica	Prupe.6G059500_v2.0.a1
pyrus_communis	pycom03g05890 pycom11g06590
rosa_chinensis	RchiOBHm_Chr2g0157131 RchiOBHm_Chr4g0399271 RchiOBHm_Chr5g0068951
rosa_laevigata	RLG00000020961 RLG00000036023
rosa_multiflora	Rmu_sc0001960.1_g000002 Rmu_sc0003822.1_g000023 Rmu_sc0010302.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011800 Rroxscaffold_1G00029470 Rroxscaffold_2G00092520
rosa_rugosa	Rorug01G0058900 Rorug01G0059000 Rorug01G0059100 Rorug01G0059200 Rorug05G0394800 Rorug07G0214100 Rorug07G0214200 Rorug07G0214300
rosa_samantha	Rh2BG537600 Rh2DG546400 Rh4AG092800 Rh4CG101200 Rh5BG470900 Rh5CG493400 Rh7BG347600
rosa_wichuraiana	Rw2G031040 Rw2G043260 Rw4G007640 Rw5G042190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1352, 1742
AasI	GACNNNNNNGTC	2 cut(s)	934, 1690
AccBSI	CCGCTC	1 cut(s)	292
AccI	GTMKAC	2 cut(s)	348, 1267
AccII	CGCG	4 cut(s)	353, 492, 512, 837
AccIII	TCCGGA	2 cut(s)	333, 340
AciI	CCGC	9 cut(s)	19, 59, 290, 353, 394, 573, 595, 835, 915
AclI	AACGTT	1 cut(s)	525
AclWI	GGATC	8 cut(s)	58, 191, 204, 415, 441, 561, 574, 1383
AcoI	YGGCCR	2 cut(s)	1665, 1915
AcsI	RAATTY	4 cut(s)	239, 498, 1564, 1862
AcuI	CTGAAG	4 cut(s)	127, 135, 1106, 1307
AfaI	GTAC	3 cut(s)	140, 270, 1027
AfiI	CCNNNNNNNGG	6 cut(s)	340, 680, 841, 929, 1850, 1851
AgsI	TTSAA	9 cut(s)	29, 35, 262, 1021, 1433, 1690, 1862, 1869, 1954
AhdI	GACNNNNNGTC	1 cut(s)	329
AjnI	CCWGG	6 cut(s)	112, 386, 922, 1508, 1893, 1937
AjuI	GAANNNNNNNTTGG	2 cut(s)	950, 982
AluBI	AGCT	9 cut(s)	277, 469, 964, 1094, 1181, 1301, 1496, 1607, 1613
AluI	AGCT	9 cut(s)	277, 469, 964, 1094, 1181, 1301, 1496, 1607, 1613
Alw21I	GWGCWC	3 cut(s)	279, 1224, 1751
Alw26I	GTCTC	5 cut(s)	100, 129, 217, 234, 316
AlwI	GGATC	8 cut(s)	58, 191, 204, 415, 441, 561, 574, 1383
Ama87I	CYCGRG	1 cut(s)	714
Aor13HI	TCCGGA	2 cut(s)	333, 340
AoxI	GGCC	4 cut(s)	894, 1665, 1897, 1915
ApeKI	GCWGC	5 cut(s)	21, 286, 1469, 1472, 1754
ApoI	RAATTY	4 cut(s)	239, 498, 1564, 1862
ArsI	GACNNNNNNTTYG	4 cut(s)	1310, 1342, 1961, 1993
Asp700I	GAANNNNTTC	3 cut(s)	502, 695, 1586
AspLEI	GCGC	1 cut(s)	492
AspS9I	GGNCC	4 cut(s)	606, 814, 927, 1897
AsuC2I	CCSGG	3 cut(s)	898, 1214, 1847
AsuHPI	GGTGA	6 cut(s)	367, 388, 587, 982, 1636, 1686
AvaI	CYCGRG	1 cut(s)	714
AvaII	GGWCC	3 cut(s)	606, 814, 927
BalI	TGGCCA	2 cut(s)	1667, 1917
BamHI	GGATCC	2 cut(s)	196, 566
BanII	GRGCYC	1 cut(s)	279
BbsI	GAAGAC	2 cut(s)	305, 1712
Bbv12I	GWGCWC	3 cut(s)	279, 1224, 1751
BbvI	GCAGC	5 cut(s)	33, 298, 1456, 1459, 1741
BccI	CCATC	2 cut(s)	17, 1148
BceAI	ACGGC	1 cut(s)	29
BcgI	CGANNNNNNTGC	2 cut(s)	705, 739
BciT130I	CCWGG	6 cut(s)	114, 388, 924, 1510, 1895, 1939
BciVI	GTATCC	1 cut(s)	1699
BclI	TGATCA	1 cut(s)	1657
BcnI	CCSGG	3 cut(s)	898, 1214, 1847
BcoDI	GTCTC	5 cut(s)	100, 129, 217, 234, 316
BfmI	CTRYAG	1 cut(s)	1791
BfuI	GTATCC	1 cut(s)	1699
BisI	GCNGC	7 cut(s)	22, 287, 290, 835, 1470, 1473, 1755
BlpI	GCTNAGC	1 cut(s)	744
BlsI	GCNGC	7 cut(s)	23, 288, 291, 836, 1471, 1474, 1756
Bme1390I	CCNGG	9 cut(s)	114, 388, 898, 924, 1214, 1510, 1847, 1895, 1939
Bme18I	GGWCC	3 cut(s)	606, 814, 927
BmeRI	GACNNNNNGTC	1 cut(s)	329
BmeT110I	CYCGRG	1 cut(s)	714
BmgT120I	GGNCC	4 cut(s)	606, 814, 927, 1897
BmiI	GGNNCC	7 cut(s)	198, 392, 568, 650, 816, 928, 1002
BmrFI	CCNGG	9 cut(s)	114, 388, 898, 924, 1214, 1510, 1847, 1895, 1939
BmsI	GCATC	3 cut(s)	392, 1484, 1515
BpiI	GAAGAC	2 cut(s)	305, 1712
BplI	GAGNNNNNCTC	2 cut(s)	1480, 1512
BpmI	CTGGAG	3 cut(s)	881, 1500, 1593
Bpu1102I	GCTNAGC	1 cut(s)	744
BpuEI	CTTGAG	5 cut(s)	151, 209, 278, 1243, 1370
BpuMI	CCSGG	3 cut(s)	898, 1214, 1847
BsaJI	CCNNGG	6 cut(s)	112, 923, 945, 1768, 1845, 1894
BsaWI	WCCGGW	5 cut(s)	333, 340, 929, 1003, 1995
BsaXI	ACNNNNNCTCC	2 cut(s)	655, 685
Bsc4I	CCNNNNNNNGG	6 cut(s)	340, 680, 841, 929, 1850, 1851
Bse118I	RCCGGY	1 cut(s)	282
Bse1I	ACTGG	1 cut(s)	1697
Bse3DI	GCAATG	3 cut(s)	797, 1668, 1982
BseAI	TCCGGA	2 cut(s)	333, 340
BseBI	CCWGG	6 cut(s)	114, 388, 924, 1510, 1895, 1939
BseDI	CCNNGG	6 cut(s)	112, 923, 945, 1768, 1845, 1894
BseGI	GGATG	2 cut(s)	383, 1012
BseLI	CCNNNNNNNGG	6 cut(s)	340, 680, 841, 929, 1850, 1851
BseMI	GCAATG	3 cut(s)	797, 1668, 1982
BseNI	ACTGG	1 cut(s)	1697
BseRI	GAGGAG	6 cut(s)	154, 417, 559, 569, 576, 1892
BseXI	GCAGC	5 cut(s)	33, 298, 1456, 1459, 1741
Bsh1236I	CGCG	4 cut(s)	353, 492, 512, 837
Bsh1285I	CGRYCG	1 cut(s)	19
BshFI	GGCC	4 cut(s)	896, 1667, 1899, 1917
BsiEI	CGRYCG	1 cut(s)	19
BsiHKAI	GWGCWC	3 cut(s)	279, 1224, 1751
BsiHKCI	CYCGRG	1 cut(s)	714
BslFI	GGGAC	5 cut(s)	95, 800, 940, 1171, 1982
BslI	CCNNNNNNNGG	6 cut(s)	340, 680, 841, 929, 1850, 1851
BsmAI	GTCTC	5 cut(s)	100, 129, 217, 234, 316
BsmFI	GGGAC	5 cut(s)	95, 800, 940, 1171, 1982
BsnI	GGCC	4 cut(s)	896, 1667, 1899, 1917
BsoBI	CYCGRG	1 cut(s)	714
Bsp1286I	GDGCHC	3 cut(s)	279, 1224, 1751
Bsp13I	TCCGGA	2 cut(s)	333, 340
Bsp1407I	TGTACA	1 cut(s)	1025
Bsp143I	GATC	9 cut(s)	50, 196, 308, 407, 446, 566, 1303, 1375, 1657
Bsp1720I	GCTNAGC	1 cut(s)	744
Bsp19I	CCATGG	1 cut(s)	945
Bsp68I	TCGCGA	1 cut(s)	512
BspACI	CCGC	9 cut(s)	19, 59, 290, 353, 394, 573, 595, 835, 915
BspANI	GGCC	4 cut(s)	896, 1667, 1899, 1917
BspEI	TCCGGA	2 cut(s)	333, 340
BspFNI	CGCG	4 cut(s)	353, 492, 512, 837
BspHI	TCATGA	1 cut(s)	244
BspLI	GGNNCC	7 cut(s)	198, 392, 568, 650, 816, 928, 1002
BspPI	GGATC	8 cut(s)	58, 191, 204, 415, 441, 561, 574, 1383
BsrBI	CCGCTC	1 cut(s)	292
BsrDI	GCAATG	3 cut(s)	797, 1668, 1982
BsrFI	RCCGGY	1 cut(s)	282
BsrGI	TGTACA	1 cut(s)	1025
BsrI	ACTGG	1 cut(s)	1697
BssAI	RCCGGY	1 cut(s)	282
BssECI	CCNNGG	6 cut(s)	112, 923, 945, 1768, 1845, 1894
BssMI	GATC	9 cut(s)	50, 196, 308, 407, 446, 566, 1303, 1375, 1657
BssNAI	GTATAC	1 cut(s)	1268
BssT1I	CCWWGG	1 cut(s)	945
Bst1107I	GTATAC	1 cut(s)	1268
Bst2UI	CCWGG	6 cut(s)	114, 388, 924, 1510, 1895, 1939
Bst4CI	ACNGT	5 cut(s)	66, 814, 826, 1025, 1426
Bst6I	CTCTTC	1 cut(s)	845
BstAPI	GCANNNNNTGC	1 cut(s)	876
BstAUI	TGTACA	1 cut(s)	1025
BstC8I	GCNNGC	5 cut(s)	119, 488, 643, 661, 832
BstDSI	CCRYGG	2 cut(s)	945, 1768
BstF5I	GGATG	2 cut(s)	383, 1012
BstFNI	CGCG	4 cut(s)	353, 492, 512, 837
BstHHI	GCGC	1 cut(s)	492
BstKTI	GATC	9 cut(s)	53, 199, 311, 410, 449, 569, 1306, 1378, 1660
BstMAI	GTCTC	5 cut(s)	100, 129, 217, 234, 316
BstMBI	GATC	9 cut(s)	50, 196, 308, 407, 446, 566, 1303, 1375, 1657
BstMCI	CGRYCG	1 cut(s)	19
BstMWI	GCNNNNNNNGC	4 cut(s)	82, 283, 466, 876
BstNI	CCWGG	6 cut(s)	114, 388, 924, 1510, 1895, 1939
BstNSI	RCATGY	1 cut(s)	1442
BstSCI	CCNGG	9 cut(s)	112, 386, 896, 922, 1212, 1508, 1845, 1893, 1937
BstSFI	CTRYAG	1 cut(s)	1791
BstUI	CGCG	4 cut(s)	353, 492, 512, 837
BstV1I	GCAGC	5 cut(s)	33, 298, 1456, 1459, 1741
BstV2I	GAAGAC	2 cut(s)	305, 1712
BstX2I	RGATCY	4 cut(s)	196, 407, 446, 566
BstYI	RGATCY	4 cut(s)	196, 407, 446, 566
BstZ17I	GTATAC	1 cut(s)	1268
BsuI	GTATCC	1 cut(s)	1699
BsuRI	GGCC	4 cut(s)	896, 1667, 1899, 1917
BtgI	CCRYGG	2 cut(s)	945, 1768
BtgZI	GCGATG	2 cut(s)	852, 1014
BtsCI	GGATG	2 cut(s)	383, 1012
BtsI	GCAGTG	1 cut(s)	1224
BtsIMutI	CAGTG	6 cut(s)	60, 159, 661, 1224, 1422, 1918
BtuMI	TCGCGA	1 cut(s)	512
Cac8I	GCNNGC	5 cut(s)	119, 488, 643, 661, 832
CciI	TCATGA	1 cut(s)	244
CfoI	GCGC	1 cut(s)	492
Cfr10I	RCCGGY	1 cut(s)	282
Cfr13I	GGNCC	4 cut(s)	606, 814, 927, 1897
CseI	GACGC	2 cut(s)	359, 391
Csp6I	GTAC	3 cut(s)	139, 269, 1026
CspCI	CAANNNNNGTGG	4 cut(s)	1425, 1460, 1894, 1929
CviAII	CATG	7 cut(s)	245, 876, 946, 1226, 1237, 1439, 1663
CviQI	GTAC	3 cut(s)	139, 269, 1026
DpnI	GATC	9 cut(s)	52, 198, 310, 409, 448, 568, 1305, 1377, 1659
DpnII	GATC	9 cut(s)	50, 196, 308, 407, 446, 566, 1303, 1375, 1657
DrdI	GACNNNNNNGTC	2 cut(s)	934, 1690
DriI	GACNNNNNGTC	1 cut(s)	329
DseDI	GACNNNNNNGTC	2 cut(s)	934, 1690
EaeI	YGGCCR	2 cut(s)	1665, 1915
Eam1104I	CTCTTC	1 cut(s)	845
Eam1105I	GACNNNNNGTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	845
EciI	GGCGGA	2 cut(s)	74, 383
Ecl136II	GAGCTC	1 cut(s)	277
Eco130I	CCWWGG	1 cut(s)	945
Eco24I	GRGCYC	1 cut(s)	279
Eco47I	GGWCC	3 cut(s)	606, 814, 927
Eco53kI	GAGCTC	1 cut(s)	277
Eco57I	CTGAAG	4 cut(s)	127, 135, 1106, 1307
Eco88I	CYCGRG	1 cut(s)	714
EcoICRI	GAGCTC	1 cut(s)	277
EcoO109I	RGGNCCY	1 cut(s)	1897
EcoRII	CCWGG	6 cut(s)	112, 386, 922, 1508, 1893, 1937
EcoT14I	CCWWGG	1 cut(s)	945
EcoT22I	ATGCAT	2 cut(s)	881, 1444
EcoT38I	GRGCYC	1 cut(s)	279
ErhI	CCWWGG	1 cut(s)	945
FaeI	CATG	7 cut(s)	248, 879, 949, 1229, 1240, 1442, 1666
FalI	AAGNNNNNCTT	2 cut(s)	1389, 1421
FaqI	GGGAC	5 cut(s)	95, 800, 940, 1171, 1982
FatI	CATG	7 cut(s)	244, 875, 945, 1225, 1236, 1438, 1662
FauI	CCCGC	1 cut(s)	908
FbaI	TGATCA	1 cut(s)	1657
FblI	GTMKAC	2 cut(s)	348, 1267
Fnu4HI	GCNGC	7 cut(s)	22, 287, 290, 835, 1470, 1473, 1755
FokI	GGATG	2 cut(s)	370, 1019
FriOI	GRGCYC	1 cut(s)	279
Fsp4HI	GCNGC	7 cut(s)	22, 287, 290, 835, 1470, 1473, 1755
GlaI	GCGC	1 cut(s)	491
GluI	GCNGC	7 cut(s)	22, 287, 290, 835, 1470, 1473, 1755
GsuI	CTGGAG	3 cut(s)	881, 1500, 1593
HaeIII	GGCC	4 cut(s)	896, 1667, 1899, 1917
HgaI	GACGC	2 cut(s)	359, 391
HhaI	GCGC	1 cut(s)	492
Hin1II	CATG	7 cut(s)	248, 879, 949, 1229, 1240, 1442, 1666
Hin6I	GCGC	1 cut(s)	490
HinP1I	GCGC	1 cut(s)	490
HincII	GTYRAC	2 cut(s)	349, 810
HindII	GTYRAC	2 cut(s)	349, 810
HphI	GGTGA	6 cut(s)	367, 388, 587, 982, 1636, 1686
Hpy166II	GTNNAC	3 cut(s)	349, 810, 1268
Hpy8I	GTNNAC	3 cut(s)	349, 810, 1268
Hpy99I	CGWCG	7 cut(s)	50, 353, 407, 460, 512, 619, 622
HpyAV	CCTTC	5 cut(s)	15, 159, 784, 886, 1958
HpyCH4III	ACNGT	5 cut(s)	66, 814, 826, 1025, 1426
HpyCH4IV	ACGT	1 cut(s)	525
HpyF10VI	GCNNNNNNNGC	4 cut(s)	82, 283, 466, 876
HpySE526I	ACGT	1 cut(s)	525
Hsp92II	CATG	7 cut(s)	248, 879, 949, 1229, 1240, 1442, 1666
HspAI	GCGC	1 cut(s)	490
Kpn2I	TCCGGA	2 cut(s)	333, 340
Ksp22I	TGATCA	1 cut(s)	1657
Kzo9I	GATC	9 cut(s)	50, 196, 308, 407, 446, 566, 1303, 1375, 1657
LmnI	GCTCC	7 cut(s)	167, 274, 546, 772, 844, 1227, 1612
Lsp1109I	GCAGC	5 cut(s)	33, 298, 1456, 1459, 1741
LweI	GCATC	3 cut(s)	392, 1484, 1515
MaeII	ACGT	1 cut(s)	525
MaeIII	GTNAC	3 cut(s)	376, 1692, 1945
MalI	GATC	9 cut(s)	52, 198, 310, 409, 448, 568, 1305, 1377, 1659
MbiI	CCGCTC	1 cut(s)	292
MboI	GATC	9 cut(s)	50, 196, 308, 407, 446, 566, 1303, 1375, 1657
MboII	GAAGA	6 cut(s)	310, 495, 862, 1112, 1712, 1789
MfeI	CAATTG	1 cut(s)	1518
MflI	RGATCY	4 cut(s)	196, 407, 446, 566
MhlI	GDGCHC	3 cut(s)	279, 1224, 1751
MlsI	TGGCCA	2 cut(s)	1667, 1917
MluNI	TGGCCA	2 cut(s)	1667, 1917
MlyI	GAGTC	5 cut(s)	331, 339, 367, 481, 577
MmeI	TCCRAC	7 cut(s)	28, 63, 385, 475, 544, 993, 1170
Mox20I	TGGCCA	2 cut(s)	1667, 1917
Mph1103I	ATGCAT	2 cut(s)	881, 1444
MroI	TCCGGA	2 cut(s)	333, 340
MroXI	GAANNNNTTC	3 cut(s)	502, 695, 1586
MscI	TGGCCA	2 cut(s)	1667, 1917
MseI	TTAA	4 cut(s)	1199, 1331, 1562, 1802
MslI	CAYNNNNRTG	1 cut(s)	1767
Msp20I	TGGCCA	2 cut(s)	1667, 1917
MspR9I	CCNGG	9 cut(s)	114, 388, 898, 924, 1214, 1510, 1847, 1895, 1939
MunI	CAATTG	1 cut(s)	1518
MvaI	CCWGG	6 cut(s)	114, 388, 924, 1510, 1895, 1939
MvnI	CGCG	4 cut(s)	353, 492, 512, 837
MwoI	GCNNNNNNNGC	4 cut(s)	82, 283, 466, 876
NciI	CCSGG	3 cut(s)	898, 1214, 1847
NcoI	CCATGG	1 cut(s)	945
NdeII	GATC	9 cut(s)	50, 196, 308, 407, 446, 566, 1303, 1375, 1657
NlaIII	CATG	7 cut(s)	248, 879, 949, 1229, 1240, 1442, 1666
NlaIV	GGNNCC	7 cut(s)	198, 392, 568, 650, 816, 928, 1002
NmuCI	GTSAC	3 cut(s)	376, 1692, 1945
NruI	TCGCGA	1 cut(s)	512
NsiI	ATGCAT	2 cut(s)	881, 1444
NspI	RCATGY	1 cut(s)	1442
PaeR7I	CTCGAG	1 cut(s)	714
PagI	TCATGA	1 cut(s)	244
PcsI	WCGNNNNNNNCGW	2 cut(s)	531, 620
PdmI	GAANNNNTTC	3 cut(s)	502, 695, 1586
PfeI	GAWTC	9 cut(s)	35, 536, 611, 757, 1381, 1390, 1547, 1582, 1992
PflFI	GACNNNGTC	1 cut(s)	107
PfoI	TCCNGGA	2 cut(s)	1508, 1937
PkrI	GCNGC	7 cut(s)	23, 288, 291, 836, 1471, 1474, 1756
PleI	GAGTC	5 cut(s)	331, 338, 366, 480, 577
PpsI	GAGTC	5 cut(s)	331, 338, 366, 480, 577
PsiI	TTATAA	2 cut(s)	1352, 1742
Psp124BI	GAGCTC	1 cut(s)	279
Psp1406I	AACGTT	1 cut(s)	525
Psp6I	CCWGG	6 cut(s)	112, 386, 922, 1508, 1893, 1937
PspGI	CCWGG	6 cut(s)	112, 386, 922, 1508, 1893, 1937
PspN4I	GGNNCC	7 cut(s)	198, 392, 568, 650, 816, 928, 1002
PspPI	GGNCC	4 cut(s)	606, 814, 927, 1897
PspXI	VCTCGAGB	1 cut(s)	714
PsuI	RGATCY	4 cut(s)	196, 407, 446, 566
PsyI	GACNNNGTC	1 cut(s)	107
RruI	TCGCGA	1 cut(s)	512
RsaI	GTAC	3 cut(s)	140, 270, 1027
RsaNI	GTAC	3 cut(s)	139, 269, 1026
RseI	CAYNNNNRTG	1 cut(s)	1767
SacI	GAGCTC	1 cut(s)	279
SalI	GTCGAC	1 cut(s)	347
SaqAI	TTAA	4 cut(s)	1199, 1331, 1562, 1802
SatI	GCNGC	7 cut(s)	22, 287, 290, 835, 1470, 1473, 1755
Sau3AI	GATC	9 cut(s)	50, 196, 308, 407, 446, 566, 1303, 1375, 1657
Sau96I	GGNCC	4 cut(s)	606, 814, 927, 1897
SchI	GAGTC	5 cut(s)	331, 339, 367, 481, 577
ScrFI	CCNGG	9 cut(s)	114, 388, 898, 924, 1214, 1510, 1847, 1895, 1939
SduI	GDGCHC	3 cut(s)	279, 1224, 1751
SfaNI	GCATC	3 cut(s)	392, 1484, 1515
SfcI	CTRYAG	1 cut(s)	1791
Sfr274I	CTCGAG	1 cut(s)	714
SinI	GGWCC	3 cut(s)	606, 814, 927
SlaI	CTCGAG	1 cut(s)	714
SmiMI	CAYNNNNRTG	1 cut(s)	1767
SmlI	CTYRAG	7 cut(s)	166, 224, 293, 714, 1258, 1385, 2015
SmoI	CTYRAG	7 cut(s)	166, 224, 293, 714, 1258, 1385, 2015
SsiI	CCGC	9 cut(s)	19, 59, 290, 353, 394, 573, 595, 835, 915
SstI	GAGCTC	1 cut(s)	279
StyD4I	CCNGG	9 cut(s)	112, 386, 896, 922, 1212, 1508, 1845, 1893, 1937
StyI	CCWWGG	1 cut(s)	945
TaaI	ACNGT	5 cut(s)	66, 814, 826, 1025, 1426
TaiI	ACGT	1 cut(s)	528
TaqI	TCGA	7 cut(s)	102, 131, 175, 348, 534, 715, 1293
TatI	WGTACW	2 cut(s)	268, 1025
TauI	GCSGC	2 cut(s)	292, 837
TfiI	GAWTC	9 cut(s)	35, 536, 611, 757, 1381, 1390, 1547, 1582, 1992
Tru1I	TTAA	4 cut(s)	1199, 1331, 1562, 1802
Tru9I	TTAA	4 cut(s)	1199, 1331, 1562, 1802
TscAI	CASTG	6 cut(s)	60, 159, 661, 1224, 1429, 1918
TseFI	GTSAC	3 cut(s)	376, 1692, 1945
TseI	GCWGC	5 cut(s)	21, 286, 1469, 1472, 1754
Tsp45I	GTSAC	3 cut(s)	376, 1692, 1945
TspDTI	ATGAA	8 cut(s)	233, 261, 479, 494, 641, 1225, 1557, 1977
TspGWI	ACGGA	5 cut(s)	175, 209, 451, 496, 1757
TspRI	CASTG	6 cut(s)	60, 159, 661, 1224, 1429, 1918
Tth111I	GACNNNGTC	1 cut(s)	107
VpaK11BI	GGWCC	3 cut(s)	606, 814, 927
XapI	RAATTY	4 cut(s)	239, 498, 1564, 1862
XceI	RCATGY	1 cut(s)	1442
XhoI	CTCGAG	1 cut(s)	714
XmiI	GTMKAC	2 cut(s)	348, 1267
XmnI	GAANNNNTTC	3 cut(s)	502, 695, 1586
Zsp2I	ATGCAT	2 cut(s)	881, 1444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.