AT2G29680

cell division control

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
12689171 .. 12693121
3951 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G29680.1

Sequence Viewer

Length: 1620 bp
ATGCCTGCAATCGCCGGACCTAGTTCTTCCCCTCAGAAACATGTCGTCGGTTCTAGATCGGAGAGTATCGGAGGTGTTAGATCCGCCGAAGTCAACACTTCTCGGAAACGGAAGTTGATATCCGATTCGGCTGCGGAGGTTTCAGCGACGGTGGTGTTGCCTGTGAATTCGATATCTACACCGATGAAATGGAAATCGCCTCGTCGATGTGCTGTTTCAATCCCTAAGACCTCTGATGAGGAGATTAAGGAAGATTCTAATGAAAAATTGGAAAATCCAGTGATATCTGTTTGTTTAGAGGTTAAATCAAAGTGGAACCCTAAAGATGATGAACAAATGAAAGCTGTGAAGGAGGCATTACATGTATCTAAGGCACCGTCAACTGTTGTTTGTCGTGAGGATGAGCAAAGACGGGTTTTCGAGTTTGTTAAAGGTTGTATGGAGCAGAAGAAGGCTGGTAGTTTGTATATATGTGGGTGTCCTGGAACTGGAAAGTCACTATCCATGGAGAAAGTAAGACTACAAGCTGAAGAATGGGCAAAGCAGGCAGGTTTGCATTGTCCTGAAACAGTGTCTGTTAATTGCACATCACTGACAAAAAGTACAGATATTTTCTCCAAGATACTTGGTAACTATGAGTCCGGGAAGAAAGCTAATGGTTCATTTTCACCTCTACAACAACTTCAGAGATTGTTTTCTCAAAAGCAACAACAATCCAGATCAAAGATGATGCTAATAATTGCAGATGAAATGGATTACTTGATCACAAGAGACCGAGGTGTCCTTCATGAGCTTTTTATGCTCACAACTTTGCCATTGTCAAGGTGTATACTTATAGGTACTGTCTTTTGCGTTATTAATGTTCATTTTTTAAAATCTGTTTCCTATGGTCAAACAAGTTTTAAGTTTAAAGTTCGTATTTGTCCTCCAGGTGTAGCAAATGCAATAGACCTTGCAGATCGTTTCCTTCCAAAATTGAAGTCTCTTAATTGCAAACCTTTGGTTGTCACTTTCCGTGCCTATTCTAAAGATCAGATCCTTAGGATTCTGCAGGAGAGGCTTGTGGCACTTCCATTTGTTGCATTTCAGTCCAATGCCTTGGAAATATGTGCAAGAAAAGTATCAGCTGCATCAGGAGACATGAGAAAGGCTCTATGTGTCTGCAGGAGCGCTCTAGAAATCTTAGAAATAGAAGTTAGAGGATCAATAGATCAAGAACCAAAAGGTCCAGTTCCAGAGTGTCAAGTGGTCAAGATGGATCATATGATAGCTGCATTGTCCAAGACGTTTAAATCTCCAATAGTTGACACCATCCAGTCTCTACCTCAACACCAACAAATCATAGTCTGTTCTGCTGCAAAGGCTTTTCGAGGGAGCAAAAAGGATAGAACCATTGCAGAGTTAAATAAGCTATACTTGGAAATCTGTAAATCTTCGATGATAACTCCAGCTGGAATTACTGAGTTCAGTAATATGTGTACAGTGCTAAATGATCAGGGGATTCTAAAACTTAGTCTTGCTCGAGACGATAAACTAAAGAGAGTGAGCCTTAGAGTAGATGAAGCAGACATCACATTTGCTCTTAAGGAGATTCGATTCTTCCGCAACTGTCTTCTATGA

Protein Analysis

539

Amino Acids

59.84

Weight (kDa)

9.25

Isoelectric Point (pI)

46.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_22 PF13401 151 - 280 8.9e-17 AAA domain
Cdc6-ORC-like_ATPase_lid PF22606 341 - 398 5.4e-09 Cdc6/ORC-like, ATPase lid domain
WHD_Cdc6 PF09079 436 - 527 1.7e-20 CDC6, C terminal winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 779
Acc36I ACCTGC 1 cut(s) 539
AccB1I GGYRCC 1 cut(s) 373
AccI GTMKAC 1 cut(s) 829
AciI CCGC 3 cut(s) 84, 134, 1603
AclWI GGATC 4 cut(s) 75, 1030, 1210, 1266
AcsI RAATTY 1 cut(s) 166
AcuI CTGAAG 2 cut(s) 549, 668
AfaI GTAC 3 cut(s) 604, 841, 1480
AfeI AGCGCT 1 cut(s) 1171
AfiI CCNNNNNNNGG 1 cut(s) 488
AflII CTTAAG 1 cut(s) 1583
AflIII ACRYGT 2 cut(s) 40, 361
AgsI TTSAA 2 cut(s) 219, 979
AjnI CCWGG 2 cut(s) 481, 928
AluBI AGCT 8 cut(s) 344, 527, 653, 793, 1127, 1271, 1411, 1451
AluI AGCT 8 cut(s) 344, 527, 653, 793, 1127, 1271, 1411, 1451
Alw26I GTCTC 5 cut(s) 765, 987, 1131, 1323, 1518
AlwI GGATC 4 cut(s) 75, 1030, 1210, 1266
AlwNI CAGNNNCTG 1 cut(s) 575
Ama87I CYCGRG 1 cut(s) 1521
Aor51HI AGCGCT 1 cut(s) 1171
ApeKI GCWGC 4 cut(s) 131, 1127, 1271, 1355
ApoI RAATTY 1 cut(s) 166
ArsI GACNNNNNNTTYG 4 cut(s) 965, 997, 1559, 1591
AseI ATTAAT 1 cut(s) 858
AspLEI GCGC 1 cut(s) 1172
AspS9I GGNCC 2 cut(s) 17, 1226
AsuC2I CCSGG 1 cut(s) 643
AsuHPI GGTGA 1 cut(s) 660
AvaI CYCGRG 1 cut(s) 1521
AvaII GGWCC 2 cut(s) 17, 1226
AxyI CCTNAGG 1 cut(s) 1040
BanI GGYRCC 1 cut(s) 373
BbsI GAAGAC 1 cut(s) 1604
BbvI GCAGC 4 cut(s) 118, 1114, 1258, 1342
BccI CCATC 2 cut(s) 1249, 1319
BcgI CGANNNNNNTGC 2 cut(s) 113, 147
BciT130I CCWGG 2 cut(s) 483, 930
BclI TGATCA 2 cut(s) 762, 1492
BcnI CCSGG 1 cut(s) 643
BcoDI GTCTC 5 cut(s) 765, 987, 1131, 1323, 1518
BfaI CTAG 3 cut(s) 21, 54, 1175
BfmI CTRYAG 2 cut(s) 1049, 1162
BfoI RGCGCY 1 cut(s) 1173
BfrI CTTAAG 1 cut(s) 1583
BfuAI ACCTGC 1 cut(s) 539
BisI GCNGC 4 cut(s) 132, 1128, 1272, 1356
BlsI GCNGC 4 cut(s) 133, 1129, 1273, 1357
Bme1390I CCNGG 3 cut(s) 483, 643, 930
Bme18I GGWCC 2 cut(s) 17, 1226
BmeT110I CYCGRG 1 cut(s) 1521
BmgT120I GGNCC 2 cut(s) 17, 1226
BmiI GGNNCC 2 cut(s) 317, 375
BmrFI CCNGG 3 cut(s) 483, 643, 930
BmsI GCATC 2 cut(s) 720, 1139
BpiI GAAGAC 1 cut(s) 1604
BplI GAGNNNNNCTC 2 cut(s) 1135, 1167
BpmI CTGGAG 2 cut(s) 912, 1431
BpuMI CCSGG 1 cut(s) 643
BsaI GGTCTC 1 cut(s) 765
BsaJI CCNNGG 3 cut(s) 504, 775, 1098
Bsc4I CCNNNNNNNGG 1 cut(s) 488
Bse1I ACTGG 4 cut(s) 278, 493, 1229, 1315
Bse21I CCTNAGG 1 cut(s) 1040
Bse3DI GCAATG 1 cut(s) 1392
BseBI CCWGG 2 cut(s) 483, 930
BseDI CCNNGG 3 cut(s) 504, 775, 1098
BseGI GGATG 2 cut(s) 406, 1311
BseLI CCNNNNNNNGG 1 cut(s) 488
BseMI GCAATG 1 cut(s) 1392
BseMII CTCAG 2 cut(s) 47, 1452
BseNI ACTGG 4 cut(s) 278, 493, 1229, 1315
BseRI GAGGAG 1 cut(s) 254
BseXI GCAGC 4 cut(s) 118, 1114, 1258, 1342
BshNI GGYRCC 1 cut(s) 373
BsiHKCI CYCGRG 1 cut(s) 1521
BsiSI CCGG 2 cut(s) 15, 642
BslI CCNNNNNNNGG 1 cut(s) 488
BsmAI GTCTC 5 cut(s) 765, 987, 1131, 1323, 1518
BsmBI CGTCTC 1 cut(s) 1518
Bso31I GGTCTC 1 cut(s) 765
BsoBI CYCGRG 1 cut(s) 1521
Bsp1407I TGTACA 1 cut(s) 1478
Bsp19I CCATGG 1 cut(s) 504
BspACI CCGC 3 cut(s) 84, 134, 1603
BspCNI CTCAG 2 cut(s) 46, 1453
BspHI TCATGA 1 cut(s) 787
BspLI GGNNCC 2 cut(s) 317, 375
BspMAI CTGCAG 2 cut(s) 1053, 1166
BspMI ACCTGC 1 cut(s) 539
BspPI GGATC 4 cut(s) 75, 1030, 1210, 1266
BspT107I GGYRCC 1 cut(s) 373
BspTI CTTAAG 1 cut(s) 1583
BspTNI GGTCTC 1 cut(s) 765
BsrDI GCAATG 1 cut(s) 1392
BsrGI TGTACA 1 cut(s) 1478
BsrI ACTGG 4 cut(s) 278, 493, 1229, 1315
BssECI CCNNGG 3 cut(s) 504, 775, 1098
BssNAI GTATAC 1 cut(s) 830
BssT1I CCWWGG 2 cut(s) 504, 1098
Bst1107I GTATAC 1 cut(s) 830
Bst2UI CCWGG 2 cut(s) 483, 930
Bst4CI ACNGT 7 cut(s) 151, 378, 385, 571, 844, 1483, 1610
BstAFI CTTAAG 1 cut(s) 1583
BstAUI TGTACA 1 cut(s) 1478
BstC8I GCNNGC 2 cut(s) 6, 546
BstDEI CTNAG 8 cut(s) 33, 225, 369, 1040, 1183, 1461, 1511, 1550
BstDSI CCRYGG 1 cut(s) 504
BstF5I GGATG 2 cut(s) 406, 1311
BstH2I RGCGCY 1 cut(s) 1173
BstHHI GCGC 1 cut(s) 1172
BstMAI GTCTC 5 cut(s) 765, 987, 1131, 1323, 1518
BstMWI GCNNNNNNNGC 4 cut(s) 545, 799, 1057, 1361
BstNI CCWGG 2 cut(s) 483, 930
BstNSI RCATGY 2 cut(s) 44, 365
BstSCI CCNGG 3 cut(s) 481, 641, 928
BstSFI CTRYAG 2 cut(s) 1049, 1162
BstV1I GCAGC 4 cut(s) 118, 1114, 1258, 1342
BstV2I GAAGAC 1 cut(s) 1604
BstX2I RGATCY 2 cut(s) 80, 1035
BstXI CCANNNNNNTGG 1 cut(s) 1099
BstYI RGATCY 2 cut(s) 80, 1035
BstZ17I GTATAC 1 cut(s) 830
Bsu36I CCTNAGG 1 cut(s) 1040
BtgI CCRYGG 1 cut(s) 504
BtsCI GGATG 2 cut(s) 406, 1311
BtsIMutI CAGTG 4 cut(s) 285, 576, 590, 1488
BveI ACCTGC 1 cut(s) 539
Cac8I GCNNGC 2 cut(s) 6, 546
CaiI CAGNNNCTG 1 cut(s) 575
CciI TCATGA 1 cut(s) 787
CfoI GCGC 1 cut(s) 1172
Cfr13I GGNCC 2 cut(s) 17, 1226
Csp6I GTAC 3 cut(s) 603, 840, 1479
CviAII CATG 5 cut(s) 41, 362, 505, 788, 1141
CviQI GTAC 3 cut(s) 603, 840, 1479
DdeI CTNAG 8 cut(s) 33, 225, 369, 1040, 1183, 1461, 1511, 1550
DraI TTTAAA 3 cut(s) 873, 910, 1291
DrdI GACNNNNNNGTC 1 cut(s) 779
DseDI GACNNNNNNGTC 1 cut(s) 779
EciI GGCGGA 1 cut(s) 73
Eco130I CCWWGG 2 cut(s) 504, 1098
Eco31I GGTCTC 1 cut(s) 765
Eco32I GATATC 3 cut(s) 120, 174, 285
Eco47I GGWCC 2 cut(s) 17, 1226
Eco47III AGCGCT 1 cut(s) 1171
Eco57I CTGAAG 2 cut(s) 549, 668
Eco81I CCTNAGG 1 cut(s) 1040
Eco88I CYCGRG 1 cut(s) 1521
EcoRI GAATTC 1 cut(s) 166
EcoRII CCWGG 2 cut(s) 481, 928
EcoRV GATATC 3 cut(s) 120, 174, 285
EcoT14I CCWWGG 2 cut(s) 504, 1098
ErhI CCWWGG 2 cut(s) 504, 1098
Esp3I CGTCTC 1 cut(s) 1518
FaeI CATG 5 cut(s) 44, 365, 508, 791, 1144
FalI AAGNNNNNCTT 2 cut(s) 1400, 1432
FatI CATG 5 cut(s) 40, 361, 504, 787, 1140
FauNDI CATATG 1 cut(s) 1263
FbaI TGATCA 2 cut(s) 762, 1492
FblI GTMKAC 1 cut(s) 829
Fnu4HI GCNGC 4 cut(s) 132, 1128, 1272, 1356
FokI GGATG 2 cut(s) 413, 1298
Fsp4HI GCNGC 4 cut(s) 132, 1128, 1272, 1356
FspBI CTAG 3 cut(s) 21, 54, 1175
GlaI GCGC 1 cut(s) 1171
GluI GCNGC 4 cut(s) 132, 1128, 1272, 1356
GsuI CTGGAG 2 cut(s) 912, 1431
HaeII RGCGCY 1 cut(s) 1173
HapII CCGG 2 cut(s) 15, 642
HhaI GCGC 1 cut(s) 1172
Hin1II CATG 5 cut(s) 44, 365, 508, 791, 1144
Hin6I GCGC 1 cut(s) 1170
HinP1I GCGC 1 cut(s) 1170
HincII GTYRAC 3 cut(s) 94, 381, 1306
HindII GTYRAC 3 cut(s) 94, 381, 1306
HinfI GANTC 7 cut(s) 125, 254, 638, 1045, 1501, 1591, 1596
HpaII CCGG 2 cut(s) 15, 642
HphI GGTGA 1 cut(s) 660
Hpy166II GTNNAC 5 cut(s) 94, 381, 830, 1306, 1479
Hpy188I TCNGA 8 cut(s) 36, 61, 71, 105, 124, 235, 687, 1035
Hpy8I GTNNAC 5 cut(s) 94, 381, 830, 1306, 1479
Hpy99I CGWCG 3 cut(s) 50, 151, 207
HpyAV CCTTC 4 cut(s) 343, 445, 794, 977
HpyCH4III ACNGT 7 cut(s) 151, 378, 385, 571, 844, 1483, 1610
HpyCH4IV ACGT 1 cut(s) 1286
HpyF10VI GCNNNNNNNGC 4 cut(s) 545, 799, 1057, 1361
HpyF3I CTNAG 8 cut(s) 33, 225, 369, 1040, 1183, 1461, 1511, 1550
HpySE526I ACGT 1 cut(s) 1286
Hsp92II CATG 5 cut(s) 44, 365, 508, 791, 1144
HspAI GCGC 1 cut(s) 1170
Ksp22I TGATCA 2 cut(s) 762, 1492
LmnI GCTCC 3 cut(s) 442, 1167, 1374
Lsp1109I GCAGC 4 cut(s) 118, 1114, 1258, 1342
LweI GCATC 2 cut(s) 720, 1139
MaeI CTAG 3 cut(s) 21, 54, 1175
MaeII ACGT 1 cut(s) 1286
MaeIII GTNAC 3 cut(s) 495, 629, 1006
MboII GAAGA 8 cut(s) 18, 263, 460, 542, 658, 1425, 1591, 1604
MflI RGATCY 2 cut(s) 80, 1035
MluCI AATT 7 cut(s) 166, 266, 580, 738, 974, 988, 1455
MlyI GAGTC 1 cut(s) 647
MspA1I CMGCKG 2 cut(s) 1127, 1451
MspCI CTTAAG 1 cut(s) 1583
MspI CCGG 2 cut(s) 15, 642
MspR9I CCNGG 3 cut(s) 483, 643, 930
MvaI CCWGG 2 cut(s) 483, 930
MwoI GCNNNNNNNGC 4 cut(s) 545, 799, 1057, 1361
NciI CCSGG 1 cut(s) 643
NcoI CCATGG 1 cut(s) 504
NdeI CATATG 1 cut(s) 1263
NlaIII CATG 5 cut(s) 44, 365, 508, 791, 1144
NlaIV GGNNCC 2 cut(s) 317, 375
NmuCI GTSAC 2 cut(s) 495, 1006
NspI RCATGY 2 cut(s) 44, 365
PaeR7I CTCGAG 1 cut(s) 1521
PagI TCATGA 1 cut(s) 787
PciI ACATGT 2 cut(s) 40, 361
PfeI GAWTC 6 cut(s) 125, 254, 1045, 1501, 1591, 1596
PfoI TCCNGGA 2 cut(s) 481, 641
PkrI GCNGC 4 cut(s) 133, 1129, 1273, 1357
PleI GAGTC 1 cut(s) 646
PpsI GAGTC 1 cut(s) 646
PscI ACATGT 2 cut(s) 40, 361
PshBI ATTAAT 1 cut(s) 858
Psp6I CCWGG 2 cut(s) 481, 928
PspGI CCWGG 2 cut(s) 481, 928
PspN4I GGNNCC 2 cut(s) 317, 375
PspPI GGNCC 2 cut(s) 17, 1226
PstI CTGCAG 2 cut(s) 1053, 1166
PstNI CAGNNNCTG 1 cut(s) 575
PsuI RGATCY 2 cut(s) 80, 1035
PvuII CAGCTG 2 cut(s) 1127, 1451
RsaI GTAC 3 cut(s) 604, 841, 1480
RsaNI GTAC 3 cut(s) 603, 840, 1479
SatI GCNGC 4 cut(s) 132, 1128, 1272, 1356
Sau96I GGNCC 2 cut(s) 17, 1226
SchI GAGTC 1 cut(s) 647
ScrFI CCNGG 3 cut(s) 483, 643, 930
SfaNI GCATC 2 cut(s) 720, 1139
SfcI CTRYAG 2 cut(s) 1049, 1162
Sfr274I CTCGAG 1 cut(s) 1521
SinI GGWCC 2 cut(s) 17, 1226
SlaI CTCGAG 1 cut(s) 1521
SmlI CTYRAG 2 cut(s) 1521, 1583
SmoI CTYRAG 2 cut(s) 1521, 1583
Sse9I AATT 7 cut(s) 166, 266, 580, 738, 974, 988, 1455
SsiI CCGC 3 cut(s) 84, 134, 1603
SspMI CTAG 3 cut(s) 21, 54, 1175
StyD4I CCNGG 3 cut(s) 481, 641, 928
StyI CCWWGG 2 cut(s) 504, 1098
TaaI ACNGT 7 cut(s) 151, 378, 385, 571, 844, 1483, 1610
TaiI ACGT 1 cut(s) 1289
TaqI TCGA 7 cut(s) 170, 205, 420, 1369, 1436, 1522, 1594
TaqII GACCGA 1 cut(s) 789
TasI AATT 7 cut(s) 166, 266, 580, 738, 974, 988, 1455
TatI WGTACW 2 cut(s) 602, 1478
TfiI GAWTC 6 cut(s) 125, 254, 1045, 1501, 1591, 1596
TscAI CASTG 4 cut(s) 285, 576, 597, 1488
TseFI GTSAC 2 cut(s) 495, 1006
TseI GCWGC 4 cut(s) 131, 1127, 1271, 1355
Tsp45I GTSAC 2 cut(s) 495, 1006
TspDTI ATGAA 9 cut(s) 200, 276, 345, 353, 651, 762, 776, 854, 1575
TspGWI ACGGA 2 cut(s) 124, 1004
TspRI CASTG 4 cut(s) 285, 576, 597, 1488
Vha464I CTTAAG 1 cut(s) 1583
VpaK11BI GGWCC 2 cut(s) 17, 1226
VspI ATTAAT 1 cut(s) 858
XapI RAATTY 1 cut(s) 166
XbaI TCTAGA 2 cut(s) 53, 1174
XceI RCATGY 2 cut(s) 44, 365
XhoI CTCGAG 1 cut(s) 1521
XmiI GTMKAC 1 cut(s) 829
XspI CTAG 3 cut(s) 21, 54, 1175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.