Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002119

Physical Location & Seq

Genomic Coordinates Reverse (-)

5080033 .. 5082977

Gene Structure 2945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g06590.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGAACCTGAAAGTGAGGTGAAGGAGGCATTGCACGTTTCAACCGTGCCGTCAACTGTTTCGTGCCGGGAAGACGAGCAGAAGAGGGTTTTGGAGTTCTTGAAACAATGCATAGAGCAAGAGAAGGCTGGAAGTTTGTATGTGTGTGGGTGTCCCGGGACCGGAAAATCGCTGTCCATTGAGAAAGTGAAGCAGGCTTTGGTTGATTGGGCAGGAGAGGCTGGGTTTGAGGAACCGGATGTGTTGGCTTTGAATTGTTCTTCTCTAACAAAGACTTCTGATATTTTCGCTAAGATACTTGGTAAAGACCAAACGCCAAAGGAAGTTAAAAGCAAAACCTCATCCCTGCAGCTTCTCCAAAATTTGTACTCTCAAAAGCCTTTGTATTCTAGAAGGAAGATGACGCTGGTAATAGCTGATGAGTTGGACTTCTTAATTACTAAAGACCGGGTGGTGCTTCATGATCTTTTTATGCTCACAACGTACCAATTCTCGAGATGCATACTCATAGGCAAACCTATGGTTATTACTTTTCGGGCATACTCTTATGACCAGATTCTCAGGATTCTTCAACAGAGGTTAATTACACTACCTTACACCGTCTTTCAACCACCAGCATTAGAACTTTGTGCAAGAAAAGTTGCTGCCGCATCTGGAGATATGAGGAAAGCTCTTTGTATTTGCAGGAGTGCCATTGAGATTCTGGAAGCAGAGGTGAAAGAATCTGCTGAGAACTTGAATTCATCATCAGTAGTGGATGCATTCTTTGAGCAGCAGACGGCAACTGCTCCAGCTCCTGTTGTGAAAAAACAGGAGACTGATGTTGTGACAATTGGTCATATGGCTTCTGCTTTGTCAAAGACATTCAAATCACCAGTAGTGGATACCATACAAAGTCTTCCGCAACATCAACAGATTATACTTTGCTCCGCCGTGAGGCTTTTCCATGGGAAAAATAAGGATTCAACTGTAGCACAGCTAAATAAATCTTATATAGACATCTGCAAATCAACATTAATTCCACCGGTCGGAATTTTTGAATTTTCAAGTATGTGCAGAGTGCTAAATGACCAGAAACAAGTTACTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

364

Amino Acids

40.43

Weight (kDa)

7.9

Isoelectric Point (pI)

47.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07270 AT1G07270 AT2G29680 AT2G29680
fragaria_vesca	FvH4_3g38340 FvH4_3g38340 FvH4_3g38340 FvH4_3g38340 FvH4_3g38340
malus_domestica	MD03G1072700.v1.1 MD11G1078800.v1.1
prunus_persica	Prupe.6G059500_v2.0.a1
pyrus_communis	pycom03g05890 pycom11g06590
rosa_chinensis	RchiOBHm_Chr2g0157131 RchiOBHm_Chr4g0399271 RchiOBHm_Chr5g0068951
rosa_laevigata	RLG00000020961 RLG00000036023
rosa_multiflora	Rmu_sc0001960.1_g000002 Rmu_sc0003822.1_g000023 Rmu_sc0010302.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011800 Rroxscaffold_1G00029470 Rroxscaffold_2G00092520
rosa_rugosa	Rorug01G0058900 Rorug01G0059000 Rorug01G0059100 Rorug01G0059200 Rorug05G0394800 Rorug07G0214100 Rorug07G0214200 Rorug07G0214300
rosa_samantha	Rh2BG537600 Rh2DG546400 Rh4AG092800 Rh4CG101200 Rh5BG470900 Rh5CG493400 Rh7BG347600
rosa_wichuraiana	Rw2G031040 Rw2G043260 Rw4G007640 Rw5G042190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	648, 902, 930
AcsI	RAATTY	4 cut(s)	361, 739, 1032, 1040
AfaI	GTAC	2 cut(s)	368, 485
AfiI	CCNNNNNNNGG	3 cut(s)	161, 936, 1028
AgeI	ACCGGT	1 cut(s)	1024
AhdI	GACNNNNNGTC	1 cut(s)	834
AjuI	GAANNNNNNNTTGG	4 cut(s)	74, 106, 182, 214
AluBI	AGCT	5 cut(s)	352, 416, 671, 794, 979
AluI	AGCT	5 cut(s)	352, 416, 671, 794, 979
Alw26I	GTCTC	1 cut(s)	809
AlwNI	CAGNNNCTG	1 cut(s)	797
Ama87I	CYCGRG	2 cut(s)	155, 493
ApeKI	GCWGC	3 cut(s)	349, 644, 772
ApoI	RAATTY	4 cut(s)	361, 739, 1032, 1040
AseI	ATTAAT	1 cut(s)	1016
AsiGI	ACCGGT	1 cut(s)	1024
AspS9I	GGNCC	1 cut(s)	159
AsuC2I	CCSGG	4 cut(s)	68, 156, 157, 449
AsuHPI	GGTGA	3 cut(s)	31, 727, 864
AvaI	CYCGRG	2 cut(s)	155, 493
AvaII	GGWCC	1 cut(s)	159
BbsI	GAAGAC	2 cut(s)	78, 890
BbvI	GCAGC	3 cut(s)	361, 631, 784
BceAI	ACGGC	3 cut(s)	34, 795, 917
BciVI	GTATCC	1 cut(s)	877
BcnI	CCSGG	4 cut(s)	68, 156, 157, 449
BcoDI	GTCTC	1 cut(s)	809
BfaI	CTAG	1 cut(s)	390
BfmI	CTRYAG	2 cut(s)	347, 969
BfuI	GTATCC	1 cut(s)	877
BisI	GCNGC	4 cut(s)	350, 645, 648, 773
BlsI	GCNGC	4 cut(s)	351, 646, 649, 774
Bme1390I	CCNGG	4 cut(s)	68, 156, 157, 449
Bme18I	GGWCC	1 cut(s)	159
BmeRI	GACNNNNNGTC	1 cut(s)	834
BmeT110I	CYCGRG	2 cut(s)	155, 493
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	3 cut(s)	6, 160, 234
BmrFI	CCNGG	4 cut(s)	68, 156, 157, 449
BmsI	GCATC	3 cut(s)	488, 659, 748
BpiI	GAAGAC	2 cut(s)	78, 890
BplI	GAGNNNNNCTC	2 cut(s)	655, 687
BpmI	CTGGAG	2 cut(s)	675, 774
BpuMI	CCSGG	4 cut(s)	68, 156, 157, 449
BsaJI	CCNNGG	2 cut(s)	155, 946
BsaWI	WCCGGW	3 cut(s)	161, 235, 1024
Bsc4I	CCNNNNNNNGG	3 cut(s)	161, 936, 1028
Bse118I	RCCGGY	1 cut(s)	1024
Bse1I	ACTGG	1 cut(s)	875
Bse3DI	GCAATG	1 cut(s)	29
BseDI	CCNNGG	2 cut(s)	155, 946
BseGI	GGATG	3 cut(s)	244, 341, 763
BseLI	CCNNNNNNNGG	3 cut(s)	161, 936, 1028
BseMI	GCAATG	1 cut(s)	29
BseMII	CTCAG	2 cut(s)	574, 720
BseNI	ACTGG	1 cut(s)	875
BseXI	GCAGC	3 cut(s)	361, 631, 784
BseYI	CCCAGC	1 cut(s)	221
BsgI	GTGCAG	1 cut(s)	1075
Bsh1285I	CGRYCG	1 cut(s)	1029
BshTI	ACCGGT	1 cut(s)	1024
BsiEI	CGRYCG	1 cut(s)	1029
BsiHKCI	CYCGRG	2 cut(s)	155, 493
BsiSI	CCGG	6 cut(s)	67, 156, 162, 236, 448, 1025
BslFI	GGGAC	2 cut(s)	138, 172
BslI	CCNNNNNNNGG	3 cut(s)	161, 936, 1028
BsmAI	GTCTC	1 cut(s)	809
BsmFI	GGGAC	2 cut(s)	138, 172
BsmI	GAATGC	1 cut(s)	761
BsoBI	CYCGRG	2 cut(s)	155, 493
Bsp143I	GATC	1 cut(s)	463
Bsp19I	CCATGG	1 cut(s)	946
BspACI	CCGC	3 cut(s)	648, 902, 930
BspCNI	CTCAG	2 cut(s)	573, 721
BspHI	TCATGA	1 cut(s)	460
BspLI	GGNNCC	3 cut(s)	6, 160, 234
BspMAI	CTGCAG	1 cut(s)	351
BsrDI	GCAATG	1 cut(s)	29
BsrFI	RCCGGY	1 cut(s)	1024
BsrI	ACTGG	1 cut(s)	875
BssAI	RCCGGY	1 cut(s)	1024
BssECI	CCNNGG	2 cut(s)	155, 946
BssMI	GATC	1 cut(s)	463
BssT1I	CCWWGG	1 cut(s)	946
Bst4CI	ACNGT	4 cut(s)	46, 58, 601, 970
Bst6I	CTCTTC	1 cut(s)	77
BstC8I	GCNNGC	1 cut(s)	195
BstDEI	CTNAG	3 cut(s)	291, 560, 729
BstDSI	CCRYGG	1 cut(s)	946
BstF5I	GGATG	3 cut(s)	244, 341, 763
BstKTI	GATC	1 cut(s)	466
BstMAI	GTCTC	1 cut(s)	809
BstMBI	GATC	1 cut(s)	463
BstMCI	CGRYCG	1 cut(s)	1029
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstSCI	CCNGG	4 cut(s)	66, 154, 155, 447
BstSFI	CTRYAG	2 cut(s)	347, 969
BstV1I	GCAGC	3 cut(s)	361, 631, 784
BstV2I	GAAGAC	2 cut(s)	78, 890
BsuI	GTATCC	1 cut(s)	877
BtgI	CCRYGG	1 cut(s)	946
BtsCI	GGATG	3 cut(s)	244, 341, 763
Cac8I	GCNNGC	1 cut(s)	195
CaiI	CAGNNNCTG	1 cut(s)	797
CciI	TCATGA	1 cut(s)	460
Cfr10I	RCCGGY	1 cut(s)	1024
Cfr13I	GGNCC	1 cut(s)	159
Cfr9I	CCCGGG	1 cut(s)	155
CseI	GACGC	1 cut(s)	412
Csp6I	GTAC	2 cut(s)	367, 484
CspAI	ACCGGT	1 cut(s)	1024
CviAII	CATG	2 cut(s)	461, 947
CviQI	GTAC	2 cut(s)	367, 484
DdeI	CTNAG	3 cut(s)	291, 560, 729
DpnI	GATC	1 cut(s)	465
DpnII	GATC	1 cut(s)	463
DriI	GACNNNNNGTC	1 cut(s)	834
Eam1104I	CTCTTC	1 cut(s)	77
Eam1105I	GACNNNNNGTC	1 cut(s)	834
EarI	CTCTTC	1 cut(s)	77
EciI	GGCGGA	1 cut(s)	919
Eco130I	CCWWGG	1 cut(s)	946
Eco47I	GGWCC	1 cut(s)	159
Eco88I	CYCGRG	2 cut(s)	155, 493
EcoRI	GAATTC	1 cut(s)	739
EcoT14I	CCWWGG	1 cut(s)	946
EcoT22I	ATGCAT	3 cut(s)	113, 503, 763
ErhI	CCWWGG	1 cut(s)	946
FaeI	CATG	2 cut(s)	464, 950
FaqI	GGGAC	2 cut(s)	138, 172
FatI	CATG	2 cut(s)	460, 946
FauNDI	CATATG	1 cut(s)	840
Fnu4HI	GCNGC	4 cut(s)	350, 645, 648, 773
FokI	GGATG	3 cut(s)	251, 328, 770
Fsp4HI	GCNGC	4 cut(s)	350, 645, 648, 773
FspBI	CTAG	1 cut(s)	390
GluI	GCNGC	4 cut(s)	350, 645, 648, 773
GsaI	CCCAGC	1 cut(s)	225
GsuI	CTGGAG	2 cut(s)	675, 774
HapII	CCGG	6 cut(s)	67, 156, 162, 236, 448, 1025
HgaI	GACGC	1 cut(s)	412
Hin1II	CATG	2 cut(s)	464, 950
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HinfI	GANTC	5 cut(s)	556, 565, 700, 722, 962
HpaII	CCGG	6 cut(s)	67, 156, 162, 236, 448, 1025
HphI	GGTGA	3 cut(s)	31, 727, 864
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188I	TCNGA	3 cut(s)	280, 1031, 1091
Hpy188III	TCNNGA	8 cut(s)	100, 390, 461, 493, 495, 562, 654, 704
Hpy8I	GTNNAC	1 cut(s)	54
HpyAV	CCTTC	3 cut(s)	16, 118, 387
HpyCH4III	ACNGT	4 cut(s)	46, 58, 601, 970
HpyCH4IV	ACGT	2 cut(s)	36, 482
HpyCH4V	TGCA	9 cut(s)	34, 111, 349, 501, 632, 684, 761, 1005, 1056
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpyF3I	CTNAG	3 cut(s)	291, 560, 729
HpySE526I	ACGT	2 cut(s)	36, 482
Hsp92II	CATG	2 cut(s)	464, 950
Kzo9I	GATC	1 cut(s)	463
LmnI	GCTCC	3 cut(s)	793, 799, 932
Lsp1109I	GCAGC	3 cut(s)	361, 631, 784
LweI	GCATC	3 cut(s)	488, 659, 748
MaeI	CTAG	1 cut(s)	390
MaeII	ACGT	2 cut(s)	36, 482
MaeIII	GTNAC	2 cut(s)	826, 1081
MalI	GATC	1 cut(s)	465
MboI	GATC	1 cut(s)	463
MboII	GAAGA	6 cut(s)	83, 94, 252, 409, 560, 890
MfeI	CAATTG	1 cut(s)	831
MmeI	TCCRAC	2 cut(s)	405, 1009
Mph1103I	ATGCAT	3 cut(s)	113, 503, 763
MseI	TTAA	4 cut(s)	327, 434, 581, 1016
MspI	CCGG	6 cut(s)	67, 156, 162, 236, 448, 1025
MspR9I	CCNGG	4 cut(s)	68, 156, 157, 449
MunI	CAATTG	1 cut(s)	831
Mva1269I	GAATGC	1 cut(s)	761
MwoI	GCNNNNNNNGC	1 cut(s)	218
NciI	CCSGG	4 cut(s)	68, 156, 157, 449
NcoI	CCATGG	1 cut(s)	946
NdeI	CATATG	1 cut(s)	840
NdeII	GATC	1 cut(s)	463
NlaIII	CATG	2 cut(s)	464, 950
NlaIV	GGNNCC	3 cut(s)	6, 160, 234
NmuCI	GTSAC	1 cut(s)	826
NsiI	ATGCAT	3 cut(s)	113, 503, 763
PaeR7I	CTCGAG	1 cut(s)	493
PagI	TCATGA	1 cut(s)	460
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PctI	GAATGC	1 cut(s)	761
PfeI	GAWTC	5 cut(s)	556, 565, 700, 722, 962
PinAI	ACCGGT	1 cut(s)	1024
PkrI	GCNGC	4 cut(s)	351, 646, 649, 774
PshBI	ATTAAT	1 cut(s)	1016
PspFI	CCCAGC	1 cut(s)	221
PspN4I	GGNNCC	3 cut(s)	6, 160, 234
PspPI	GGNCC	1 cut(s)	159
PstI	CTGCAG	1 cut(s)	351
PstNI	CAGNNNCTG	1 cut(s)	797
RsaI	GTAC	2 cut(s)	368, 485
RsaNI	GTAC	2 cut(s)	367, 484
SaqAI	TTAA	4 cut(s)	327, 434, 581, 1016
SatI	GCNGC	4 cut(s)	350, 645, 648, 773
Sau3AI	GATC	1 cut(s)	463
Sau96I	GGNCC	1 cut(s)	159
ScrFI	CCNGG	4 cut(s)	68, 156, 157, 449
SfaNI	GCATC	3 cut(s)	488, 659, 748
SfcI	CTRYAG	2 cut(s)	347, 969
Sfr274I	CTCGAG	1 cut(s)	493
SinI	GGWCC	1 cut(s)	159
SlaI	CTCGAG	1 cut(s)	493
SmaI	CCCGGG	1 cut(s)	157
SmlI	CTYRAG	1 cut(s)	493
SmoI	CTYRAG	1 cut(s)	493
SsiI	CCGC	3 cut(s)	648, 902, 930
SspMI	CTAG	1 cut(s)	390
StyD4I	CCNGG	4 cut(s)	66, 154, 155, 447
StyI	CCWWGG	1 cut(s)	946
TaaI	ACNGT	4 cut(s)	46, 58, 601, 970
TaiI	ACGT	2 cut(s)	39, 485
TaqI	TCGA	1 cut(s)	494
TatI	WGTACW	1 cut(s)	366
TauI	GCSGC	1 cut(s)	650
TfiI	GAWTC	5 cut(s)	556, 565, 700, 722, 962
Tru1I	TTAA	4 cut(s)	327, 434, 581, 1016
Tru9I	TTAA	4 cut(s)	327, 434, 581, 1016
TseFI	GTSAC	1 cut(s)	826
TseI	GCWGC	3 cut(s)	349, 644, 772
Tsp45I	GTSAC	1 cut(s)	826
TspDTI	ATGAA	2 cut(s)	449, 732
TspMI	CCCGGG	1 cut(s)	155
VpaK11BI	GGWCC	1 cut(s)	159
VspI	ATTAAT	1 cut(s)	1016
XapI	RAATTY	4 cut(s)	361, 739, 1032, 1040
XbaI	TCTAGA	1 cut(s)	389
XcmI	CCANNNNNNNNNTGG	1 cut(s)	700
XhoI	CTCGAG	1 cut(s)	493
XmaI	CCCGGG	1 cut(s)	155
XspI	CTAG	1 cut(s)	390
Zsp2I	ATGCAT	3 cut(s)	113, 503, 763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.