Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002119

Physical Location & Seq

Genomic Coordinates Reverse (-)

77513724 .. 77516906

Gene Structure 3183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG546400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGCCTTCCATCGCCGACCGCAGCGTCGAACTCCAATCCAACGCCGTCGGATCCGCCGGAGTTTCTACTCCTCCGAAACGGAGGCTGAGATCCAATTCGTCGCCGATGAAGCTGAGTCCGGTGAAATGCAAGCGCGTCGGAATTTCTTCCGTCGCGAAATTACGCAGCGTTGTGGTCGAATCGGAGAGGAGCGTGGAGGAGGTAGTCGGATCCGGCGGTGATTTGACTCCTCAGAAGCGGAAGTTGAGGTCCGATTCGTCGTCGCCGATGAAGTGTAAATCGGCTCGCCGGAACCTCAGTGCTTGCACCAGCACTCCTGCAAATGTGAGATTTGGATTGGATAATAAGGAGCAGATGAGGATAGTGAAGGAGGCATTGCACTTGTCAACGGTCCCCTCTACTGTTGCGTGCCGCCATGTGGAGCAGAAGAGGGTTCTGGAGTTCTGCAAGTCATGCATAGAGCAAGAGAAGGCCGGGAGTTTATATGTATGCGGGTGTCCTGGGACCGGAAAGTCCTTGTCCATGGAGAAAGTGAAACAGCTTTTGGTGAATTGGGCAGGAGAGGGTGGATATCAGGAACCGGATGTGTTGGAATTGAACTGTACATCGCTAACAAAAACTTCTGATATTTTCGCTAAGATACTTGGTAAATACCAACCTCAAAAGAAAGCTAATGGCACTACCTCCCTGCAACTTCTTCAGAAATTATATTCTCAAAAGCCTCAGTCAGATGGGACTAAGATGATGTTGATAATAGCTGATGAGTTGGATTACTTAATCACTAAAGACCGGGCAGTGCTCCATGACCTTTTCATGCTCACAACATACCCATTCTCAAGATGTATACTTTTAGGAGTAGCAAATGCAATCGACTTAGCTGATCGTTTTGTTCCAAAACTTCAGTCATTAAATTGTAAGCCTATGGTTATAACTTTTCGGGCATACTCTAAGGATCAGATTCTCAAGATTCTCCAAGAGAGGCTTATGGCACTACCTTACACTGTTTTTCAACCACATGCATTGGAACTTTGTGCCAGAAAAGTTGCTGCTGCATCTGGAGATATGAGGAAAGCTCTCTGTATTTCCAGGAGTGCAATTGAGATGCTGGAAGCAGAGTTGAGAGAATCTACTGACAAGTTAAATTCATCAACAGCAGAGAATCCATTCTCTGAGCAACAGACAGCTCCAGCTCTTGCTCTGGTGAAAAAACAGGAGATTGATATTGTAAGTAGTTACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

413

Amino Acids

45.53

Weight (kDa)

9.29

Isoelectric Point (pI)

60.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_22	PF13401	157 - 274	8.1e-13	AAA domain
Cdc6-ORC-like_ATPase_lid	PF22606	315 - 372	1.4e-11	Cdc6/ORC-like, ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07270 AT1G07270 AT2G29680 AT2G29680
fragaria_vesca	FvH4_3g38340 FvH4_3g38340 FvH4_3g38340 FvH4_3g38340 FvH4_3g38340
malus_domestica	MD03G1072700.v1.1 MD11G1078800.v1.1
prunus_persica	Prupe.6G059500_v2.0.a1
pyrus_communis	pycom03g05890 pycom11g06590
rosa_chinensis	RchiOBHm_Chr2g0157131 RchiOBHm_Chr4g0399271 RchiOBHm_Chr5g0068951
rosa_laevigata	RLG00000020961 RLG00000036023
rosa_multiflora	Rmu_sc0001960.1_g000002 Rmu_sc0003822.1_g000023 Rmu_sc0010302.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011800 Rroxscaffold_1G00029470 Rroxscaffold_2G00092520
rosa_rugosa	Rorug01G0058900 Rorug01G0059000 Rorug01G0059100 Rorug01G0059200 Rorug05G0394800 Rorug07G0214100 Rorug07G0214200 Rorug07G0214300
rosa_samantha	Rh2BG537600 Rh2DG546400 Rh4AG092800 Rh4CG101200 Rh5BG470900 Rh5CG493400 Rh7BG347600
rosa_wichuraiana	Rw2G031040 Rw2G043260 Rw4G007640 Rw5G042190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	929
AasI	GACNNNNNNGTC	2 cut(s)	23, 511
AccI	GTMKAC	1 cut(s)	844
AccII	CGCG	2 cut(s)	135, 155
AciI	CCGC	6 cut(s)	19, 54, 216, 238, 412, 492
AclWI	GGATC	6 cut(s)	45, 58, 84, 204, 217, 960
AcsI	RAATTY	2 cut(s)	141, 1141
AcuI	CTGAAG	2 cut(s)	683, 884
AfaI	GTAC	1 cut(s)	604
AfiI	CCNNNNNNNGG	2 cut(s)	418, 506
AgsI	TTSAA	2 cut(s)	598, 1010
AjnI	CCWGG	2 cut(s)	499, 1085
AjuI	GAANNNNNNNTTGG	2 cut(s)	527, 559
AluBI	AGCT	8 cut(s)	112, 541, 671, 758, 878, 1073, 1184, 1190
AluI	AGCT	8 cut(s)	112, 541, 671, 758, 878, 1073, 1184, 1190
Alw21I	GWGCWC	1 cut(s)	801
AlwI	GGATC	6 cut(s)	45, 58, 84, 204, 217, 960
AoxI	GGCC	1 cut(s)	471
ApeKI	GCWGC	4 cut(s)	21, 165, 1046, 1049
ApoI	RAATTY	2 cut(s)	141, 1141
ArsI	GACNNNNNNTTYG	2 cut(s)	887, 919
Asp700I	GAANNNNTTC	2 cut(s)	145, 1163
AspLEI	GCGC	1 cut(s)	135
AspS9I	GGNCC	3 cut(s)	249, 391, 504
AsuC2I	CCSGG	2 cut(s)	475, 791
AsuHPI	GGTGA	4 cut(s)	133, 230, 559, 1213
AvaII	GGWCC	3 cut(s)	249, 391, 504
BamHI	GGATCC	2 cut(s)	50, 209
Bbv12I	GWGCWC	1 cut(s)	801
BbvI	GCAGC	4 cut(s)	33, 177, 1033, 1036
BccI	CCATC	2 cut(s)	17, 725
BceAI	ACGGC	1 cut(s)	29
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BciT130I	CCWGG	2 cut(s)	501, 1087
BcnI	CCSGG	2 cut(s)	475, 791
BisI	GCNGC	5 cut(s)	22, 166, 412, 1047, 1050
BlsI	GCNGC	5 cut(s)	23, 167, 413, 1048, 1051
Bme1390I	CCNGG	4 cut(s)	475, 501, 791, 1087
Bme18I	GGWCC	3 cut(s)	249, 391, 504
BmgT120I	GGNCC	3 cut(s)	249, 391, 504
BmiI	GGNNCC	6 cut(s)	52, 211, 293, 393, 505, 579
BmrFI	CCNGG	4 cut(s)	475, 501, 791, 1087
BmsI	GCATC	2 cut(s)	1061, 1092
BplI	GAGNNNNNCTC	2 cut(s)	1057, 1089
BpmI	CTGGAG	3 cut(s)	458, 1077, 1170
BpuEI	CTTGAG	2 cut(s)	820, 947
BpuMI	CCSGG	2 cut(s)	475, 791
BsaJI	CCNNGG	2 cut(s)	500, 522
BsaWI	WCCGGW	3 cut(s)	118, 506, 580
BsaXI	ACNNNNNCTCC	2 cut(s)	298, 328
Bsc4I	CCNNNNNNNGG	2 cut(s)	418, 506
Bse3DI	GCAATG	1 cut(s)	374
BseBI	CCWGG	2 cut(s)	501, 1087
BseDI	CCNNGG	2 cut(s)	500, 522
BseGI	GGATG	1 cut(s)	589
BseLI	CCNNNNNNNGG	2 cut(s)	418, 506
BseMI	GCAATG	1 cut(s)	374
BseMII	CTCAG	6 cut(s)	77, 104, 245, 310, 737, 1161
BseRI	GAGGAG	4 cut(s)	60, 202, 212, 219
BseXI	GCAGC	4 cut(s)	33, 177, 1033, 1036
Bsh1236I	CGCG	2 cut(s)	135, 155
Bsh1285I	CGRYCG	1 cut(s)	19
BshFI	GGCC	1 cut(s)	473
BsiEI	CGRYCG	1 cut(s)	19
BsiHKAI	GWGCWC	1 cut(s)	801
BsiSI	CCGG	8 cut(s)	57, 119, 213, 289, 474, 507, 581, 790
BslFI	GGGAC	3 cut(s)	377, 517, 748
BslI	CCNNNNNNNGG	2 cut(s)	418, 506
BsmFI	GGGAC	3 cut(s)	377, 517, 748
BsnI	GGCC	1 cut(s)	473
Bsp1286I	GDGCHC	1 cut(s)	801
Bsp1407I	TGTACA	1 cut(s)	602
Bsp143I	GATC	5 cut(s)	50, 89, 209, 880, 952
Bsp19I	CCATGG	1 cut(s)	522
Bsp68I	TCGCGA	1 cut(s)	155
BspACI	CCGC	6 cut(s)	19, 54, 216, 238, 412, 492
BspANI	GGCC	1 cut(s)	473
BspCNI	CTCAG	6 cut(s)	78, 105, 244, 309, 736, 1162
BspFNI	CGCG	2 cut(s)	135, 155
BspLI	GGNNCC	6 cut(s)	52, 211, 293, 393, 505, 579
BspPI	GGATC	6 cut(s)	45, 58, 84, 204, 217, 960
BsrDI	GCAATG	1 cut(s)	374
BsrGI	TGTACA	1 cut(s)	602
BssECI	CCNNGG	2 cut(s)	500, 522
BssMI	GATC	5 cut(s)	50, 89, 209, 880, 952
BssNAI	GTATAC	1 cut(s)	845
BssT1I	CCWWGG	1 cut(s)	522
Bst1107I	GTATAC	1 cut(s)	845
Bst2UI	CCWGG	2 cut(s)	501, 1087
Bst4CI	ACNGT	4 cut(s)	391, 403, 602, 1003
Bst6I	CTCTTC	1 cut(s)	422
BstAPI	GCANNNNNTGC	1 cut(s)	453
BstAUI	TGTACA	1 cut(s)	602
BstC8I	GCNNGC	4 cut(s)	131, 286, 304, 409
BstDSI	CCRYGG	1 cut(s)	522
BstF5I	GGATG	1 cut(s)	589
BstFNI	CGCG	2 cut(s)	135, 155
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	5 cut(s)	53, 92, 212, 883, 955
BstMBI	GATC	5 cut(s)	50, 89, 209, 880, 952
BstMCI	CGRYCG	1 cut(s)	19
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 453
BstNI	CCWGG	2 cut(s)	501, 1087
BstNSI	RCATGY	1 cut(s)	1019
BstSCI	CCNGG	4 cut(s)	473, 499, 789, 1085
BstUI	CGCG	2 cut(s)	135, 155
BstV1I	GCAGC	4 cut(s)	33, 177, 1033, 1036
BstX2I	RGATCY	3 cut(s)	50, 89, 209
BstYI	RGATCY	3 cut(s)	50, 89, 209
BstZ17I	GTATAC	1 cut(s)	845
BsuRI	GGCC	1 cut(s)	473
BtgI	CCRYGG	1 cut(s)	522
BtgZI	GCGATG	1 cut(s)	591
BtsCI	GGATG	1 cut(s)	589
BtsI	GCAGTG	1 cut(s)	801
BtsIMutI	CAGTG	3 cut(s)	304, 801, 999
BtuMI	TCGCGA	1 cut(s)	155
Cac8I	GCNNGC	4 cut(s)	131, 286, 304, 409
CfoI	GCGC	1 cut(s)	135
Cfr13I	GGNCC	3 cut(s)	249, 391, 504
CseI	GACGC	2 cut(s)	13, 124
Csp6I	GTAC	1 cut(s)	603
CspCI	CAANNNNNGTGG	2 cut(s)	1002, 1037
CviAII	CATG	6 cut(s)	416, 453, 523, 803, 814, 1016
CviQI	GTAC	1 cut(s)	603
DpnI	GATC	5 cut(s)	52, 91, 211, 882, 954
DpnII	GATC	5 cut(s)	50, 89, 209, 880, 952
DrdI	GACNNNNNNGTC	2 cut(s)	23, 511
DseDI	GACNNNNNNGTC	2 cut(s)	23, 511
Eam1104I	CTCTTC	1 cut(s)	422
EarI	CTCTTC	1 cut(s)	422
EciI	GGCGGA	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	522
Eco32I	GATATC	1 cut(s)	572
Eco47I	GGWCC	3 cut(s)	249, 391, 504
Eco57I	CTGAAG	2 cut(s)	683, 884
EcoRII	CCWGG	2 cut(s)	499, 1085
EcoRV	GATATC	1 cut(s)	572
EcoT14I	CCWWGG	1 cut(s)	522
EcoT22I	ATGCAT	2 cut(s)	458, 1021
ErhI	CCWWGG	1 cut(s)	522
FaeI	CATG	6 cut(s)	419, 456, 526, 806, 817, 1019
FalI	AAGNNNNNCTT	2 cut(s)	966, 998
FaqI	GGGAC	3 cut(s)	377, 517, 748
FatI	CATG	6 cut(s)	415, 452, 522, 802, 813, 1015
FauI	CCCGC	1 cut(s)	485
FblI	GTMKAC	1 cut(s)	844
Fnu4HI	GCNGC	5 cut(s)	22, 166, 412, 1047, 1050
FokI	GGATG	1 cut(s)	596
Fsp4HI	GCNGC	5 cut(s)	22, 166, 412, 1047, 1050
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	5 cut(s)	22, 166, 412, 1047, 1050
GsuI	CTGGAG	3 cut(s)	458, 1077, 1170
HaeIII	GGCC	1 cut(s)	473
HapII	CCGG	8 cut(s)	57, 119, 213, 289, 474, 507, 581, 790
HgaI	GACGC	2 cut(s)	13, 124
HhaI	GCGC	1 cut(s)	135
Hin1II	CATG	6 cut(s)	419, 456, 526, 806, 817, 1019
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HincII	GTYRAC	1 cut(s)	387
HindII	GTYRAC	1 cut(s)	387
HinfI	GANTC	8 cut(s)	115, 179, 226, 254, 958, 967, 1124, 1159
HpaII	CCGG	8 cut(s)	57, 119, 213, 289, 474, 507, 581, 790
HphI	GGTGA	4 cut(s)	133, 230, 559, 1213
Hpy166II	GTNNAC	2 cut(s)	387, 845
Hpy188III	TCNNGA	6 cut(s)	154, 437, 575, 837, 964, 1056
Hpy8I	GTNNAC	2 cut(s)	387, 845
Hpy99I	CGWCG	7 cut(s)	29, 50, 103, 140, 155, 262, 265
HpyAV	CCTTC	3 cut(s)	15, 361, 463
HpyCH4III	ACNGT	4 cut(s)	391, 403, 602, 1003
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 453
Hsp92II	CATG	6 cut(s)	419, 456, 526, 806, 817, 1019
HspAI	GCGC	1 cut(s)	133
Kzo9I	GATC	5 cut(s)	50, 89, 209, 880, 952
LmnI	GCTCC	5 cut(s)	189, 349, 421, 804, 1189
Lsp1109I	GCAGC	4 cut(s)	33, 177, 1033, 1036
LweI	GCATC	2 cut(s)	1061, 1092
MaeIII	GTNAC	1 cut(s)	1232
MalI	GATC	5 cut(s)	52, 91, 211, 882, 954
MboI	GATC	5 cut(s)	50, 89, 209, 880, 952
MboII	GAAGA	3 cut(s)	138, 439, 689
MfeI	CAATTG	1 cut(s)	1095
MflI	RGATCY	3 cut(s)	50, 89, 209
MhlI	GDGCHC	1 cut(s)	801
MluCI	AATT	9 cut(s)	94, 141, 158, 550, 593, 704, 910, 1095, 1141
MlyI	GAGTC	2 cut(s)	124, 220
MmeI	TCCRAC	6 cut(s)	28, 63, 118, 187, 570, 747
Mph1103I	ATGCAT	2 cut(s)	458, 1021
MroXI	GAANNNNTTC	2 cut(s)	145, 1163
MseI	TTAA	3 cut(s)	776, 908, 1139
MspI	CCGG	8 cut(s)	57, 119, 213, 289, 474, 507, 581, 790
MspR9I	CCNGG	4 cut(s)	475, 501, 791, 1087
MunI	CAATTG	1 cut(s)	1095
MvaI	CCWGG	2 cut(s)	501, 1087
MvnI	CGCG	2 cut(s)	135, 155
MwoI	GCNNNNNNNGC	2 cut(s)	109, 453
NciI	CCSGG	2 cut(s)	475, 791
NcoI	CCATGG	1 cut(s)	522
NdeII	GATC	5 cut(s)	50, 89, 209, 880, 952
NlaIII	CATG	6 cut(s)	419, 456, 526, 806, 817, 1019
NlaIV	GGNNCC	6 cut(s)	52, 211, 293, 393, 505, 579
NruI	TCGCGA	1 cut(s)	155
NsiI	ATGCAT	2 cut(s)	458, 1021
NspI	RCATGY	1 cut(s)	1019
PcsI	WCGNNNNNNNCGW	1 cut(s)	263
PdmI	GAANNNNTTC	2 cut(s)	145, 1163
PfeI	GAWTC	6 cut(s)	179, 254, 958, 967, 1124, 1159
PfoI	TCCNGGA	1 cut(s)	1085
PkrI	GCNGC	5 cut(s)	23, 167, 413, 1048, 1051
PleI	GAGTC	2 cut(s)	123, 220
PpsI	GAGTC	2 cut(s)	123, 220
PsiI	TTATAA	1 cut(s)	929
Psp6I	CCWGG	2 cut(s)	499, 1085
PspGI	CCWGG	2 cut(s)	499, 1085
PspN4I	GGNNCC	6 cut(s)	52, 211, 293, 393, 505, 579
PspPI	GGNCC	3 cut(s)	249, 391, 504
PsuI	RGATCY	3 cut(s)	50, 89, 209
RruI	TCGCGA	1 cut(s)	155
RsaI	GTAC	1 cut(s)	604
RsaNI	GTAC	1 cut(s)	603
SaqAI	TTAA	3 cut(s)	776, 908, 1139
SatI	GCNGC	5 cut(s)	22, 166, 412, 1047, 1050
Sau3AI	GATC	5 cut(s)	50, 89, 209, 880, 952
Sau96I	GGNCC	3 cut(s)	249, 391, 504
SchI	GAGTC	2 cut(s)	124, 220
ScrFI	CCNGG	4 cut(s)	475, 501, 791, 1087
SduI	GDGCHC	1 cut(s)	801
SfaNI	GCATC	2 cut(s)	1061, 1092
SinI	GGWCC	3 cut(s)	249, 391, 504
SmlI	CTYRAG	2 cut(s)	835, 962
SmoI	CTYRAG	2 cut(s)	835, 962
Sse9I	AATT	9 cut(s)	94, 141, 158, 550, 593, 704, 910, 1095, 1141
SsiI	CCGC	6 cut(s)	19, 54, 216, 238, 412, 492
StyD4I	CCNGG	4 cut(s)	473, 499, 789, 1085
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	4 cut(s)	391, 403, 602, 1003
TaqI	TCGA	3 cut(s)	27, 177, 870
TasI	AATT	9 cut(s)	94, 141, 158, 550, 593, 704, 910, 1095, 1141
TatI	WGTACW	1 cut(s)	602
TauI	GCSGC	1 cut(s)	414
TfiI	GAWTC	6 cut(s)	179, 254, 958, 967, 1124, 1159
Tru1I	TTAA	3 cut(s)	776, 908, 1139
Tru9I	TTAA	3 cut(s)	776, 908, 1139
TscAI	CASTG	3 cut(s)	304, 801, 1006
TseI	GCWGC	4 cut(s)	21, 165, 1046, 1049
TspDTI	ATGAA	4 cut(s)	122, 284, 802, 1134
TspGWI	ACGGA	2 cut(s)	94, 139
TspRI	CASTG	3 cut(s)	304, 801, 1006
VpaK11BI	GGWCC	3 cut(s)	249, 391, 504
XapI	RAATTY	2 cut(s)	141, 1141
XceI	RCATGY	1 cut(s)	1019
XmiI	GTMKAC	1 cut(s)	844
XmnI	GAANNNNTTC	2 cut(s)	145, 1163
Zsp2I	ATGCAT	2 cut(s)	458, 1021

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.