Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002119

Physical Location & Seq

Genomic Coordinates Reverse (-)

54148928 .. 54149809

Gene Structure 882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0394800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGAATGTCGCTTCAATTGCAGGCAAGTATCTGGATTTTGATCAGAAGCTATTTGATCACAAAGGCCTGATTAGGGTTCATGTAGCACATGTTATATCCCAACCCTTCTTTCTGAAACGTACGCTGAAACTGATTCCTGGCCTCTCTGATCTTCGCTTTCAAAATGGGACCTTTCGGTTCCATGGAGTTCAGGCCCCCATACTGCCATCTATTGCTCGAAATCTGTTTGGTGCTCCCTCTGCACACAAACCTCGATGTCCAATTGTCATTAGGAATGAAGATGTCAAGCCTGAAGCGGCAAATACTATGCTAGCTTTACCTCCTATTGAAACAGACCAAGCTGGGGTCAAGAAAGGACATCCATCCTCACCATTCACATCCCTTACAAAGATGAAAATTCTTTTTGGAGAAAGTAGTCAGGCTACAAGCCCATCTATGCTCCAAAAGAAGCTGAAGGTGCCGAAATTCCACACCAAATTCTCTGCCAAGTCTCTTGGCCTGATTGAGGCTCCAGGAGGAATCTTGATTCCTAAGGAAGGACCTATCCAAAAAGAAGACATGCAGCTGATCAAGAAGAAGAAAGGAAGGCCTCTAGGGTCGAAAAACAAGAACCCCTCCAAGAGTAAGAAAGTGACTGCTGAAGATGTGCTGAGTGTCATCTGCCCTAGCAAACCTCCAAGCCCTAGTGTTAAGGGCAAGGAGAAAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

236

Amino Acids

25.81

Weight (kDa)

10.19

Isoelectric Point (pI)

44.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07270 AT1G07270 AT2G29680 AT2G29680
fragaria_vesca	FvH4_3g38340 FvH4_3g38340 FvH4_3g38340 FvH4_3g38340 FvH4_3g38340
malus_domestica	MD03G1072700.v1.1 MD11G1078800.v1.1
prunus_persica	Prupe.6G059500_v2.0.a1
pyrus_communis	pycom03g05890 pycom11g06590
rosa_chinensis	RchiOBHm_Chr2g0157131 RchiOBHm_Chr4g0399271 RchiOBHm_Chr5g0068951
rosa_laevigata	RLG00000020961 RLG00000036023
rosa_multiflora	Rmu_sc0001960.1_g000002 Rmu_sc0003822.1_g000023 Rmu_sc0010302.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011800 Rroxscaffold_1G00029470 Rroxscaffold_2G00092520
rosa_rugosa	Rorug01G0058900 Rorug01G0059000 Rorug01G0059100 Rorug01G0059200 Rorug05G0394800 Rorug07G0214100 Rorug07G0214200 Rorug07G0214300
rosa_samantha	Rh2BG537600 Rh2DG546400 Rh4AG092800 Rh4CG101200 Rh5BG470900 Rh5CG493400 Rh7BG347600
rosa_wichuraiana	Rw2G031040 Rw2G043260 Rw4G007640 Rw5G042190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	457
AciI	CCGC	1 cut(s)	296
AcsI	RAATTY	4 cut(s)	396, 464, 476, 705
AcuI	CTGAAG	3 cut(s)	312, 473, 660
AfaI	GTAC	1 cut(s)	121
AfiI	CCNNNNNNNGG	4 cut(s)	73, 343, 505, 536
AflIII	ACRYGT	1 cut(s)	88
AgsI	TTSAA	3 cut(s)	15, 161, 329
AjnI	CCWGG	2 cut(s)	136, 511
AjuI	GAANNNNNNNTTGG	2 cut(s)	93, 125
AluBI	AGCT	5 cut(s)	49, 314, 341, 451, 565
AluI	AGCT	5 cut(s)	49, 314, 341, 451, 565
Alw21I	GWGCWC	1 cut(s)	235
Alw26I	GTCTC	1 cut(s)	495
AoxI	GGCC	5 cut(s)	64, 139, 192, 496, 587
ApeKI	GCWGC	1 cut(s)	562
ApoI	RAATTY	4 cut(s)	396, 464, 476, 705
AspS9I	GGNCC	3 cut(s)	168, 193, 539
AsuHPI	GGTGA	1 cut(s)	360
AsuNHI	GCTAGC	1 cut(s)	310
AvaII	GGWCC	2 cut(s)	168, 539
AxyI	CCTNAGG	1 cut(s)	531
BanI	GGYRCC	1 cut(s)	457
BbsI	GAAGAC	1 cut(s)	561
Bbv12I	GWGCWC	1 cut(s)	235
BbvI	GCAGC	1 cut(s)	574
BccI	CCATC	3 cut(s)	214, 370, 439
BciT130I	CCWGG	2 cut(s)	138, 513
BclI	TGATCA	3 cut(s)	40, 55, 567
BcoDI	GTCTC	1 cut(s)	495
BfaI	CTAG	4 cut(s)	311, 593, 666, 684
BisI	GCNGC	2 cut(s)	297, 563
BlsI	GCNGC	2 cut(s)	298, 564
Bme1390I	CCNGG	2 cut(s)	138, 513
Bme18I	GGWCC	2 cut(s)	168, 539
BmgT120I	GGNCC	3 cut(s)	168, 193, 539
BmiI	GGNNCC	5 cut(s)	169, 179, 195, 459, 510
BmrFI	CCNGG	2 cut(s)	138, 513
BmtI	GCTAGC	1 cut(s)	314
BpiI	GAAGAC	1 cut(s)	561
BpmI	CTGGAG	1 cut(s)	495
BsaBI	GATNNNNATC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	4 cut(s)	73, 343, 505, 536
Bse21I	CCTNAGG	1 cut(s)	531
Bse8I	GATNNNNATC	1 cut(s)	39
BseBI	CCWGG	2 cut(s)	138, 513
BseDI	CCNNGG	1 cut(s)	181
BseGI	GGATG	3 cut(s)	358, 362, 377
BseJI	GATNNNNATC	1 cut(s)	39
BseLI	CCNNNNNNNGG	4 cut(s)	73, 343, 505, 536
BseMII	CTCAG	1 cut(s)	641
BseXI	GCAGC	1 cut(s)	574
BseYI	CCCAGC	1 cut(s)	341
BsgI	GTGCAG	1 cut(s)	225
BshFI	GGCC	5 cut(s)	66, 141, 194, 498, 589
BshNI	GGYRCC	1 cut(s)	457
BsiHKAI	GWGCWC	1 cut(s)	235
BsiWI	CGTACG	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	181
BslI	CCNNNNNNNGG	4 cut(s)	73, 343, 505, 536
BsmAI	GTCTC	1 cut(s)	495
BsmFI	GGGAC	1 cut(s)	181
BsnI	GGCC	5 cut(s)	66, 141, 194, 498, 589
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp143I	GATC	4 cut(s)	40, 55, 148, 567
Bsp19I	CCATGG	1 cut(s)	181
BspACI	CCGC	1 cut(s)	296
BspANI	GGCC	5 cut(s)	66, 141, 194, 498, 589
BspCNI	CTCAG	1 cut(s)	642
BspLI	GGNNCC	5 cut(s)	169, 179, 195, 459, 510
BspOI	GCTAGC	1 cut(s)	314
BspT107I	GGYRCC	1 cut(s)	457
BssECI	CCNNGG	1 cut(s)	181
BssMI	GATC	4 cut(s)	40, 55, 148, 567
BssT1I	CCWWGG	1 cut(s)	181
Bst2UI	CCWGG	2 cut(s)	138, 513
BstC8I	GCNNGC	2 cut(s)	22, 312
BstDEI	CTNAG	2 cut(s)	531, 650
BstDSI	CCRYGG	1 cut(s)	181
BstENI	CCTNNNNNAGG	2 cut(s)	503, 534
BstF5I	GGATG	3 cut(s)	358, 362, 377
BstKTI	GATC	4 cut(s)	43, 58, 151, 570
BstMAI	GTCTC	1 cut(s)	495
BstMBI	GATC	4 cut(s)	40, 55, 148, 567
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 239, 457
BstNI	CCWGG	2 cut(s)	138, 513
BstNSI	RCATGY	2 cut(s)	92, 562
BstSCI	CCNGG	2 cut(s)	136, 511
BstV1I	GCAGC	1 cut(s)	574
BstV2I	GAAGAC	1 cut(s)	561
Bsu36I	CCTNAGG	1 cut(s)	531
BsuRI	GGCC	5 cut(s)	66, 141, 194, 498, 589
BtgI	CCRYGG	1 cut(s)	181
BtsCI	GGATG	3 cut(s)	358, 362, 377
Cac8I	GCNNGC	2 cut(s)	22, 312
Cfr13I	GGNCC	3 cut(s)	168, 193, 539
Csp6I	GTAC	1 cut(s)	120
CviAII	CATG	4 cut(s)	80, 89, 182, 559
CviQI	GTAC	1 cut(s)	120
DdeI	CTNAG	2 cut(s)	531, 650
DpnI	GATC	4 cut(s)	42, 57, 150, 569
DpnII	GATC	4 cut(s)	40, 55, 148, 567
Eco130I	CCWWGG	1 cut(s)	181
Eco147I	AGGCCT	2 cut(s)	66, 589
Eco47I	GGWCC	2 cut(s)	168, 539
Eco57I	CTGAAG	3 cut(s)	312, 473, 660
Eco81I	CCTNAGG	1 cut(s)	531
EcoNI	CCTNNNNNAGG	2 cut(s)	503, 534
EcoO109I	RGGNCCY	3 cut(s)	168, 193, 539
EcoRII	CCWGG	2 cut(s)	136, 511
EcoT14I	CCWWGG	1 cut(s)	181
ErhI	CCWWGG	1 cut(s)	181
FaeI	CATG	4 cut(s)	83, 92, 185, 562
FaiI	YATR	8 cut(s)	81, 90, 95, 183, 200, 308, 437, 560
FaqI	GGGAC	1 cut(s)	181
FatI	CATG	4 cut(s)	79, 88, 181, 558
FbaI	TGATCA	3 cut(s)	40, 55, 567
Fnu4HI	GCNGC	2 cut(s)	297, 563
FokI	GGATG	3 cut(s)	345, 349, 364
Fsp4HI	GCNGC	2 cut(s)	297, 563
FspBI	CTAG	4 cut(s)	311, 593, 666, 684
GluI	GCNGC	2 cut(s)	297, 563
GsaI	CCCAGC	1 cut(s)	345
GsuI	CTGGAG	1 cut(s)	495
HaeIII	GGCC	5 cut(s)	66, 141, 194, 498, 589
Hin1II	CATG	4 cut(s)	83, 92, 185, 562
HinfI	GANTC	3 cut(s)	133, 519, 526
HphI	GGTGA	1 cut(s)	360
Hpy188I	TCNGA	3 cut(s)	45, 114, 148
Hpy188III	TCNNGA	4 cut(s)	32, 349, 523, 571
HpyAV	CCTTC	4 cut(s)	115, 448, 530, 579
HpyCH4IV	ACGT	1 cut(s)	118
HpyCH4V	TGCA	3 cut(s)	20, 242, 562
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 239, 457
HpyF3I	CTNAG	2 cut(s)	531, 650
HpySE526I	ACGT	1 cut(s)	118
Hsp92II	CATG	4 cut(s)	83, 92, 185, 562
Ksp22I	TGATCA	3 cut(s)	40, 55, 567
Kzo9I	GATC	4 cut(s)	40, 55, 148, 567
LmnI	GCTCC	3 cut(s)	238, 444, 514
Lsp1109I	GCAGC	1 cut(s)	574
MaeI	CTAG	4 cut(s)	311, 593, 666, 684
MaeII	ACGT	1 cut(s)	118
MaeIII	GTNAC	1 cut(s)	631
MalI	GATC	4 cut(s)	42, 57, 150, 569
MboI	GATC	4 cut(s)	40, 55, 148, 567
MboII	GAAGA	6 cut(s)	143, 290, 566, 586, 589, 653
MfeI	CAATTG	2 cut(s)	15, 261
MhlI	GDGCHC	1 cut(s)	235
MluCI	AATT	6 cut(s)	15, 261, 396, 464, 476, 705
MseI	TTAA	1 cut(s)	690
MspA1I	CMGCKG	1 cut(s)	565
MspR9I	CCNGG	2 cut(s)	138, 513
MunI	CAATTG	2 cut(s)	15, 261
MvaI	CCWGG	2 cut(s)	138, 513
MwoI	GCNNNNNNNGC	3 cut(s)	17, 239, 457
NcoI	CCATGG	1 cut(s)	181
NdeII	GATC	4 cut(s)	40, 55, 148, 567
NheI	GCTAGC	1 cut(s)	310
NlaIII	CATG	4 cut(s)	83, 92, 185, 562
NlaIV	GGNNCC	5 cut(s)	169, 179, 195, 459, 510
NmuCI	GTSAC	1 cut(s)	631
NspI	RCATGY	2 cut(s)	92, 562
PceI	AGGCCT	2 cut(s)	66, 589
PciI	ACATGT	1 cut(s)	88
PfeI	GAWTC	3 cut(s)	133, 519, 526
Pfl23II	CGTACG	1 cut(s)	119
PfoI	TCCNGGA	1 cut(s)	511
PkrI	GCNGC	2 cut(s)	298, 564
PpuMI	RGGWCCY	2 cut(s)	168, 539
PscI	ACATGT	1 cut(s)	88
Psp5II	RGGWCCY	2 cut(s)	168, 539
Psp6I	CCWGG	2 cut(s)	136, 511
PspFI	CCCAGC	1 cut(s)	341
PspGI	CCWGG	2 cut(s)	136, 511
PspLI	CGTACG	1 cut(s)	119
PspN4I	GGNNCC	5 cut(s)	169, 179, 195, 459, 510
PspPI	GGNCC	3 cut(s)	168, 193, 539
PspPPI	RGGWCCY	2 cut(s)	168, 539
PvuII	CAGCTG	1 cut(s)	565
RsaI	GTAC	1 cut(s)	121
RsaNI	GTAC	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	690
SatI	GCNGC	2 cut(s)	297, 563
Sau3AI	GATC	4 cut(s)	40, 55, 148, 567
Sau96I	GGNCC	3 cut(s)	168, 193, 539
ScrFI	CCNGG	2 cut(s)	138, 513
SduI	GDGCHC	1 cut(s)	235
SinI	GGWCC	2 cut(s)	168, 539
Sse9I	AATT	6 cut(s)	15, 261, 396, 464, 476, 705
SseBI	AGGCCT	2 cut(s)	66, 589
SsiI	CCGC	1 cut(s)	296
SspMI	CTAG	4 cut(s)	311, 593, 666, 684
StuI	AGGCCT	2 cut(s)	66, 589
StyD4I	CCNGG	2 cut(s)	136, 511
StyI	CCWWGG	1 cut(s)	181
TaiI	ACGT	1 cut(s)	121
TaqI	TCGA	3 cut(s)	217, 253, 599
TasI	AATT	6 cut(s)	15, 261, 396, 464, 476, 705
TauI	GCSGC	1 cut(s)	299
TfiI	GAWTC	3 cut(s)	133, 519, 526
Tru1I	TTAA	1 cut(s)	690
Tru9I	TTAA	1 cut(s)	690
TseFI	GTSAC	1 cut(s)	631
TseI	GCWGC	1 cut(s)	562
Tsp45I	GTSAC	1 cut(s)	631
TspDTI	ATGAA	4 cut(s)	17, 68, 291, 407
VpaK11BI	GGWCC	2 cut(s)	168, 539
XagI	CCTNNNNNAGG	2 cut(s)	503, 534
XapI	RAATTY	4 cut(s)	396, 464, 476, 705
XceI	RCATGY	2 cut(s)	92, 562
XspI	CTAG	4 cut(s)	311, 593, 666, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.