Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002258

Physical Location & Seq

Genomic Coordinates Forward (+)

12286487 .. 12287897

Gene Structure 1411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022792

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGAACAATGTGAGTGTAGAGGATGGCAATAGAGACGTGGAAGCTGTCAATGTAGAAGATGGTGAAAAAAGAAAGAAGAAGAGGGCCGATTCAGAAAAGCATGTTAATATTGAGGATATAGCAAGCCTCAATGTAGAAGATGGTAAAAAAAGGAACAAAAAGAAGGCCAAATCAGAGAAACATGCTAATGTAGAGGATGGCAATAAAGATATGGAAGCAGTCAACGTAGAAGATGATAAAGAAAGAAAGAAGAAGAGGGCCAAGTCAGAAAAGCATGTTATTGTAGAGGATGACAATAGAGACGTTGAGGCTGTCAATGTAGAAGATGGAAAACTAACGAAGAACAAGGCAGAATCAGAGAAACTTGTTCTAGAGGATATCAACAGAGACATGGAGACTGTTAATGTGGAAGATGCTAACAGAAGGAAGAAGAAGAAAGCCAAGGCAGAAAAACATGTTCATATAGAGGATTGCAACAATAACACAGAGGCTGTTAATGTGGAGGCTTCTGATGGCCCAAGTGATGAGCATCAAGGTCCGGAAAGAGGGGCTGACGGCCTTGACATGGTACTCCATTGTGATCCCACCCCTAAAGTCATTGATTGTTGGAAGGTAATTGGGAAAGCCATACCTTTGAGGCCTTCTAAGAGTGTATATTATCGAGCCCATGTTTTGTTTGAAAGAGCCGGGAAACCTGCTTGGACCCCCGAAGAGTACGAAGAGGTGAGAAAGTTCCATAGAGAACATGGAAATGATTGGAGAACTTTGGGTGCTAAACTTGGCAAACATAGAATTCATGTCAAGGAAGCATGGCGTCGATTAAAACTGCCAAATCATAGGAAAGGACCTTGGTTCCAAGAGGAGTACCAGACTTTATTTGATTTAGTGAATAAGGATCCGCTTGTGAGGGCCTTAGAAAAAAGAAGAAGACCAAGCATGGCAATGCTGCTAGATAATATTTGCTGGGAAGCAATTAGCGACAAGTTGGGCTGCTCGATGCTCTCACTAATTAAGTTGGAGGCTAGCTCTGTTGAAGATGTAGATTGGGATGATCTGCTTGAGCATAGGCCTGGAGATGTATGCCGACGGGATGAAATGGTTAAACACATTGGTGAACATGCTTTCGAGTCATTTCCTGAACAAGCTAGTGGCAGTTTTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

388

Amino Acids

44.49

Weight (kDa)

6.19

Isoelectric Point (pI)

44.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	231 - 274	2e-06	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	234 - 292	1.4e-12	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41020
fragaria_vesca	FvH4_3g31460 FvH4_3g31460 FvH4_3g31460
malus_domestica	MD04G1037700.v1.1
prunus_persica	Prupe.6G106700_v2.0.a1 Prupe.6G106700_v2.0.a1 Prupe.6G106700_v2.0.a1 Prupe.6G210800_v2.0.a1
pyrus_communis	pycom04g03080
rosa_chinensis	RchiOBHm_Chr5g0058161 RchiOBHm_Chr7g0222751 RchiOBHm_Chr7g0222761 RchiOBHm_Chr7g0227601
rosa_laevigata	RLG00000002025 RLG00000022792 RLG00000035196
rosa_multiflora	Rmu_sc0000367.1_g000018 Rmu_sc0001772.1_g000006 Rmu_sc0002881.1_g000007 Rmu_sc0004507.1_g000034
rosa_roxburghii	Rroxscaffold_1G00022430 Rroxscaffold_6G00392510
rosa_rugosa	Rorug05G0311800 Rorug05G0311900 Rorug05G0312000 Rorug05G0312100 Rorug07G0214100
rosa_samantha	Rh3DG213100 Rh5AG380100 Rh5BG391100 Rh5CG415000 Rh5DG405800 Rh7AG356500 Rh7BG347500 Rh7BG349300 Rh7CG374000 Rh7DG351000 Rh7DG391500
rosa_wichuraiana	Rw3G017260 Rw5G035770 Rw7G030250 Rw7G032910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	703
AccIII	TCCGGA	1 cut(s)	538
AciI	CCGC	1 cut(s)	899
AclWI	GGATC	3 cut(s)	575, 890, 903
AcsI	RAATTY	1 cut(s)	792
AcyI	GRCGYC	1 cut(s)	814
AfaI	GTAC	3 cut(s)	570, 716, 866
AfiI	CCNNNNNNNGG	2 cut(s)	545, 565
AflIII	ACRYGT	1 cut(s)	454
AgsI	TTSAA	2 cut(s)	680, 1034
AjiI	CACGTC	1 cut(s)	37
AjnI	CCWGG	1 cut(s)	1069
AleI	CACNNNNGTG	1 cut(s)	1110
AluBI	AGCT	3 cut(s)	44, 1026, 1145
AluI	AGCT	3 cut(s)	44, 1026, 1145
Alw26I	GTCTC	4 cut(s)	27, 294, 381, 389
AlwI	GGATC	3 cut(s)	575, 890, 903
AlwNI	CAGNNNCTG	1 cut(s)	491
Aor13HI	TCCGGA	1 cut(s)	538
AoxI	GGCC	8 cut(s)	84, 165, 258, 514, 556, 638, 909, 1067
ApeKI	GCWGC	2 cut(s)	946, 990
ApoI	RAATTY	1 cut(s)	792
AspS9I	GGNCC	7 cut(s)	84, 258, 515, 536, 702, 845, 909
AsuC2I	CCSGG	1 cut(s)	688
AsuHPI	GGTGA	3 cut(s)	74, 736, 1124
AsuNHI	GCTAGC	1 cut(s)	1022
AvaII	GGWCC	3 cut(s)	536, 702, 845
BamHI	GGATCC	1 cut(s)	895
BanII	GRGCYC	1 cut(s)	667
BbsI	GAAGAC	1 cut(s)	934
BbvI	GCAGC	2 cut(s)	933, 977
BccI	CCATC	6 cut(s)	17, 53, 134, 191, 320, 506
BceAI	ACGGC	1 cut(s)	571
BciT130I	CCWGG	1 cut(s)	1071
BcnI	CCSGG	1 cut(s)	688
BcoDI	GTCTC	4 cut(s)	27, 294, 381, 389
BfaI	CTAG	4 cut(s)	371, 950, 1023, 1146
BfuAI	ACCTGC	1 cut(s)	703
BisI	GCNGC	2 cut(s)	947, 991
BlsI	GCNGC	2 cut(s)	948, 992
Bme1390I	CCNGG	2 cut(s)	688, 1071
Bme18I	GGWCC	3 cut(s)	536, 702, 845
BmgBI	CACGTC	1 cut(s)	37
BmgT120I	GGNCC	7 cut(s)	84, 258, 515, 536, 702, 845, 909
BmiI	GGNNCC	3 cut(s)	704, 854, 897
BmrFI	CCNGG	2 cut(s)	688, 1071
BmsI	GCATC	3 cut(s)	403, 538, 987
BmtI	GCTAGC	1 cut(s)	1026
BpiI	GAAGAC	1 cut(s)	934
BplI	GAGNNNNNCTC	2 cut(s)	1010, 1042
BpmI	CTGGAG	1 cut(s)	1092
BpuEI	CTTGAG	1 cut(s)	1079
BpuMI	CCSGG	1 cut(s)	688
BsaBI	GATNNNNATC	1 cut(s)	528
BsaHI	GRCGYC	1 cut(s)	814
BsaJI	CCNNGG	2 cut(s)	441, 848
BsaWI	WCCGGW	1 cut(s)	538
Bsc4I	CCNNNNNNNGG	2 cut(s)	545, 565
Bse3DI	GCAATG	1 cut(s)	948
Bse8I	GATNNNNATC	1 cut(s)	528
BseAI	TCCGGA	1 cut(s)	538
BseBI	CCWGG	1 cut(s)	1071
BseDI	CCNNGG	2 cut(s)	441, 848
BseGI	GGATG	5 cut(s)	28, 202, 295, 1054, 1096
BseJI	GATNNNNATC	1 cut(s)	528
BseLI	CCNNNNNNNGG	2 cut(s)	545, 565
BseMI	GCAATG	1 cut(s)	948
BseRI	GAGGAG	1 cut(s)	875
BseXI	GCAGC	2 cut(s)	933, 977
BseYI	CCCAGC	1 cut(s)	963
BshFI	GGCC	8 cut(s)	86, 167, 260, 516, 558, 640, 911, 1069
BsiSI	CCGG	2 cut(s)	539, 687
BslI	CCNNNNNNNGG	2 cut(s)	545, 565
BsmAI	GTCTC	4 cut(s)	27, 294, 381, 389
BsmBI	CGTCTC	2 cut(s)	27, 294
BsnI	GGCC	8 cut(s)	86, 167, 260, 516, 558, 640, 911, 1069
Bsp1286I	GDGCHC	1 cut(s)	667
Bsp13I	TCCGGA	1 cut(s)	538
Bsp143I	GATC	3 cut(s)	580, 895, 1051
BspACI	CCGC	1 cut(s)	899
BspANI	GGCC	8 cut(s)	86, 167, 260, 516, 558, 640, 911, 1069
BspEI	TCCGGA	1 cut(s)	538
BspLI	GGNNCC	3 cut(s)	704, 854, 897
BspMI	ACCTGC	1 cut(s)	703
BspOI	GCTAGC	1 cut(s)	1026
BspPI	GGATC	3 cut(s)	575, 890, 903
BsrDI	GCAATG	1 cut(s)	948
BssECI	CCNNGG	2 cut(s)	441, 848
BssMI	GATC	3 cut(s)	580, 895, 1051
BssNI	GRCGYC	1 cut(s)	814
BssT1I	CCWWGG	2 cut(s)	441, 848
Bst2UI	CCWGG	1 cut(s)	1071
Bst4CI	ACNGT	1 cut(s)	400
Bst6I	CTCTTC	4 cut(s)	74, 248, 705, 714
BstACI	GRCGYC	1 cut(s)	814
BstC8I	GCNNGC	2 cut(s)	124, 1024
BstDEI	CTNAG	2 cut(s)	645, 913
BstF5I	GGATG	5 cut(s)	28, 202, 295, 1054, 1096
BstKTI	GATC	3 cut(s)	583, 898, 1054
BstMAI	GTCTC	4 cut(s)	27, 294, 381, 389
BstMBI	GATC	3 cut(s)	580, 895, 1051
BstNI	CCWGG	1 cut(s)	1071
BstNSI	RCATGY	5 cut(s)	104, 185, 278, 458, 1121
BstSCI	CCNGG	2 cut(s)	686, 1069
BstV1I	GCAGC	2 cut(s)	933, 977
BstV2I	GAAGAC	1 cut(s)	934
BstX2I	RGATCY	1 cut(s)	895
BstYI	RGATCY	1 cut(s)	895
BsuRI	GGCC	8 cut(s)	86, 167, 260, 516, 558, 640, 911, 1069
BtrI	CACGTC	1 cut(s)	37
BtsCI	GGATG	5 cut(s)	28, 202, 295, 1054, 1096
BveI	ACCTGC	1 cut(s)	703
Cac8I	GCNNGC	2 cut(s)	124, 1024
CaiI	CAGNNNCTG	1 cut(s)	491
Cfr13I	GGNCC	7 cut(s)	84, 258, 515, 536, 702, 845, 909
CseI	GACGC	1 cut(s)	803
Csp6I	GTAC	3 cut(s)	569, 715, 865
CviQI	GTAC	3 cut(s)	569, 715, 865
DdeI	CTNAG	2 cut(s)	645, 913
DpnI	GATC	3 cut(s)	582, 897, 1053
DpnII	GATC	3 cut(s)	580, 895, 1051
Eam1104I	CTCTTC	4 cut(s)	74, 248, 705, 714
EarI	CTCTTC	4 cut(s)	74, 248, 705, 714
Eco130I	CCWWGG	2 cut(s)	441, 848
Eco147I	AGGCCT	2 cut(s)	640, 1069
Eco24I	GRGCYC	1 cut(s)	667
Eco32I	GATATC	1 cut(s)	379
Eco47I	GGWCC	3 cut(s)	536, 702, 845
EcoO109I	RGGNCCY	2 cut(s)	845, 909
EcoRI	GAATTC	1 cut(s)	792
EcoRII	CCWGG	1 cut(s)	1069
EcoRV	GATATC	1 cut(s)	379
EcoT14I	CCWWGG	2 cut(s)	441, 848
EcoT38I	GRGCYC	1 cut(s)	667
ErhI	CCWWGG	2 cut(s)	441, 848
Esp3I	CGTCTC	2 cut(s)	27, 294
Fnu4HI	GCNGC	2 cut(s)	947, 991
FokI	GGATG	5 cut(s)	35, 209, 302, 1061, 1103
FriOI	GRGCYC	1 cut(s)	667
Fsp4HI	GCNGC	2 cut(s)	947, 991
FspBI	CTAG	4 cut(s)	371, 950, 1023, 1146
GluI	GCNGC	2 cut(s)	947, 991
GsaI	CCCAGC	1 cut(s)	967
GsuI	CTGGAG	1 cut(s)	1092
HaeIII	GGCC	8 cut(s)	86, 167, 260, 516, 558, 640, 911, 1069
HapII	CCGG	2 cut(s)	539, 687
HgaI	GACGC	1 cut(s)	803
Hin1I	GRCGYC	1 cut(s)	814
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	3 cut(s)	89, 353, 1127
HpaII	CCGG	2 cut(s)	539, 687
HphI	GGTGA	3 cut(s)	74, 736, 1124
Hpy166II	GTNNAC	2 cut(s)	223, 1115
Hpy188I	TCNGA	5 cut(s)	94, 175, 268, 358, 511
Hpy188III	TCNNGA	3 cut(s)	371, 539, 1136
Hpy8I	GTNNAC	2 cut(s)	223, 1115
Hpy99I	CGWCG	2 cut(s)	819, 1089
HpyAV	CCTTC	4 cut(s)	157, 417, 604, 651
HpyCH4III	ACNGT	1 cut(s)	400
HpyCH4IV	ACGT	3 cut(s)	36, 225, 303
HpyCH4V	TGCA	1 cut(s)	474
HpyF3I	CTNAG	2 cut(s)	645, 913
HpySE526I	ACGT	3 cut(s)	36, 225, 303
Hsp92I	GRCGYC	1 cut(s)	814
Kpn2I	TCCGGA	1 cut(s)	538
Kzo9I	GATC	3 cut(s)	580, 895, 1051
LpnPI	CCDG	8 cut(s)	552, 700, 708, 881, 949, 1056, 1083, 1149
Lsp1109I	GCAGC	2 cut(s)	933, 977
LweI	GCATC	3 cut(s)	403, 538, 987
MaeI	CTAG	4 cut(s)	371, 950, 1023, 1146
MaeII	ACGT	3 cut(s)	36, 225, 303
MalI	GATC	3 cut(s)	582, 897, 1053
MboI	GATC	3 cut(s)	580, 895, 1051
MflI	RGATCY	1 cut(s)	895
MhlI	GDGCHC	1 cut(s)	667
MluCI	AATT	4 cut(s)	615, 792, 972, 1008
MlyI	GAGTC	1 cut(s)	1136
MmeI	TCCRAC	2 cut(s)	587, 996
MroI	TCCGGA	1 cut(s)	538
MseI	TTAA	6 cut(s)	105, 402, 495, 821, 1011, 1101
MslI	CAYNNNNRTG	4 cut(s)	186, 750, 941, 1110
MspI	CCGG	2 cut(s)	539, 687
MspR9I	CCNGG	2 cut(s)	688, 1071
MvaI	CCWGG	1 cut(s)	1071
NciI	CCSGG	1 cut(s)	688
NdeII	GATC	3 cut(s)	580, 895, 1051
NheI	GCTAGC	1 cut(s)	1022
NlaIV	GGNNCC	3 cut(s)	704, 854, 897
NspI	RCATGY	5 cut(s)	104, 185, 278, 458, 1121
OliI	CACNNNNGTG	1 cut(s)	1110
PceI	AGGCCT	2 cut(s)	640, 1069
PciI	ACATGT	1 cut(s)	454
PfeI	GAWTC	2 cut(s)	89, 353
PkrI	GCNGC	2 cut(s)	948, 992
PleI	GAGTC	1 cut(s)	1135
PpsI	GAGTC	1 cut(s)	1135
PpuMI	RGGWCCY	1 cut(s)	845
PscI	ACATGT	1 cut(s)	454
Psp5II	RGGWCCY	1 cut(s)	845
Psp6I	CCWGG	1 cut(s)	1069
PspFI	CCCAGC	1 cut(s)	963
PspGI	CCWGG	1 cut(s)	1069
PspN4I	GGNNCC	3 cut(s)	704, 854, 897
PspPI	GGNCC	7 cut(s)	84, 258, 515, 536, 702, 845, 909
PspPPI	RGGWCCY	1 cut(s)	845
PstNI	CAGNNNCTG	1 cut(s)	491
PsuI	RGATCY	1 cut(s)	895
RsaI	GTAC	3 cut(s)	570, 716, 866
RsaNI	GTAC	3 cut(s)	569, 715, 865
RseI	CAYNNNNRTG	4 cut(s)	186, 750, 941, 1110
SaqAI	TTAA	6 cut(s)	105, 402, 495, 821, 1011, 1101
SatI	GCNGC	2 cut(s)	947, 991
Sau3AI	GATC	3 cut(s)	580, 895, 1051
Sau96I	GGNCC	7 cut(s)	84, 258, 515, 536, 702, 845, 909
SchI	GAGTC	1 cut(s)	1136
ScrFI	CCNGG	2 cut(s)	688, 1071
SduI	GDGCHC	1 cut(s)	667
SfaNI	GCATC	3 cut(s)	403, 538, 987
SinI	GGWCC	3 cut(s)	536, 702, 845
SmiMI	CAYNNNNRTG	4 cut(s)	186, 750, 941, 1110
SmlI	CTYRAG	1 cut(s)	1058
SmoI	CTYRAG	1 cut(s)	1058
Sse9I	AATT	4 cut(s)	615, 792, 972, 1008
SseBI	AGGCCT	2 cut(s)	640, 1069
SsiI	CCGC	1 cut(s)	899
SspI	AATATT	2 cut(s)	109, 958
SspMI	CTAG	4 cut(s)	371, 950, 1023, 1146
StuI	AGGCCT	2 cut(s)	640, 1069
StyD4I	CCNGG	2 cut(s)	686, 1069
StyI	CCWWGG	2 cut(s)	441, 848
TaaI	ACNGT	1 cut(s)	400
TaiI	ACGT	3 cut(s)	39, 228, 306
TaqI	TCGA	4 cut(s)	661, 817, 995, 1125
TasI	AATT	4 cut(s)	615, 792, 972, 1008
TfiI	GAWTC	2 cut(s)	89, 353
Tru1I	TTAA	6 cut(s)	105, 402, 495, 821, 1011, 1101
Tru9I	TTAA	6 cut(s)	105, 402, 495, 821, 1011, 1101
TseI	GCWGC	2 cut(s)	946, 990
TspDTI	ATGAA	4 cut(s)	17, 449, 785, 1107
VpaK11BI	GGWCC	3 cut(s)	536, 702, 845
XapI	RAATTY	1 cut(s)	792
XbaI	TCTAGA	1 cut(s)	370
XceI	RCATGY	5 cut(s)	104, 185, 278, 458, 1121
XcmI	CCANNNNNNNNNTGG	1 cut(s)	743
XspI	CTAG	4 cut(s)	371, 950, 1023, 1146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.