Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002258

Physical Location & Seq

Genomic Coordinates Reverse (-)

36430591 .. 36431019

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG349300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGATCTGCGTATGAAGGTTTTTGAAGAAAAGAAAACCAAGCATGGCATGCTGCGAGATAATATTTGCTGGGAGGCAATCAGTGAAACGTTGGGCACTAGAACCAATGTTGTTTGCAGCATGAAGTGGTATAACCAATTAACATCACCTTTGGTAAGCCAAAAGCTGTGGGCTGACATTGACGACTATCGGCTGCTTGATGCTCTCAATAGCTTGGATGCTTGCTGTATTGAAGATGTTGATTGGGATGATCTGCTTGAGCATAGGCCTGGAGATGTTTGCCAAAAGCGATGGCATCAAATGGTCAAACATATTGGTCACCATGGGCTCAAGTCCTTTCCTGAACAAGTGGAAGTTTTATCTAAACGTTATCTTGCCGATTTAATTGAAGCAAGAGAAATCTATGCTAGTAAACCTGCAGTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

142

Amino Acids

16.59

Weight (kDa)

5.66

Isoelectric Point (pI)

47.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41020
fragaria_vesca	FvH4_3g31460 FvH4_3g31460 FvH4_3g31460
malus_domestica	MD04G1037700.v1.1
prunus_persica	Prupe.6G106700_v2.0.a1 Prupe.6G106700_v2.0.a1 Prupe.6G106700_v2.0.a1 Prupe.6G210800_v2.0.a1
pyrus_communis	pycom04g03080
rosa_chinensis	RchiOBHm_Chr5g0058161 RchiOBHm_Chr7g0222751 RchiOBHm_Chr7g0222761 RchiOBHm_Chr7g0227601
rosa_laevigata	RLG00000002025 RLG00000022792 RLG00000035196
rosa_multiflora	Rmu_sc0000367.1_g000018 Rmu_sc0001772.1_g000006 Rmu_sc0002881.1_g000007 Rmu_sc0004507.1_g000034
rosa_roxburghii	Rroxscaffold_1G00022430 Rroxscaffold_6G00392510
rosa_rugosa	Rorug05G0311800 Rorug05G0311900 Rorug05G0312000 Rorug05G0312100 Rorug07G0214100
rosa_samantha	Rh3DG213100 Rh5AG380100 Rh5BG391100 Rh5CG415000 Rh5DG405800 Rh7AG356500 Rh7BG347500 Rh7BG349300 Rh7CG374000 Rh7DG351000 Rh7DG391500
rosa_wichuraiana	Rw3G017260 Rw5G035770 Rw7G030250 Rw7G032910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	424
AclI	AACGTT	2 cut(s)	89, 367
AclWI	GGATC	1 cut(s)	12
AgsI	TTSAA	3 cut(s)	26, 233, 389
AjnI	CCWGG	1 cut(s)	268
AluBI	AGCT	2 cut(s)	166, 213
AluI	AGCT	2 cut(s)	166, 213
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	266
ApeKI	GCWGC	3 cut(s)	52, 117, 193
AsuHPI	GGTGA	2 cut(s)	138, 311
BaeGI	GKGCMC	1 cut(s)	98
BanII	GRGCYC	1 cut(s)	330
BbvI	GCAGC	3 cut(s)	39, 129, 180
BccI	CCATC	1 cut(s)	285
BciT130I	CCWGG	1 cut(s)	270
BfaI	CTAG	2 cut(s)	99, 408
BfmI	CTRYAG	1 cut(s)	417
BfuAI	ACCTGC	1 cut(s)	424
BisI	GCNGC	3 cut(s)	53, 118, 194
BlsI	GCNGC	3 cut(s)	54, 119, 195
Bme1390I	CCNGG	1 cut(s)	270
BmrFI	CCNGG	1 cut(s)	270
BmsI	GCATC	3 cut(s)	190, 208, 304
BpmI	CTGGAG	1 cut(s)	291
BpuEI	CTTGAG	2 cut(s)	278, 314
BsaJI	CCNNGG	1 cut(s)	322
BseBI	CCWGG	1 cut(s)	270
BseDI	CCNNGG	1 cut(s)	322
BseGI	GGATG	2 cut(s)	223, 253
BseSI	GKGCMC	1 cut(s)	98
BseXI	GCAGC	3 cut(s)	39, 129, 180
BseYI	CCCAGC	1 cut(s)	69
BshFI	GGCC	1 cut(s)	268
BsnI	GGCC	1 cut(s)	268
Bsp1286I	GDGCHC	2 cut(s)	98, 330
Bsp143I	GATC	2 cut(s)	4, 250
Bsp19I	CCATGG	1 cut(s)	322
BspANI	GGCC	1 cut(s)	268
BspMAI	CTGCAG	1 cut(s)	421
BspMI	ACCTGC	1 cut(s)	424
BspPI	GGATC	1 cut(s)	12
BssECI	CCNNGG	1 cut(s)	322
BssMI	GATC	2 cut(s)	4, 250
BssT1I	CCWWGG	1 cut(s)	322
Bst2UI	CCWGG	1 cut(s)	270
BstAPI	GCANNNNNTGC	1 cut(s)	49
BstC8I	GCNNGC	2 cut(s)	50, 223
BstDSI	CCRYGG	1 cut(s)	322
BstEII	GGTNACC	1 cut(s)	317
BstF5I	GGATG	2 cut(s)	223, 253
BstKTI	GATC	2 cut(s)	7, 253
BstMBI	GATC	2 cut(s)	4, 250
BstMWI	GCNNNNNNNGC	1 cut(s)	49
BstNI	CCWGG	1 cut(s)	270
BstNSI	RCATGY	1 cut(s)	52
BstPI	GGTNACC	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	268
BstSFI	CTRYAG	1 cut(s)	417
BstSLI	GKGCMC	1 cut(s)	98
BstV1I	GCAGC	3 cut(s)	39, 129, 180
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	268
BtgI	CCRYGG	1 cut(s)	322
BtgZI	GCGATG	1 cut(s)	304
BtsCI	GGATG	2 cut(s)	223, 253
BtsIMutI	CAGTG	1 cut(s)	88
BveI	ACCTGC	1 cut(s)	424
Cac8I	GCNNGC	2 cut(s)	50, 223
CspCI	CAANNNNNGTGG	2 cut(s)	149, 184
CviAII	CATG	4 cut(s)	44, 49, 121, 323
CviJI	RGCY	7 cut(s)	159, 166, 173, 193, 213, 268, 328
CviKI_1	RGCY	7 cut(s)	159, 166, 173, 193, 213, 268, 328
DpnI	GATC	2 cut(s)	6, 252
DpnII	GATC	2 cut(s)	4, 250
Eco130I	CCWWGG	1 cut(s)	322
Eco147I	AGGCCT	1 cut(s)	268
Eco24I	GRGCYC	1 cut(s)	330
Eco91I	GGTNACC	1 cut(s)	317
EcoO65I	GGTNACC	1 cut(s)	317
EcoRII	CCWGG	1 cut(s)	268
EcoT14I	CCWWGG	1 cut(s)	322
EcoT38I	GRGCYC	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	322
FaeI	CATG	4 cut(s)	47, 52, 124, 326
FaiI	YATR	9 cut(s)	14, 45, 50, 122, 132, 264, 312, 324, 405
FatI	CATG	4 cut(s)	43, 48, 120, 322
Fnu4HI	GCNGC	3 cut(s)	53, 118, 194
FokI	GGATG	2 cut(s)	230, 260
FriOI	GRGCYC	1 cut(s)	330
Fsp4HI	GCNGC	3 cut(s)	53, 118, 194
FspBI	CTAG	2 cut(s)	99, 408
GluI	GCNGC	3 cut(s)	53, 118, 194
GsaI	CCCAGC	1 cut(s)	73
GsuI	CTGGAG	1 cut(s)	291
HaeIII	GGCC	1 cut(s)	268
Hin1II	CATG	4 cut(s)	47, 52, 124, 326
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HphI	GGTGA	2 cut(s)	138, 311
Hpy166II	GTNNAC	2 cut(s)	413, 424
Hpy188III	TCNNGA	1 cut(s)	341
Hpy8I	GTNNAC	2 cut(s)	413, 424
HpyAV	CCTTC	1 cut(s)	10
HpyCH4IV	ACGT	2 cut(s)	89, 367
HpyCH4V	TGCA	2 cut(s)	117, 419
HpyF10VI	GCNNNNNNNGC	1 cut(s)	49
HpySE526I	ACGT	2 cut(s)	89, 367
Hsp92II	CATG	4 cut(s)	47, 52, 124, 326
Kzo9I	GATC	2 cut(s)	4, 250
LpnPI	CCDG	4 cut(s)	55, 255, 282, 354
Lsp1109I	GCAGC	3 cut(s)	39, 129, 180
LweI	GCATC	3 cut(s)	190, 208, 304
MaeI	CTAG	2 cut(s)	99, 408
MaeII	ACGT	2 cut(s)	89, 367
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	2 cut(s)	6, 252
MboI	GATC	2 cut(s)	4, 250
MboII	GAAGA	2 cut(s)	38, 245
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	2 cut(s)	98, 330
MluCI	AATT	2 cut(s)	137, 384
MnlI	CCTC	1 cut(s)	67
MseI	TTAA	2 cut(s)	140, 383
MspR9I	CCNGG	1 cut(s)	270
MvaI	CCWGG	1 cut(s)	270
MwoI	GCNNNNNNNGC	1 cut(s)	49
NcoI	CCATGG	1 cut(s)	322
NdeII	GATC	2 cut(s)	4, 250
NlaIII	CATG	4 cut(s)	47, 52, 124, 326
NmuCI	GTSAC	1 cut(s)	317
NspI	RCATGY	1 cut(s)	52
PaeI	GCATGC	1 cut(s)	52
PceI	AGGCCT	1 cut(s)	268
PkrI	GCNGC	3 cut(s)	54, 119, 195
Psp1406I	AACGTT	2 cut(s)	89, 367
Psp6I	CCWGG	1 cut(s)	268
PspEI	GGTNACC	1 cut(s)	317
PspFI	CCCAGC	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	268
PstI	CTGCAG	1 cut(s)	421
PsuI	RGATCY	1 cut(s)	4
SaqAI	TTAA	2 cut(s)	140, 383
SatI	GCNGC	3 cut(s)	53, 118, 194
Sau3AI	GATC	2 cut(s)	4, 250
ScrFI	CCNGG	1 cut(s)	270
SduI	GDGCHC	2 cut(s)	98, 330
SetI	ASST	7 cut(s)	21, 92, 151, 168, 215, 370, 418
SfaNI	GCATC	3 cut(s)	190, 208, 304
SfcI	CTRYAG	1 cut(s)	417
SmlI	CTYRAG	2 cut(s)	257, 329
SmoI	CTYRAG	2 cut(s)	257, 329
SphI	GCATGC	1 cut(s)	52
Sse9I	AATT	2 cut(s)	137, 384
SseBI	AGGCCT	1 cut(s)	268
SspI	AATATT	1 cut(s)	64
SspMI	CTAG	2 cut(s)	99, 408
StuI	AGGCCT	1 cut(s)	268
StyD4I	CCNGG	1 cut(s)	268
StyI	CCWWGG	1 cut(s)	322
TaiI	ACGT	2 cut(s)	92, 370
TasI	AATT	2 cut(s)	137, 384
Tru1I	TTAA	2 cut(s)	140, 383
Tru9I	TTAA	2 cut(s)	140, 383
TscAI	CASTG	1 cut(s)	88
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	3 cut(s)	52, 117, 193
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	2 cut(s)	29, 137
TspRI	CASTG	1 cut(s)	88
XceI	RCATGY	1 cut(s)	52
XspI	CTAG	2 cut(s)	99, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.