RchiOBHm_Chr7g0227601
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002258
Physical Location & Seq
Forward (+)
50838174 .. 50839335
1162 bp
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UTR
Exon/CDS
Intron
PRQ20386

Sequence Viewer

Length: 999 bp
ATGGAGGCTGTTAATGTAGAAGATGTGAAACAAAGGAAGAAGGCCAACTCTGAGAAACAGGGTAATGCAGAGGATTGCAACAGAAATTTGGAGGGGGTTAATGTAGTAGATAGTGAAAAAAGGAAGAAGGCGACATCAAAGGAACATGTTATTGTGGAGGATTGCAATGAAGAGAAGGAGTCAAGTAAGGGCAACTTAAGAACCCGAAAAAGCACTAGGGCTCGTGATGATTCTGAAAAATTGAGACCTAAGAAAGCATCAAAAAGAGTAAGTTTTGCTGATGATGTGGAGGTCTTCTCACCGTCTGATGACCCAAGTGATGAGCATGAAGACCTGGTAAGAGGTAAACGGTTTTCAGAAGAAGAAAACAAGATTGTGAGACAGGCTGTTTTAAGATACATAGAGGCACATGCTTTAGGGGATGATGGCCTCGACATGGTTTTGCGTTATAAGTCCCACCCTGACGTCAAAAACCACCCAGAATTGAAAAATGGTTGGAAGGATATTGGGGAAGCCTTACCATGGAGGCCCTTTAAGAGTGTAAGAAAGTTCCACAAAGATCGTGGAGCTGATTGGAGAACCTTGGGCGAAAAACTTGGCAAACATAGAATTCATGTCAAGGATGCATGGCGCAGAATAAAACTGCCAAATCAGAAGAAAGGACGTTGGTCCCAAGAGGAGTATGAGGCTTTATTTGATTTAGTGAACAAGGATTTGTGTATGAAGGTTTTTGAAGAAAAGAAAACCAAGCATGGCATGCTGCGAGATAATATTTGCTGGGAGGCAATTAGTGAAACGTTGGGCTCTAGAACCAATGCTGTTTGCAGCATGAAGTGGTATGACCAATTAACATCACCTTTGGTAAACCAAAAGCTGTGGGCTGATATTGATGACTATCGACTTCTTGATGCTCTCAATAGCTTGGATGCTTGCTGTATTGAAGATGTTGATTGGGATGATCTGCTTGAGCATAGGCTGGGAGAAATATGCCAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

332

Amino Acids

38.63

Weight (kDa)

6.81

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 450
AatII GACGTC 1 cut(s) 468
AclI AACGTT 1 cut(s) 797
AcsI RAATTY 2 cut(s) 85, 609
AcyI GRCGYC 1 cut(s) 465
AfiI CCNNNNNNNGG 2 cut(s) 436, 522
AflII CTTAAG 1 cut(s) 196
AflIII ACRYGT 1 cut(s) 145
AgsI TTSAA 3 cut(s) 487, 734, 941
AjnI CCWGG 1 cut(s) 333
AluBI AGCT 3 cut(s) 569, 874, 921
AluI AGCT 3 cut(s) 569, 874, 921
Alw26I GTCTC 2 cut(s) 238, 373
AoxI GGCC 3 cut(s) 42, 427, 527
ApeKI GCWGC 2 cut(s) 760, 825
ApoI RAATTY 2 cut(s) 85, 609
AspLEI GCGC 1 cut(s) 633
AspS9I GGNCC 2 cut(s) 528, 669
AsuHPI GGTGA 2 cut(s) 291, 846
AvaII GGWCC 1 cut(s) 669
BanII GRGCYC 2 cut(s) 223, 806
BauI CACGAG 1 cut(s) 222
BbsI GAAGAC 2 cut(s) 286, 336
BbvI GCAGC 2 cut(s) 747, 837
BccI CCATC 1 cut(s) 419
BciT130I CCWGG 1 cut(s) 335
BcoDI GTCTC 2 cut(s) 238, 373
BfaI CTAG 2 cut(s) 216, 807
BfrI CTTAAG 1 cut(s) 196
BisI GCNGC 2 cut(s) 761, 826
BlsI GCNGC 2 cut(s) 762, 827
Bme1390I CCNGG 1 cut(s) 335
Bme18I GGWCC 1 cut(s) 669
BmgT120I GGNCC 2 cut(s) 528, 669
BmiI GGNNCC 1 cut(s) 671
BmrFI CCNGG 1 cut(s) 335
BmsI GCATC 4 cut(s) 266, 613, 898, 916
BoxI GACNNNNGTC 1 cut(s) 667
BpiI GAAGAC 2 cut(s) 286, 336
BplI GAGNNNNNCTC 2 cut(s) 281, 313
BpuEI CTTGAG 1 cut(s) 986
BsaBI GATNNNNATC 1 cut(s) 894
BsaHI GRCGYC 1 cut(s) 465
BsaI GGTCTC 1 cut(s) 238
BsaJI CCNNGG 2 cut(s) 521, 582
Bsc4I CCNNNNNNNGG 2 cut(s) 436, 522
Bse3DI GCAATG 1 cut(s) 172
Bse8I GATNNNNATC 1 cut(s) 894
BseBI CCWGG 1 cut(s) 335
BseDI CCNNGG 2 cut(s) 521, 582
BseGI GGATG 4 cut(s) 427, 628, 931, 961
BseJI GATNNNNATC 1 cut(s) 894
BseLI CCNNNNNNNGG 2 cut(s) 436, 522
BseMI GCAATG 1 cut(s) 172
BseMII CTCAG 1 cut(s) 42
BseRI GAGGAG 1 cut(s) 692
BseXI GCAGC 2 cut(s) 747, 837
BseYI CCCAGC 2 cut(s) 777, 976
BshFI GGCC 3 cut(s) 44, 429, 529
BslFI GGGAC 2 cut(s) 439, 655
BslI CCNNNNNNNGG 2 cut(s) 436, 522
BsmAI GTCTC 2 cut(s) 238, 373
BsmFI GGGAC 2 cut(s) 439, 655
BsnI GGCC 3 cut(s) 44, 429, 529
Bso31I GGTCTC 1 cut(s) 238
Bsp1286I GDGCHC 2 cut(s) 223, 806
Bsp143I GATC 2 cut(s) 559, 958
Bsp19I CCATGG 1 cut(s) 521
BspANI GGCC 3 cut(s) 44, 429, 529
BspCNI CTCAG 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 671
BspTI CTTAAG 1 cut(s) 196
BspTNI GGTCTC 1 cut(s) 238
BsrDI GCAATG 1 cut(s) 172
BssECI CCNNGG 2 cut(s) 521, 582
BssMI GATC 2 cut(s) 559, 958
BssNI GRCGYC 1 cut(s) 465
BssSI CACGAG 1 cut(s) 222
BssT1I CCWWGG 2 cut(s) 521, 582
Bst2BI CACGAG 1 cut(s) 222
Bst2UI CCWGG 1 cut(s) 335
Bst4CI ACNGT 2 cut(s) 303, 351
Bst6I CTCTTC 1 cut(s) 165
BstACI GRCGYC 1 cut(s) 465
BstAFI CTTAAG 1 cut(s) 196
BstAPI GCANNNNNTGC 1 cut(s) 757
BstC8I GCNNGC 2 cut(s) 758, 931
BstDEI CTNAG 2 cut(s) 51, 249
BstDSI CCRYGG 1 cut(s) 521
BstF5I GGATG 4 cut(s) 427, 628, 931, 961
BstHHI GCGC 1 cut(s) 633
BstKTI GATC 2 cut(s) 562, 961
BstMAI GTCTC 2 cut(s) 238, 373
BstMBI GATC 2 cut(s) 559, 958
BstMWI GCNNNNNNNGC 1 cut(s) 757
BstNI CCWGG 1 cut(s) 335
BstNSI RCATGY 3 cut(s) 149, 413, 760
BstPAI GACNNNNGTC 1 cut(s) 667
BstSCI CCNGG 1 cut(s) 333
BstV1I GCAGC 2 cut(s) 747, 837
BstV2I GAAGAC 2 cut(s) 286, 336
BsuRI GGCC 3 cut(s) 44, 429, 529
BtgI CCRYGG 1 cut(s) 521
BtsCI GGATG 4 cut(s) 427, 628, 931, 961
Cac8I GCNNGC 2 cut(s) 758, 931
CfoI GCGC 1 cut(s) 633
Cfr13I GGNCC 2 cut(s) 528, 669
CsiI ACCWGGT 1 cut(s) 333
CspCI CAANNNNNGTGG 4 cut(s) 544, 579, 857, 892
DdeI CTNAG 2 cut(s) 51, 249
DpnI GATC 2 cut(s) 561, 960
DpnII GATC 2 cut(s) 559, 958
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
Eco130I CCWWGG 2 cut(s) 521, 582
Eco24I GRGCYC 2 cut(s) 223, 806
Eco31I GGTCTC 1 cut(s) 238
Eco47I GGWCC 1 cut(s) 669
EcoO109I RGGNCCY 1 cut(s) 528
EcoRI GAATTC 1 cut(s) 609
EcoRII CCWGG 1 cut(s) 333
EcoT14I CCWWGG 2 cut(s) 521, 582
EcoT22I ATGCAT 1 cut(s) 628
EcoT38I GRGCYC 2 cut(s) 223, 806
ErhI CCWWGG 2 cut(s) 521, 582
FalI AAGNNNNNCTT 2 cut(s) 179, 211
FaqI GGGAC 2 cut(s) 439, 655
Fnu4HI GCNGC 2 cut(s) 761, 826
FokI GGATG 4 cut(s) 434, 635, 938, 968
FriOI GRGCYC 2 cut(s) 223, 806
Fsp4HI GCNGC 2 cut(s) 761, 826
FspBI CTAG 2 cut(s) 216, 807
GlaI GCGC 1 cut(s) 632
GluI GCNGC 2 cut(s) 761, 826
GsaI CCCAGC 2 cut(s) 781, 980
HaeIII GGCC 3 cut(s) 44, 429, 529
HhaI GCGC 1 cut(s) 633
Hin1I GRCGYC 1 cut(s) 465
Hin6I GCGC 1 cut(s) 631
HinP1I GCGC 1 cut(s) 631
HinfI GANTC 2 cut(s) 179, 230
HphI GGTGA 2 cut(s) 291, 846
Hpy166II GTNNAC 3 cut(s) 347, 706, 865
Hpy188I TCNGA 5 cut(s) 52, 235, 307, 358, 654
Hpy188III TCNNGA 3 cut(s) 224, 807, 905
Hpy8I GTNNAC 3 cut(s) 347, 706, 865
HpyAV CCTTC 5 cut(s) 34, 121, 169, 493, 718
HpyCH4III ACNGT 2 cut(s) 303, 351
HpyCH4IV ACGT 3 cut(s) 465, 664, 797
HpyCH4V TGCA 5 cut(s) 68, 78, 165, 626, 825
HpyF10VI GCNNNNNNNGC 1 cut(s) 757
HpyF3I CTNAG 2 cut(s) 51, 249
HpySE526I ACGT 3 cut(s) 465, 664, 797
Hsp92I GRCGYC 1 cut(s) 465
HspAI GCGC 1 cut(s) 631
Kzo9I GATC 2 cut(s) 559, 958
LmnI GCTCC 1 cut(s) 566
LpnPI CCDG 8 cut(s) 44, 320, 347, 368, 474, 492, 763, 962
Lsp1109I GCAGC 2 cut(s) 747, 837
LweI GCATC 4 cut(s) 266, 613, 898, 916
MabI ACCWGGT 1 cut(s) 333
MaeI CTAG 2 cut(s) 216, 807
MaeII ACGT 3 cut(s) 465, 664, 797
MalI GATC 2 cut(s) 561, 960
MboI GATC 2 cut(s) 559, 958
MhlI GDGCHC 2 cut(s) 223, 806
MluCI AATT 6 cut(s) 85, 239, 482, 609, 786, 845
MlyI GAGTC 1 cut(s) 188
MmeI TCCRAC 1 cut(s) 476
Mph1103I ATGCAT 1 cut(s) 628
MseI TTAA 6 cut(s) 12, 99, 197, 392, 534, 848
MspCI CTTAAG 1 cut(s) 196
MspR9I CCNGG 1 cut(s) 335
MvaI CCWGG 1 cut(s) 335
MwoI GCNNNNNNNGC 1 cut(s) 757
NcoI CCATGG 1 cut(s) 521
NdeII GATC 2 cut(s) 559, 958
NlaIV GGNNCC 1 cut(s) 671
NsiI ATGCAT 1 cut(s) 628
NspI RCATGY 3 cut(s) 149, 413, 760
PaeI GCATGC 1 cut(s) 760
PciI ACATGT 1 cut(s) 145
PfeI GAWTC 1 cut(s) 230
PkrI GCNGC 2 cut(s) 762, 827
PleI GAGTC 1 cut(s) 187
PpsI GAGTC 1 cut(s) 187
PscI ACATGT 1 cut(s) 145
PshAI GACNNNNGTC 1 cut(s) 667
PsiI TTATAA 1 cut(s) 450
Psp1406I AACGTT 1 cut(s) 797
Psp6I CCWGG 1 cut(s) 333
PspFI CCCAGC 2 cut(s) 777, 976
PspGI CCWGG 1 cut(s) 333
PspN4I GGNNCC 1 cut(s) 671
PspPI GGNCC 2 cut(s) 528, 669
SaqAI TTAA 6 cut(s) 12, 99, 197, 392, 534, 848
SatI GCNGC 2 cut(s) 761, 826
Sau3AI GATC 2 cut(s) 559, 958
Sau96I GGNCC 2 cut(s) 528, 669
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 335
SduI GDGCHC 2 cut(s) 223, 806
SexAI ACCWGGT 1 cut(s) 333
SfaNI GCATC 4 cut(s) 266, 613, 898, 916
SinI GGWCC 1 cut(s) 669
SmlI CTYRAG 2 cut(s) 196, 965
SmoI CTYRAG 2 cut(s) 196, 965
SphI GCATGC 1 cut(s) 760
Sse9I AATT 6 cut(s) 85, 239, 482, 609, 786, 845
SspI AATATT 1 cut(s) 772
SspMI CTAG 2 cut(s) 216, 807
StyD4I CCNGG 1 cut(s) 333
StyI CCWWGG 2 cut(s) 521, 582
TaaI ACNGT 2 cut(s) 303, 351
TaiI ACGT 3 cut(s) 468, 667, 800
TaqI TCGA 2 cut(s) 432, 898
TasI AATT 6 cut(s) 85, 239, 482, 609, 786, 845
TfiI GAWTC 1 cut(s) 230
Tru1I TTAA 6 cut(s) 12, 99, 197, 392, 534, 848
Tru9I TTAA 6 cut(s) 12, 99, 197, 392, 534, 848
TseI GCWGC 2 cut(s) 760, 825
TspDTI ATGAA 5 cut(s) 183, 342, 602, 737, 845
Vha464I CTTAAG 1 cut(s) 196
VpaK11BI GGWCC 1 cut(s) 669
XapI RAATTY 2 cut(s) 85, 609
XbaI TCTAGA 1 cut(s) 806
XceI RCATGY 3 cut(s) 149, 413, 760
XcmI CCANNNNNNNNNTGG 1 cut(s) 560
XspI CTAG 2 cut(s) 216, 807
ZraI GACGTC 1 cut(s) 466
Zsp2I ATGCAT 1 cut(s) 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.