Rh7DG391500
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002258
Physical Location & Seq
Forward (+)
53587581 .. 53588165
585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG391500.1

Sequence Viewer

Length: 585 bp
ATGGTTGGAAGGATATTGGGGAAGCCTTACCATGGAGGCCCTTTAAGAGTGTATATATATTTTCGAGCCCATATTTTTTTCGAACGAGCAGAGGAACGTACTTGGACCCCAGAAGAGTATGAAGAGGTAAGAAAGTTCCACAAAGATTGTGGAGCTGATTGGAGAACCTTGGGCGAAAAACTTGGCAAACATAGAATTCATGTCAAGGATGCATGTCACAGAATAAAACTGCCAAATCAGAAGAAAGGACGTTGGTCCCAAGAGGAGTATGAGACTTTATTTGATTTAGTGAACAAGGATTTGCGTATGAAAATTTTTGAAGAAAAGAAAACCAAGCATGGCATGCTGCGAGATAATATTTGCTGGGAGGCAATTAGTGAAACGTTGGGCTCTAGAACCAATGCTGTTTGCAGCATGAAGTGGTATGACCAATTAACATCACCTTTGGCAAACCAAAAGCTGTGGGCTGATATTGATGACTGTCGACTTCTTGATGCTCTCAATAGCTTGGATGCTTGCTGTATTGAAGATGTTGATTGGGATGATCTGCTTGAGCATAGGCTGGGAGAAATATGCCAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

194

Amino Acids

23.0

Weight (kDa)

6.45

Isoelectric Point (pI)

42.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_6 PF13921 35 - 93 1.2e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 484
AclI AACGTT 1 cut(s) 383
AcsI RAATTY 2 cut(s) 195, 312
AfaI GTAC 1 cut(s) 100
AfiI CCNNNNNNNGG 1 cut(s) 32
AgsI TTSAA 2 cut(s) 320, 527
AluBI AGCT 3 cut(s) 155, 460, 507
AluI AGCT 3 cut(s) 155, 460, 507
Alw26I GTCTC 1 cut(s) 266
AoxI GGCC 1 cut(s) 37
ApeKI GCWGC 2 cut(s) 346, 411
ApoI RAATTY 2 cut(s) 195, 312
AspS9I GGNCC 3 cut(s) 38, 105, 255
AsuHPI GGTGA 1 cut(s) 432
AsuII TTCGAA 1 cut(s) 81
AvaII GGWCC 2 cut(s) 105, 255
BanII GRGCYC 2 cut(s) 70, 392
BbvI GCAGC 2 cut(s) 333, 423
BcoDI GTCTC 1 cut(s) 266
BfaI CTAG 1 cut(s) 393
BisI GCNGC 2 cut(s) 347, 412
BlsI GCNGC 2 cut(s) 348, 413
Bme18I GGWCC 2 cut(s) 105, 255
BmgT120I GGNCC 3 cut(s) 38, 105, 255
BmiI GGNNCC 2 cut(s) 107, 257
BmsI GCATC 3 cut(s) 199, 484, 502
BoxI GACNNNNGTC 1 cut(s) 253
Bpu14I TTCGAA 1 cut(s) 81
BpuEI CTTGAG 1 cut(s) 572
BsaJI CCNNGG 2 cut(s) 31, 168
Bsc4I CCNNNNNNNGG 1 cut(s) 32
BseDI CCNNGG 2 cut(s) 31, 168
BseGI GGATG 3 cut(s) 214, 517, 547
BseLI CCNNNNNNNGG 1 cut(s) 32
BseRI GAGGAG 1 cut(s) 278
BseXI GCAGC 2 cut(s) 333, 423
BseYI CCCAGC 2 cut(s) 363, 562
BshFI GGCC 1 cut(s) 39
BslFI GGGAC 1 cut(s) 241
BslI CCNNNNNNNGG 1 cut(s) 32
BsmAI GTCTC 1 cut(s) 266
BsmFI GGGAC 1 cut(s) 241
BsnI GGCC 1 cut(s) 39
Bsp119I TTCGAA 1 cut(s) 81
Bsp1286I GDGCHC 2 cut(s) 70, 392
Bsp143I GATC 1 cut(s) 544
Bsp19I CCATGG 1 cut(s) 31
BspANI GGCC 1 cut(s) 39
BspLI GGNNCC 2 cut(s) 107, 257
BspT104I TTCGAA 1 cut(s) 81
BssECI CCNNGG 2 cut(s) 31, 168
BssMI GATC 1 cut(s) 544
BssT1I CCWWGG 2 cut(s) 31, 168
Bst4CI ACNGT 1 cut(s) 482
Bst6I CTCTTC 2 cut(s) 108, 117
BstAPI GCANNNNNTGC 1 cut(s) 343
BstBI TTCGAA 1 cut(s) 81
BstC8I GCNNGC 2 cut(s) 344, 517
BstDSI CCRYGG 1 cut(s) 31
BstF5I GGATG 3 cut(s) 214, 517, 547
BstKTI GATC 1 cut(s) 547
BstMAI GTCTC 1 cut(s) 266
BstMBI GATC 1 cut(s) 544
BstMWI GCNNNNNNNGC 1 cut(s) 343
BstNSI RCATGY 2 cut(s) 216, 346
BstPAI GACNNNNGTC 1 cut(s) 253
BstV1I GCAGC 2 cut(s) 333, 423
BsuRI GGCC 1 cut(s) 39
BtgI CCRYGG 1 cut(s) 31
BtsCI GGATG 3 cut(s) 214, 517, 547
Cac8I GCNNGC 2 cut(s) 344, 517
Cfr13I GGNCC 3 cut(s) 38, 105, 255
Csp6I GTAC 1 cut(s) 99
CspCI CAANNNNNGTGG 6 cut(s) 128, 130, 163, 165, 443, 478
CviAII CATG 6 cut(s) 32, 200, 213, 338, 343, 415
CviJI RGCY 9 cut(s) 25, 39, 68, 155, 390, 460, 467, 507, 562
CviKI_1 RGCY 9 cut(s) 25, 39, 68, 155, 390, 460, 467, 507, 562
CviQI GTAC 1 cut(s) 99
DpnI GATC 1 cut(s) 546
DpnII GATC 1 cut(s) 544
Eam1104I CTCTTC 2 cut(s) 108, 117
EarI CTCTTC 2 cut(s) 108, 117
Eco130I CCWWGG 2 cut(s) 31, 168
Eco24I GRGCYC 2 cut(s) 70, 392
Eco47I GGWCC 2 cut(s) 105, 255
EcoO109I RGGNCCY 1 cut(s) 38
EcoRI GAATTC 1 cut(s) 195
EcoT14I CCWWGG 2 cut(s) 31, 168
EcoT22I ATGCAT 1 cut(s) 214
EcoT38I GRGCYC 2 cut(s) 70, 392
ErhI CCWWGG 2 cut(s) 31, 168
FaeI CATG 6 cut(s) 35, 203, 216, 341, 346, 418
FaqI GGGAC 1 cut(s) 241
FatI CATG 6 cut(s) 31, 199, 212, 337, 342, 414
FblI GTMKAC 1 cut(s) 484
Fnu4HI GCNGC 2 cut(s) 347, 412
FokI GGATG 3 cut(s) 221, 524, 554
FriOI GRGCYC 2 cut(s) 70, 392
Fsp4HI GCNGC 2 cut(s) 347, 412
FspBI CTAG 1 cut(s) 393
GluI GCNGC 2 cut(s) 347, 412
GsaI CCCAGC 2 cut(s) 367, 566
HaeIII GGCC 1 cut(s) 39
Hin1II CATG 6 cut(s) 35, 203, 216, 341, 346, 418
HincII GTYRAC 1 cut(s) 485
HindII GTYRAC 1 cut(s) 485
HphI GGTGA 1 cut(s) 432
Hpy166II GTNNAC 2 cut(s) 292, 485
Hpy188I TCNGA 1 cut(s) 240
Hpy188III TCNNGA 2 cut(s) 393, 491
Hpy8I GTNNAC 2 cut(s) 292, 485
HpyAV CCTTC 1 cut(s) 3
HpyCH4III ACNGT 1 cut(s) 482
HpyCH4IV ACGT 3 cut(s) 97, 250, 383
HpyCH4V TGCA 2 cut(s) 212, 411
HpyF10VI GCNNNNNNNGC 1 cut(s) 343
HpySE526I ACGT 3 cut(s) 97, 250, 383
Hsp92II CATG 6 cut(s) 35, 203, 216, 341, 346, 418
Kzo9I GATC 1 cut(s) 544
LmnI GCTCC 1 cut(s) 152
LpnPI CCDG 3 cut(s) 123, 349, 548
Lsp1109I GCAGC 2 cut(s) 333, 423
LweI GCATC 3 cut(s) 199, 484, 502
MaeI CTAG 1 cut(s) 393
MaeII ACGT 3 cut(s) 97, 250, 383
MaeIII GTNAC 1 cut(s) 215
MalI GATC 1 cut(s) 546
MboI GATC 1 cut(s) 544
MboII GAAGA 5 cut(s) 125, 134, 253, 332, 539
MhlI GDGCHC 2 cut(s) 70, 392
MluCI AATT 4 cut(s) 195, 312, 372, 431
MnlI CCTC 5 cut(s) 29, 85, 118, 256, 361
Mph1103I ATGCAT 1 cut(s) 214
MseI TTAA 2 cut(s) 44, 434
MwoI GCNNNNNNNGC 1 cut(s) 343
NcoI CCATGG 1 cut(s) 31
NdeII GATC 1 cut(s) 544
NlaIII CATG 6 cut(s) 35, 203, 216, 341, 346, 418
NlaIV GGNNCC 2 cut(s) 107, 257
NmuCI GTSAC 1 cut(s) 215
NsiI ATGCAT 1 cut(s) 214
NspI RCATGY 2 cut(s) 216, 346
NspV TTCGAA 1 cut(s) 81
PaeI GCATGC 1 cut(s) 346
PkrI GCNGC 2 cut(s) 348, 413
PshAI GACNNNNGTC 1 cut(s) 253
Psp1406I AACGTT 1 cut(s) 383
PspFI CCCAGC 2 cut(s) 363, 562
PspN4I GGNNCC 2 cut(s) 107, 257
PspPI GGNCC 3 cut(s) 38, 105, 255
RsaI GTAC 1 cut(s) 100
RsaNI GTAC 1 cut(s) 99
SalI GTCGAC 1 cut(s) 483
SaqAI TTAA 2 cut(s) 44, 434
SatI GCNGC 2 cut(s) 347, 412
Sau3AI GATC 1 cut(s) 544
Sau96I GGNCC 3 cut(s) 38, 105, 255
SduI GDGCHC 2 cut(s) 70, 392
SetI ASST 9 cut(s) 100, 129, 157, 170, 253, 386, 445, 462, 509
SfaNI GCATC 3 cut(s) 199, 484, 502
SfuI TTCGAA 1 cut(s) 81
SinI GGWCC 2 cut(s) 105, 255
SmlI CTYRAG 1 cut(s) 551
SmoI CTYRAG 1 cut(s) 551
SphI GCATGC 1 cut(s) 346
Sse9I AATT 4 cut(s) 195, 312, 372, 431
SspI AATATT 1 cut(s) 358
SspMI CTAG 1 cut(s) 393
StyI CCWWGG 2 cut(s) 31, 168
TaaI ACNGT 1 cut(s) 482
TaiI ACGT 3 cut(s) 100, 253, 386
TaqI TCGA 3 cut(s) 64, 81, 484
TasI AATT 4 cut(s) 195, 312, 372, 431
Tru1I TTAA 2 cut(s) 44, 434
Tru9I TTAA 2 cut(s) 44, 434
TseFI GTSAC 1 cut(s) 215
TseI GCWGC 2 cut(s) 346, 411
Tsp45I GTSAC 1 cut(s) 215
TspDTI ATGAA 4 cut(s) 135, 188, 323, 431
VpaK11BI GGWCC 2 cut(s) 105, 255
XapI RAATTY 2 cut(s) 195, 312
XbaI TCTAGA 1 cut(s) 392
XceI RCATGY 2 cut(s) 216, 346
XcmI CCANNNNNNNNNTGG 1 cut(s) 146
XmiI GTMKAC 1 cut(s) 484
XspI CTAG 1 cut(s) 393
Zsp2I ATGCAT 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.