Rroxscaffold_6G00392510
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0002258
Physical Location & Seq
Forward (+)
12116004 .. 12117645
1642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00392510.1

Sequence Viewer

Length: 1431 bp
ATGGAAAGGGAGGAGAGGACAGGTTTGGAGTTTGAAGCAAGGAAAGAGAAGAAGAAGAAGAAAAAGCACAAGGGGAAAGAGAACAAGGATGAACTCGGTGGAGCTTCTTTTATTCAAGTTTGTGGCGATGAAATGAGGAAGGTAGTTGAGGGGGAGAATTGTGACGGTAAGGGTGAGGCTTATATGAACAGCGGAGAAGGAGCCGGTAAGAAAAAGAAAAGGAAAAGGAAGAGGGAGAAGAAGGGGGATGATACTGTGATAAACAATGTGATCGTAGAGGATGGCAATAGAGACGTGGATGCTGTCAATGTAGAAGATGATAAAAAAAGGAACAAAAAGAAGGCCAAATTAGAGAAACATGATAATGTAGAGGACGGCAATAGAGACATGGAAGCTGTCAATGTAGAAGGTGGTAAAGAAAGAAAGAAGAAGAGGGCCAAGTCAGGAAAGCATGTTAATGTAGAGGATGACAATAGAGACGTGGAGGCTGTCAATGTAGAAGACGGAAAACTAACGAAGAATAAGGCAGAATCAGAGAAACTTGTTCTAGAGGATATCAACAGAGACATGGAGATTGTTAATGTGGAAGATGCTAACAGAAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGGCCAAGGCAGAAAAACATGTTCATGTAGAGGATTGCAACAAGAACACAGAGGCTGTTAATATGGAGGCTGTGACTATAGAAGATAGTAAAAAAAGAACGCCAGTGATGCGGATGTCTCACTGTCTGATGGCCCAAGTGATGAGCATCAAGGTCCGAAAAGAGAGCCGAAAAACCTGGTTGGACCCCGAAGAGTACGAAGAGGTGAGAAAGTTCCATAGAGAACATGGAAATGATTGGAGAACTTTGGGTGCTAAACTTGGCAAACATAGAATTCATGTCAAGGATGCATGGCGTCGATTAAAACTGCCAAATCATAGGAAAGGACCTTGGTCCCAAGAGGAGTATCAGACTTTATTTGATTTAGTGAATAAGGATCTGCTTATGAGGGCCTTAGAAAAAAAGAAGACCAAGCATGGCATGCTGCGAGATAATATTTGCTGGGAAGCAATTAGCGACAAGTTGGGTACTAGAACGAATGCAGTTTGCAGCATGAAGTGGTATAAGCAACTTGCATCACCTTTGGTAAAGCAAAAGCTTTGGGCTGATATTGATGACTATAGGCTGCTCGATGCTCTCACTAAGTTGGAGGCTAGCTCTATTGAAGATGTAGATTGGGATGATCTGCTTGAGCATAGGCCTGGAGATGTATGCAGATGGCGATGGGATCAAATGGTTAAACACATTGGTGAACATGCACTCGAGTCATTTCCTGAACAAGTGGCAGTTTTATCTAACCGGTATCCTGCTGAGTTAATTGAAGCGATCGAAACCTATGATAGTAAACCGGTAGTTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

476

Amino Acids

55.41

Weight (kDa)

9.15

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_6 PF13921 273 - 329 9.2e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 192, 742
AclWI GGATC 2 cut(s) 1014, 1305
AcsI RAATTY 1 cut(s) 903
AcyI GRCGYC 1 cut(s) 925
AfaI GTAC 2 cut(s) 827, 1099
AflIII ACRYGT 1 cut(s) 649
AgeI ACCGGT 2 cut(s) 1368, 1417
AgsI TTSAA 4 cut(s) 35, 116, 1235, 1391
AjiI CACGTC 2 cut(s) 295, 481
AjnI CCWGG 2 cut(s) 806, 1270
AleI CACNNNNGTG 1 cut(s) 1317
AluBI AGCT 4 cut(s) 104, 395, 1168, 1227
AluI AGCT 4 cut(s) 104, 395, 1168, 1227
Alw26I GTCTC 5 cut(s) 285, 378, 471, 558, 753
AlwI GGATC 2 cut(s) 1014, 1305
AlwNI CAGNNNCTG 1 cut(s) 686
Ama87I CYCGRG 1 cut(s) 1331
AoxI GGCC 6 cut(s) 342, 435, 633, 762, 1020, 1268
ApeKI GCWGC 3 cut(s) 1054, 1119, 1195
ApoI RAATTY 1 cut(s) 903
AsiGI ACCGGT 2 cut(s) 1368, 1417
AspS9I GGNCC 7 cut(s) 435, 763, 784, 814, 956, 963, 1020
AsuHPI GGTGA 4 cut(s) 185, 847, 1140, 1331
AsuNHI GCTAGC 1 cut(s) 1223
AvaI CYCGRG 1 cut(s) 1331
AvaII GGWCC 4 cut(s) 784, 814, 956, 963
BbsI GAAGAC 2 cut(s) 507, 1043
BbvI GCAGC 3 cut(s) 1041, 1131, 1182
BccI CCATC 4 cut(s) 275, 754, 1281, 1287
BceAI ACGGC 1 cut(s) 391
BciT130I CCWGG 2 cut(s) 808, 1272
BciVI GTATCC 1 cut(s) 1383
BcoDI GTCTC 5 cut(s) 285, 378, 471, 558, 753
BfaI CTAG 3 cut(s) 548, 1101, 1224
BfmI CTRYAG 2 cut(s) 708, 1189
BfuI GTATCC 1 cut(s) 1383
BisI GCNGC 3 cut(s) 1055, 1120, 1196
BlsI GCNGC 3 cut(s) 1056, 1121, 1197
Bme1390I CCNGG 2 cut(s) 808, 1272
Bme18I GGWCC 4 cut(s) 784, 814, 956, 963
BmeT110I CYCGRG 1 cut(s) 1331
BmgBI CACGTC 2 cut(s) 295, 481
BmgT120I GGNCC 7 cut(s) 435, 763, 784, 814, 956, 963, 1020
BmiI GGNNCC 3 cut(s) 202, 816, 965
BmrFI CCNGG 2 cut(s) 808, 1272
BmsI GCATC 7 cut(s) 289, 580, 729, 786, 907, 1154, 1192
BmtI GCTAGC 1 cut(s) 1227
BoxI GACNNNNGTC 1 cut(s) 961
BpiI GAAGAC 2 cut(s) 507, 1043
BplI GAGNNNNNCTC 2 cut(s) 1211, 1243
BpmI CTGGAG 1 cut(s) 1293
BpuEI CTTGAG 1 cut(s) 1280
BsaBI GATNNNNATC 1 cut(s) 776
BsaHI GRCGYC 1 cut(s) 925
BsaJI CCNNGG 2 cut(s) 636, 959
BsaWI WCCGGW 2 cut(s) 1368, 1417
Bse118I RCCGGY 3 cut(s) 203, 1368, 1417
Bse1I ACTGG 1 cut(s) 734
Bse8I GATNNNNATC 1 cut(s) 776
BseBI CCWGG 2 cut(s) 808, 1272
BseDI CCNNGG 2 cut(s) 636, 959
BseGI GGATG 8 cut(s) 94, 253, 286, 304, 472, 750, 922, 1255
BseJI GATNNNNATC 1 cut(s) 776
BseMII CTCAG 1 cut(s) 1371
BseNI ACTGG 1 cut(s) 734
BseRI GAGGAG 2 cut(s) 26, 986
BseXI GCAGC 3 cut(s) 1041, 1131, 1182
BseYI CCCAGC 1 cut(s) 1071
Bsh1285I CGRYCG 1 cut(s) 1398
BshFI GGCC 6 cut(s) 344, 437, 635, 764, 1022, 1270
BshTI ACCGGT 2 cut(s) 1368, 1417
BsiEI CGRYCG 1 cut(s) 1398
BsiHKCI CYCGRG 1 cut(s) 1331
BsiSI CCGG 3 cut(s) 204, 1369, 1418
BslFI GGGAC 1 cut(s) 949
BsmAI GTCTC 5 cut(s) 285, 378, 471, 558, 753
BsmBI CGTCTC 2 cut(s) 285, 471
BsmFI GGGAC 1 cut(s) 949
BsmI GAATGC 1 cut(s) 1114
BsnI GGCC 6 cut(s) 344, 437, 635, 764, 1022, 1270
BsoBI CYCGRG 1 cut(s) 1331
Bsp143I GATC 5 cut(s) 270, 1006, 1252, 1297, 1395
BspACI CCGC 2 cut(s) 192, 742
BspANI GGCC 6 cut(s) 344, 437, 635, 764, 1022, 1270
BspCNI CTCAG 1 cut(s) 1372
BspLI GGNNCC 3 cut(s) 202, 816, 965
BspOI GCTAGC 1 cut(s) 1227
BspPI GGATC 2 cut(s) 1014, 1305
BsrFI RCCGGY 3 cut(s) 203, 1368, 1417
BsrI ACTGG 1 cut(s) 734
BssAI RCCGGY 3 cut(s) 203, 1368, 1417
BssECI CCNNGG 2 cut(s) 636, 959
BssMI GATC 5 cut(s) 270, 1006, 1252, 1297, 1395
BssNI GRCGYC 1 cut(s) 925
BssT1I CCWWGG 2 cut(s) 636, 959
Bst2UI CCWGG 2 cut(s) 808, 1272
Bst4CI ACNGT 3 cut(s) 167, 256, 755
Bst6I CTCTTC 4 cut(s) 224, 425, 816, 825
BstACI GRCGYC 1 cut(s) 925
BstAPI GCANNNNNTGC 1 cut(s) 1051
BstC8I GCNNGC 2 cut(s) 1052, 1225
BstDEI CTNAG 3 cut(s) 1024, 1212, 1380
BstF5I GGATG 8 cut(s) 94, 253, 286, 304, 472, 750, 922, 1255
BstKTI GATC 5 cut(s) 273, 1009, 1255, 1300, 1398
BstMAI GTCTC 5 cut(s) 285, 378, 471, 558, 753
BstMBI GATC 5 cut(s) 270, 1006, 1252, 1297, 1395
BstMCI CGRYCG 1 cut(s) 1398
BstMWI GCNNNNNNNGC 2 cut(s) 739, 1051
BstNI CCWGG 2 cut(s) 808, 1272
BstNSI RCATGY 4 cut(s) 455, 653, 1054, 1328
BstPAI GACNNNNGTC 1 cut(s) 961
BstSCI CCNGG 2 cut(s) 806, 1270
BstSFI CTRYAG 2 cut(s) 708, 1189
BstV1I GCAGC 3 cut(s) 1041, 1131, 1182
BstV2I GAAGAC 2 cut(s) 507, 1043
BstX2I RGATCY 1 cut(s) 1006
BstYI RGATCY 1 cut(s) 1006
BsuI GTATCC 1 cut(s) 1383
BsuRI GGCC 6 cut(s) 344, 437, 635, 764, 1022, 1270
BtgZI GCGATG 2 cut(s) 141, 1306
BtrI CACGTC 2 cut(s) 295, 481
BtsCI GGATG 8 cut(s) 94, 253, 286, 304, 472, 750, 922, 1255
BtsIMutI CAGTG 2 cut(s) 741, 751
Cac8I GCNNGC 2 cut(s) 1052, 1225
CaiI CAGNNNCTG 1 cut(s) 686
Cfr10I RCCGGY 3 cut(s) 203, 1368, 1417
Cfr13I GGNCC 7 cut(s) 435, 763, 784, 814, 956, 963, 1020
CseI GACGC 1 cut(s) 914
CsiI ACCWGGT 1 cut(s) 806
Csp6I GTAC 2 cut(s) 826, 1098
CspAI ACCGGT 2 cut(s) 1368, 1417
CviQI GTAC 2 cut(s) 826, 1098
DdeI CTNAG 3 cut(s) 1024, 1212, 1380
DpnI GATC 5 cut(s) 272, 1008, 1254, 1299, 1397
DpnII GATC 5 cut(s) 270, 1006, 1252, 1297, 1395
Eam1104I CTCTTC 4 cut(s) 224, 425, 816, 825
EarI CTCTTC 4 cut(s) 224, 425, 816, 825
Eco130I CCWWGG 2 cut(s) 636, 959
Eco147I AGGCCT 1 cut(s) 1270
Eco32I GATATC 1 cut(s) 556
Eco47I GGWCC 4 cut(s) 784, 814, 956, 963
Eco88I CYCGRG 1 cut(s) 1331
EcoO109I RGGNCCY 2 cut(s) 956, 1020
EcoRI GAATTC 1 cut(s) 903
EcoRII CCWGG 2 cut(s) 806, 1270
EcoRV GATATC 1 cut(s) 556
EcoT14I CCWWGG 2 cut(s) 636, 959
EcoT22I ATGCAT 1 cut(s) 922
ErhI CCWWGG 2 cut(s) 636, 959
Esp3I CGTCTC 2 cut(s) 285, 471
FaqI GGGAC 1 cut(s) 949
Fnu4HI GCNGC 3 cut(s) 1055, 1120, 1196
FokI GGATG 8 cut(s) 101, 260, 293, 311, 479, 757, 929, 1262
Fsp4HI GCNGC 3 cut(s) 1055, 1120, 1196
FspBI CTAG 3 cut(s) 548, 1101, 1224
GluI GCNGC 3 cut(s) 1055, 1120, 1196
GsaI CCCAGC 1 cut(s) 1075
GsuI CTGGAG 1 cut(s) 1293
HaeIII GGCC 6 cut(s) 344, 437, 635, 764, 1022, 1270
HapII CCGG 3 cut(s) 204, 1369, 1418
HgaI GACGC 1 cut(s) 914
Hin1I GRCGYC 1 cut(s) 925
HincII GTYRAC 1 cut(s) 1426
HindII GTYRAC 1 cut(s) 1426
HindIII AAGCTT 1 cut(s) 1166
HinfI GANTC 2 cut(s) 530, 1334
HpaII CCGG 3 cut(s) 204, 1369, 1418
HphI GGTGA 4 cut(s) 185, 847, 1140, 1331
Hpy166II GTNNAC 3 cut(s) 1322, 1415, 1426
Hpy188I TCNGA 4 cut(s) 535, 759, 788, 981
Hpy188III TCNNGA 3 cut(s) 444, 548, 1343
Hpy8I GTNNAC 3 cut(s) 1322, 1415, 1426
Hpy99I CGWCG 1 cut(s) 930
HpyAV CCTTC 7 cut(s) 133, 191, 235, 334, 401, 594, 625
HpyCH4III ACNGT 3 cut(s) 167, 256, 755
HpyCH4IV ACGT 2 cut(s) 294, 480
HpyCH4V TGCA 7 cut(s) 669, 920, 1112, 1119, 1145, 1284, 1328
HpyF10VI GCNNNNNNNGC 2 cut(s) 739, 1051
HpyF3I CTNAG 3 cut(s) 1024, 1212, 1380
HpySE526I ACGT 2 cut(s) 294, 480
Hsp92I GRCGYC 1 cut(s) 925
Kzo9I GATC 5 cut(s) 270, 1006, 1252, 1297, 1395
LmnI GCTCC 2 cut(s) 101, 200
Lsp1109I GCAGC 3 cut(s) 1041, 1131, 1182
LweI GCATC 7 cut(s) 289, 580, 729, 786, 907, 1154, 1192
MabI ACCWGGT 1 cut(s) 806
MaeI CTAG 3 cut(s) 548, 1101, 1224
MaeII ACGT 2 cut(s) 294, 480
MaeIII GTNAC 2 cut(s) 161, 703
MalI GATC 5 cut(s) 272, 1008, 1254, 1299, 1397
MboI GATC 5 cut(s) 270, 1006, 1252, 1297, 1395
MflI RGATCY 1 cut(s) 1006
MluCI AATT 5 cut(s) 157, 347, 903, 1080, 1386
MlyI GAGTC 1 cut(s) 1343
MmeI TCCRAC 2 cut(s) 792, 1197
Mph1103I ATGCAT 1 cut(s) 922
MseI TTAA 6 cut(s) 456, 579, 690, 932, 1308, 1385
MslI CAYNNNNRTG 5 cut(s) 363, 456, 654, 861, 1317
MspA1I CMGCKG 1 cut(s) 192
MspI CCGG 3 cut(s) 204, 1369, 1418
MspR9I CCNGG 2 cut(s) 808, 1272
Mva1269I GAATGC 1 cut(s) 1114
MvaI CCWGG 2 cut(s) 808, 1272
MwoI GCNNNNNNNGC 2 cut(s) 739, 1051
NdeII GATC 5 cut(s) 270, 1006, 1252, 1297, 1395
NheI GCTAGC 1 cut(s) 1223
NlaIV GGNNCC 3 cut(s) 202, 816, 965
NmuCI GTSAC 2 cut(s) 161, 703
NsiI ATGCAT 1 cut(s) 922
NspI RCATGY 4 cut(s) 455, 653, 1054, 1328
OliI CACNNNNGTG 1 cut(s) 1317
PaeI GCATGC 1 cut(s) 1054
PaeR7I CTCGAG 1 cut(s) 1331
PceI AGGCCT 1 cut(s) 1270
PciI ACATGT 1 cut(s) 649
PctI GAATGC 1 cut(s) 1114
PfeI GAWTC 1 cut(s) 530
PinAI ACCGGT 2 cut(s) 1368, 1417
PkrI GCNGC 3 cut(s) 1056, 1121, 1197
Ple19I CGATCG 1 cut(s) 1398
PleI GAGTC 1 cut(s) 1342
PpsI GAGTC 1 cut(s) 1342
PpuMI RGGWCCY 1 cut(s) 956
PscI ACATGT 1 cut(s) 649
PshAI GACNNNNGTC 1 cut(s) 961
Psp5II RGGWCCY 1 cut(s) 956
Psp6I CCWGG 2 cut(s) 806, 1270
PspFI CCCAGC 1 cut(s) 1071
PspGI CCWGG 2 cut(s) 806, 1270
PspN4I GGNNCC 3 cut(s) 202, 816, 965
PspPI GGNCC 7 cut(s) 435, 763, 784, 814, 956, 963, 1020
PspPPI RGGWCCY 1 cut(s) 956
PspXI VCTCGAGB 1 cut(s) 1331
PstNI CAGNNNCTG 1 cut(s) 686
PsuI RGATCY 1 cut(s) 1006
PvuI CGATCG 1 cut(s) 1398
RsaI GTAC 2 cut(s) 827, 1099
RsaNI GTAC 2 cut(s) 826, 1098
RseI CAYNNNNRTG 5 cut(s) 363, 456, 654, 861, 1317
SaqAI TTAA 6 cut(s) 456, 579, 690, 932, 1308, 1385
SatI GCNGC 3 cut(s) 1055, 1120, 1196
Sau3AI GATC 5 cut(s) 270, 1006, 1252, 1297, 1395
Sau96I GGNCC 7 cut(s) 435, 763, 784, 814, 956, 963, 1020
SchI GAGTC 1 cut(s) 1343
ScrFI CCNGG 2 cut(s) 808, 1272
SexAI ACCWGGT 1 cut(s) 806
SfaNI GCATC 7 cut(s) 289, 580, 729, 786, 907, 1154, 1192
SfcI CTRYAG 2 cut(s) 708, 1189
Sfr274I CTCGAG 1 cut(s) 1331
SinI GGWCC 4 cut(s) 784, 814, 956, 963
SlaI CTCGAG 1 cut(s) 1331
SmiMI CAYNNNNRTG 5 cut(s) 363, 456, 654, 861, 1317
SmlI CTYRAG 2 cut(s) 1259, 1331
SmoI CTYRAG 2 cut(s) 1259, 1331
SphI GCATGC 1 cut(s) 1054
Sse9I AATT 5 cut(s) 157, 347, 903, 1080, 1386
SseBI AGGCCT 1 cut(s) 1270
SsiI CCGC 2 cut(s) 192, 742
SspI AATATT 1 cut(s) 1066
SspMI CTAG 3 cut(s) 548, 1101, 1224
StuI AGGCCT 1 cut(s) 1270
StyD4I CCNGG 2 cut(s) 806, 1270
StyI CCWWGG 2 cut(s) 636, 959
TaaI ACNGT 3 cut(s) 167, 256, 755
TaiI ACGT 2 cut(s) 297, 483
TaqI TCGA 4 cut(s) 928, 1200, 1332, 1398
TasI AATT 5 cut(s) 157, 347, 903, 1080, 1386
TfiI GAWTC 1 cut(s) 530
Tru1I TTAA 6 cut(s) 456, 579, 690, 932, 1308, 1385
Tru9I TTAA 6 cut(s) 456, 579, 690, 932, 1308, 1385
TscAI CASTG 2 cut(s) 741, 758
TseFI GTSAC 2 cut(s) 161, 703
TseI GCWGC 3 cut(s) 1054, 1119, 1195
Tsp45I GTSAC 2 cut(s) 161, 703
TspDTI ATGAA 6 cut(s) 105, 144, 200, 644, 896, 1139
TspGWI ACGGA 1 cut(s) 519
TspRI CASTG 2 cut(s) 741, 758
VpaK11BI GGWCC 4 cut(s) 784, 814, 956, 963
XapI RAATTY 1 cut(s) 903
XbaI TCTAGA 1 cut(s) 547
XceI RCATGY 4 cut(s) 455, 653, 1054, 1328
XcmI CCANNNNNNNNNTGG 1 cut(s) 854
XhoI CTCGAG 1 cut(s) 1331
XspI CTAG 3 cut(s) 548, 1101, 1224
Zsp2I ATGCAT 1 cut(s) 922
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.