RLG00000035196
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002258
Physical Location & Seq
Forward (+)
62683822 .. 62688032
4211 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035196

Sequence Viewer

Length: 1908 bp
ATGGGAAGGAAGGAGAGGACACCTTTGGAGTTTGAATCAGGAAAAGAGAAGAAAAAGCACAAGGAGAAAAGGAAGGAGAAAGCGAAGAAGGATGAACTTGAAAGAAATTCTTCCGTGCTTGAAGTCTGTGGGGACAAAATGGGCAAGGAAGTTGAGGGGCTGAAATATGACGAGACTGGTGGAAATCATATGAATAGTGGAGAAGAAGCCAATAAGAAAAAGAAAAGGAGGAGGGAAAAGGAGGGGGATGATATGGTAATAGATATGATTAATAAAAAGGAGCTCATAAATGATGGGGAGAAATCCGTTGGGAAAACTGTGGAGAAAGTTGACTCTACGGGTAGCGTAAAGAAGACACAAAAAATTCTTGAGGATGGAAAAGTAGGTGTGGCAACTGAGTATGGAGATGTTGCACAAATAAACAACAAGGGACGAAATAAAAAGAAAAAAGAGAAGAAACGGAAGAGGGAAAAAGCGGGTGGTGAATTGGTACATAATATCACAAGTGATGGAATGGAGGCTGGAGTAGCAAGTAAGCGTTTAGATGGGCATATTGTGTCTGAAAATATGGGCACTGGGAGCAGTGAATCGTGCATCAGAAACATAAAGGCTGTTGATGTAGATGGTGGGAAAACAAGGAAGAAGAAGGCCAAGGCAGATACCCTTGTTAATGGAGAAGTTAGCAGCAGAAATGTGGAGGTTGTTAATGTAGAAGATGGTAAAAAAAGAAAGAAGGCCAAGTCAGAGAAACATGTTGTAGAAGATTGCAACAGAAAATCAGAGGCTGTTAATGTAGGAAATAGTAAGAAAAGGAAGAAGTCCAAGTCAGAGAAACGTGGTATTGCGGAGGTTTGCAATGAAGACAAGAAAAAGGCCAGGTCAAGTAAAGGCAGCTTAATAGCCCAAAAAAGCATTGGAGCTCCTGACAATTCTGAAAAATCAACCCCTAAAAAAGCATCAAAAAGAGTAAGTTTTGCTGATGATGTGGAGGTCTTCTCACTGTCTGATGGCCCAAATGATGAGCATGAAGACCTTGTAAGAGGTAAACGGTTTTCAGAAGAAGAAGACAAGATTGTGAAAGAGGCTGTTTTAAGATACATAGAGGAACATGCTTTAGGGGATGATGGCCTCAACATGGTTCTGCGTTGTAAGTCCCACCCTGAAGTCAAAAACCACCCAGAATTGAAAAATTGTTGGAAGGATATTGGGGCAGCCTTACCATGGAGGCCCTTTAAGAGCGTATATTATAGAGCCCATATTTTGTTTGAACGAGCCGAGAAACGTATTTGGACCCTGGAAGAGTACGAAGAGGTAAAGAAGTTCCATAAAGATCGGGGAGCTGATTGGAGAACTTTGGGCGATAAGCTTGGCAAACATAGAATTCATGTCAAGGATGCATGGCGCAGAATAAAGCTGCCAAATCAGAAGAAAGGACGCTGGTCCCAAGAGGAGTATGAGACTTTATTTGATTTAGTGAACATGGACCTGCGTATGAAGGTTTTTGAAGAAAAGAAAACCAAGCATGGCATGCTGCGAGATAATATTTGCTGGGAGGCAATCAGTGAAACATTGGGCACTAGAACGAATGCTGTTTGCAGCATGAAGTGGTATAACCAATTAACATCACCTTTGGTAAGCCAAAAGCTGTGGGCTGACATTGACGACTATCGACTGCTTGATGCTCTCAATAGCTTGGATGCTTGCTGTATTGAAGATGTTGATTGGGATGATCTGCTTGAGCATAGGCCTGGAGATGTTTGCCAAAAGCGATGGCATCAAATGGTCAAACATATTGGTCATCATGGGCTCAAGTCCTTTCCTGAACAAGTGGAAGTTTTATCTAAACGTTATCTTGCCGATTTAATTGAAGCAAGAGAAATCTATGCTAGTAAACCTGCAGTTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

636

Amino Acids

72.51

Weight (kDa)

9.22

Isoelectric Point (pI)

41.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_6 PF13921 430 - 488 1.2e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1494, 1903
AciI CCGC 2 cut(s) 476, 845
AclI AACGTT 1 cut(s) 1846
AcsI RAATTY 3 cut(s) 106, 363, 1380
AcuI CTGAAG 1 cut(s) 1182
AfaI GTAC 2 cut(s) 492, 1304
AfiI CCNNNNNNNGG 2 cut(s) 1135, 1221
AflIII ACRYGT 1 cut(s) 751
AgsI TTSAA 8 cut(s) 35, 101, 122, 1186, 1268, 1505, 1712, 1868
AjnI CCWGG 3 cut(s) 875, 1293, 1747
AluBI AGCT 8 cut(s) 283, 894, 920, 1340, 1366, 1414, 1645, 1692
AluI AGCT 8 cut(s) 283, 894, 920, 1340, 1366, 1414, 1645, 1692
Alw21I GWGCWC 2 cut(s) 285, 922
Alw26I GTCTC 2 cut(s) 167, 1451
AlwNI CAGNNNCTG 1 cut(s) 785
AoxI GGCC 7 cut(s) 648, 735, 873, 1009, 1126, 1226, 1745
ApeKI GCWGC 6 cut(s) 684, 891, 1211, 1414, 1531, 1596
ApoI RAATTY 3 cut(s) 106, 363, 1380
AseI ATTAAT 1 cut(s) 270
Asp700I GAANNNNTTC 1 cut(s) 109
AspLEI GCGC 1 cut(s) 1404
AspS9I GGNCC 5 cut(s) 1010, 1227, 1290, 1440, 1483
AsuHPI GGTGA 2 cut(s) 494, 1617
AvaII GGWCC 3 cut(s) 1290, 1440, 1483
BaeGI GKGCMC 2 cut(s) 575, 1577
BaeI ACNNNNGTAYC 2 cut(s) 651, 684
BanII GRGCYC 4 cut(s) 285, 922, 1255, 1809
BbsI GAAGAC 5 cut(s) 359, 867, 985, 1035, 1071
Bbv12I GWGCWC 2 cut(s) 285, 922
BbvI GCAGC 6 cut(s) 696, 903, 1223, 1401, 1518, 1608
BccI CCATC 9 cut(s) 287, 368, 503, 539, 617, 710, 1001, 1118, 1764
BciT130I CCWGG 3 cut(s) 877, 1295, 1749
BcoDI GTCTC 2 cut(s) 167, 1451
BfaI CTAG 2 cut(s) 1578, 1887
BfmI CTRYAG 1 cut(s) 1896
BfuAI ACCTGC 2 cut(s) 1494, 1903
BisI GCNGC 6 cut(s) 685, 892, 1212, 1415, 1532, 1597
BlsI GCNGC 6 cut(s) 686, 893, 1213, 1416, 1533, 1598
Bme1390I CCNGG 3 cut(s) 877, 1295, 1749
Bme18I GGWCC 3 cut(s) 1290, 1440, 1483
BmgT120I GGNCC 5 cut(s) 1010, 1227, 1290, 1440, 1483
BmiI GGNNCC 2 cut(s) 1292, 1442
BmrFI CCNGG 3 cut(s) 877, 1295, 1749
BmrI ACTGGG 1 cut(s) 585
BmsI GCATC 6 cut(s) 603, 965, 1384, 1669, 1687, 1783
BmuI ACTGGG 1 cut(s) 585
BoxI GACNNNNGTC 1 cut(s) 1438
BpiI GAAGAC 5 cut(s) 359, 867, 985, 1035, 1071
BplI GAGNNNNNCTC 2 cut(s) 980, 1012
BpmI CTGGAG 2 cut(s) 543, 1770
BpuEI CTTGAG 3 cut(s) 389, 1757, 1793
BsaJI CCNNGG 3 cut(s) 651, 1220, 1293
Bsc4I CCNNNNNNNGG 2 cut(s) 1135, 1221
Bse1I ACTGG 2 cut(s) 181, 580
Bse3DI GCAATG 1 cut(s) 862
BseBI CCWGG 3 cut(s) 877, 1295, 1749
BseDI CCNNGG 3 cut(s) 651, 1220, 1293
BseGI GGATG 7 cut(s) 97, 253, 379, 1126, 1399, 1702, 1732
BseLI CCNNNNNNNGG 2 cut(s) 1135, 1221
BseMI GCAATG 1 cut(s) 862
BseMII CTCAG 1 cut(s) 387
BseNI ACTGG 2 cut(s) 181, 580
BseRI GAGGAG 2 cut(s) 244, 1463
BseSI GKGCMC 2 cut(s) 575, 1577
BseXI GCAGC 6 cut(s) 696, 903, 1223, 1401, 1518, 1608
BseYI CCCAGC 1 cut(s) 1548
BshFI GGCC 7 cut(s) 650, 737, 875, 1011, 1128, 1228, 1747
BsiHKAI GWGCWC 2 cut(s) 285, 922
BslFI GGGAC 4 cut(s) 146, 444, 1138, 1426
BslI CCNNNNNNNGG 2 cut(s) 1135, 1221
BsmAI GTCTC 2 cut(s) 167, 1451
BsmFI GGGAC 4 cut(s) 146, 444, 1138, 1426
BsmI GAATGC 1 cut(s) 1591
BsnI GGCC 7 cut(s) 650, 737, 875, 1011, 1128, 1228, 1747
Bsp1286I GDGCHC 6 cut(s) 285, 575, 922, 1255, 1577, 1809
Bsp143I GATC 2 cut(s) 1330, 1729
Bsp19I CCATGG 1 cut(s) 1220
BspACI CCGC 2 cut(s) 476, 845
BspANI GGCC 7 cut(s) 650, 737, 875, 1011, 1128, 1228, 1747
BspCNI CTCAG 1 cut(s) 388
BspLI GGNNCC 2 cut(s) 1292, 1442
BspMAI CTGCAG 1 cut(s) 1900
BspMI ACCTGC 2 cut(s) 1494, 1903
BsrDI GCAATG 1 cut(s) 862
BsrI ACTGG 2 cut(s) 181, 580
BssECI CCNNGG 3 cut(s) 651, 1220, 1293
BssMI GATC 2 cut(s) 1330, 1729
BssT1I CCWWGG 2 cut(s) 651, 1220
Bst2UI CCWGG 3 cut(s) 877, 1295, 1749
Bst4CI ACNGT 3 cut(s) 319, 1002, 1050
Bst6I CTCTTC 3 cut(s) 458, 1293, 1302
BstAPI GCANNNNNTGC 1 cut(s) 1528
BstC8I GCNNGC 2 cut(s) 1529, 1702
BstDEI CTNAG 1 cut(s) 396
BstDSI CCRYGG 1 cut(s) 1220
BstF5I GGATG 7 cut(s) 97, 253, 379, 1126, 1399, 1702, 1732
BstHHI GCGC 1 cut(s) 1404
BstKTI GATC 2 cut(s) 1333, 1732
BstMAI GTCTC 2 cut(s) 167, 1451
BstMBI GATC 2 cut(s) 1330, 1729
BstMWI GCNNNNNNNGC 3 cut(s) 527, 579, 1528
BstNI CCWGG 3 cut(s) 877, 1295, 1749
BstNSI RCATGY 3 cut(s) 755, 1112, 1531
BstPAI GACNNNNGTC 1 cut(s) 1438
BstSCI CCNGG 3 cut(s) 875, 1293, 1747
BstSFI CTRYAG 1 cut(s) 1896
BstSLI GKGCMC 2 cut(s) 575, 1577
BstV1I GCAGC 6 cut(s) 696, 903, 1223, 1401, 1518, 1608
BstV2I GAAGAC 5 cut(s) 359, 867, 985, 1035, 1071
BsuRI GGCC 7 cut(s) 650, 737, 875, 1011, 1128, 1228, 1747
BtgI CCRYGG 1 cut(s) 1220
BtgZI GCGATG 1 cut(s) 1783
BtsCI GGATG 7 cut(s) 97, 253, 379, 1126, 1399, 1702, 1732
BtsI GCAGTG 1 cut(s) 589
BtsIMutI CAGTG 4 cut(s) 573, 589, 998, 1567
BveI ACCTGC 2 cut(s) 1494, 1903
Cac8I GCNNGC 2 cut(s) 1529, 1702
CaiI CAGNNNCTG 1 cut(s) 785
CfoI GCGC 1 cut(s) 1404
Cfr13I GGNCC 5 cut(s) 1010, 1227, 1290, 1440, 1483
CseI GACGC 1 cut(s) 1443
Csp6I GTAC 2 cut(s) 491, 1303
CspCI CAANNNNNGTGG 2 cut(s) 1628, 1663
CviQI GTAC 2 cut(s) 491, 1303
DdeI CTNAG 1 cut(s) 396
DpnI GATC 2 cut(s) 1332, 1731
DpnII GATC 2 cut(s) 1330, 1729
Eam1104I CTCTTC 3 cut(s) 458, 1293, 1302
EarI CTCTTC 3 cut(s) 458, 1293, 1302
Ecl136II GAGCTC 2 cut(s) 283, 920
Eco130I CCWWGG 2 cut(s) 651, 1220
Eco147I AGGCCT 1 cut(s) 1747
Eco24I GRGCYC 4 cut(s) 285, 922, 1255, 1809
Eco47I GGWCC 3 cut(s) 1290, 1440, 1483
Eco53kI GAGCTC 2 cut(s) 283, 920
Eco57I CTGAAG 1 cut(s) 1182
EcoICRI GAGCTC 2 cut(s) 283, 920
EcoO109I RGGNCCY 1 cut(s) 1227
EcoRI GAATTC 1 cut(s) 1380
EcoRII CCWGG 3 cut(s) 875, 1293, 1747
EcoT14I CCWWGG 2 cut(s) 651, 1220
EcoT22I ATGCAT 1 cut(s) 1399
EcoT38I GRGCYC 4 cut(s) 285, 922, 1255, 1809
ErhI CCWWGG 2 cut(s) 651, 1220
FalI AAGNNNNNCTT 2 cut(s) 94, 126
FaqI GGGAC 4 cut(s) 146, 444, 1138, 1426
FauI CCCGC 1 cut(s) 469
FauNDI CATATG 1 cut(s) 189
Fnu4HI GCNGC 6 cut(s) 685, 892, 1212, 1415, 1532, 1597
FokI GGATG 7 cut(s) 104, 260, 386, 1133, 1406, 1709, 1739
FriOI GRGCYC 4 cut(s) 285, 922, 1255, 1809
Fsp4HI GCNGC 6 cut(s) 685, 892, 1212, 1415, 1532, 1597
FspBI CTAG 2 cut(s) 1578, 1887
GlaI GCGC 1 cut(s) 1403
GluI GCNGC 6 cut(s) 685, 892, 1212, 1415, 1532, 1597
GsaI CCCAGC 1 cut(s) 1552
GsuI CTGGAG 2 cut(s) 543, 1770
HaeIII GGCC 7 cut(s) 650, 737, 875, 1011, 1128, 1228, 1747
HgaI GACGC 1 cut(s) 1443
HhaI GCGC 1 cut(s) 1404
Hin6I GCGC 1 cut(s) 1402
HinP1I GCGC 1 cut(s) 1402
HincII GTYRAC 2 cut(s) 331, 1903
HindII GTYRAC 2 cut(s) 331, 1903
HindIII AAGCTT 1 cut(s) 1364
HinfI GANTC 3 cut(s) 35, 332, 587
HphI GGTGA 2 cut(s) 494, 1617
Hpy166II GTNNAC 5 cut(s) 331, 1046, 1477, 1892, 1903
Hpy188I TCNGA 9 cut(s) 562, 599, 745, 781, 829, 934, 1006, 1057, 1425
Hpy188III TCNNGA 4 cut(s) 39, 368, 923, 1820
Hpy8I GTNNAC 5 cut(s) 331, 1046, 1477, 1892, 1903
HpyAV CCTTC 7 cut(s) 4, 67, 82, 640, 727, 1192, 1489
HpyCH4III ACNGT 3 cut(s) 319, 1002, 1050
HpyCH4IV ACGT 3 cut(s) 835, 1282, 1846
HpyCH4V TGCA 7 cut(s) 413, 594, 768, 855, 1397, 1596, 1898
HpyF10VI GCNNNNNNNGC 3 cut(s) 527, 579, 1528
HpyF3I CTNAG 1 cut(s) 396
HpySE526I ACGT 3 cut(s) 835, 1282, 1846
HspAI GCGC 1 cut(s) 1402
Kzo9I GATC 2 cut(s) 1330, 1729
LmnI GCTCC 5 cut(s) 280, 579, 917, 925, 1337
Lsp1109I GCAGC 6 cut(s) 696, 903, 1223, 1401, 1518, 1608
LweI GCATC 6 cut(s) 603, 965, 1384, 1669, 1687, 1783
MaeI CTAG 2 cut(s) 1578, 1887
MaeII ACGT 3 cut(s) 835, 1282, 1846
MalI GATC 2 cut(s) 1332, 1731
MboI GATC 2 cut(s) 1330, 1729
MhlI GDGCHC 6 cut(s) 285, 575, 922, 1255, 1577, 1809
MluCI AATT 9 cut(s) 106, 363, 485, 928, 1181, 1189, 1380, 1616, 1863
MlyI GAGTC 1 cut(s) 326
MmeI TCCRAC 1 cut(s) 1175
Mph1103I ATGCAT 1 cut(s) 1399
MroXI GAANNNNTTC 1 cut(s) 109
MseI TTAA 9 cut(s) 270, 669, 705, 789, 896, 1091, 1233, 1619, 1862
MspR9I CCNGG 3 cut(s) 877, 1295, 1749
Mva1269I GAATGC 1 cut(s) 1591
MvaI CCWGG 3 cut(s) 877, 1295, 1749
MwoI GCNNNNNNNGC 3 cut(s) 527, 579, 1528
NcoI CCATGG 1 cut(s) 1220
NdeI CATATG 1 cut(s) 189
NdeII GATC 2 cut(s) 1330, 1729
NlaIV GGNNCC 2 cut(s) 1292, 1442
NmeAIII GCCGAG 1 cut(s) 1300
NsiI ATGCAT 1 cut(s) 1399
NspI RCATGY 3 cut(s) 755, 1112, 1531
PaeI GCATGC 1 cut(s) 1531
PceI AGGCCT 1 cut(s) 1747
PciI ACATGT 1 cut(s) 751
PctI GAATGC 1 cut(s) 1591
PdmI GAANNNNTTC 1 cut(s) 109
PfeI GAWTC 2 cut(s) 35, 587
PkrI GCNGC 6 cut(s) 686, 893, 1213, 1416, 1533, 1598
PleI GAGTC 1 cut(s) 326
PpsI GAGTC 1 cut(s) 326
PscI ACATGT 1 cut(s) 751
PshAI GACNNNNGTC 1 cut(s) 1438
PshBI ATTAAT 1 cut(s) 270
Psp124BI GAGCTC 2 cut(s) 285, 922
Psp1406I AACGTT 1 cut(s) 1846
Psp6I CCWGG 3 cut(s) 875, 1293, 1747
PspFI CCCAGC 1 cut(s) 1548
PspGI CCWGG 3 cut(s) 875, 1293, 1747
PspN4I GGNNCC 2 cut(s) 1292, 1442
PspPI GGNCC 5 cut(s) 1010, 1227, 1290, 1440, 1483
PstI CTGCAG 1 cut(s) 1900
PstNI CAGNNNCTG 1 cut(s) 785
RsaI GTAC 2 cut(s) 492, 1304
RsaNI GTAC 2 cut(s) 491, 1303
SacI GAGCTC 2 cut(s) 285, 922
SaqAI TTAA 9 cut(s) 270, 669, 705, 789, 896, 1091, 1233, 1619, 1862
SatI GCNGC 6 cut(s) 685, 892, 1212, 1415, 1532, 1597
Sau3AI GATC 2 cut(s) 1330, 1729
Sau96I GGNCC 5 cut(s) 1010, 1227, 1290, 1440, 1483
SchI GAGTC 1 cut(s) 326
ScrFI CCNGG 3 cut(s) 877, 1295, 1749
SduI GDGCHC 6 cut(s) 285, 575, 922, 1255, 1577, 1809
SfaNI GCATC 6 cut(s) 603, 965, 1384, 1669, 1687, 1783
SfcI CTRYAG 1 cut(s) 1896
SinI GGWCC 3 cut(s) 1290, 1440, 1483
SmlI CTYRAG 3 cut(s) 368, 1736, 1808
SmoI CTYRAG 3 cut(s) 368, 1736, 1808
SphI GCATGC 1 cut(s) 1531
Sse9I AATT 9 cut(s) 106, 363, 485, 928, 1181, 1189, 1380, 1616, 1863
SseBI AGGCCT 1 cut(s) 1747
SsiI CCGC 2 cut(s) 476, 845
SspI AATATT 1 cut(s) 1543
SspMI CTAG 2 cut(s) 1578, 1887
SstI GAGCTC 2 cut(s) 285, 922
StuI AGGCCT 1 cut(s) 1747
StyD4I CCNGG 3 cut(s) 875, 1293, 1747
StyI CCWWGG 2 cut(s) 651, 1220
TaaI ACNGT 3 cut(s) 319, 1002, 1050
TaiI ACGT 3 cut(s) 838, 1285, 1849
TaqI TCGA 1 cut(s) 1669
TasI AATT 9 cut(s) 106, 363, 485, 928, 1181, 1189, 1380, 1616, 1863
TfiI GAWTC 2 cut(s) 35, 587
Tru1I TTAA 9 cut(s) 270, 669, 705, 789, 896, 1091, 1233, 1619, 1862
Tru9I TTAA 9 cut(s) 270, 669, 705, 789, 896, 1091, 1233, 1619, 1862
TscAI CASTG 4 cut(s) 580, 589, 1005, 1567
TseI GCWGC 6 cut(s) 684, 891, 1211, 1414, 1531, 1596
TspDTI ATGAA 7 cut(s) 108, 206, 873, 1041, 1373, 1508, 1616
TspGWI ACGGA 3 cut(s) 103, 295, 475
TspRI CASTG 4 cut(s) 580, 589, 1005, 1567
VpaK11BI GGWCC 3 cut(s) 1290, 1440, 1483
VspI ATTAAT 1 cut(s) 270
XapI RAATTY 3 cut(s) 106, 363, 1380
XceI RCATGY 3 cut(s) 755, 1112, 1531
XcmI CCANNNNNNNNNTGG 1 cut(s) 911
XmnI GAANNNNTTC 1 cut(s) 109
XspI CTAG 2 cut(s) 1578, 1887
Zsp2I ATGCAT 1 cut(s) 1399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.