RLG00000002025
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0002258
Physical Location & Seq
Reverse (-)
24434471 .. 24436378
1908 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002025

Sequence Viewer

Length: 1821 bp
ATGGGAAGGAAGGAGAGGACACCTTTGGAGTTTGAATCAGGAAAAGGGAAGAAAAAGCACAAGGAGAAAAGGAAGGAGAAAGCAAAGAAGGATGAACTTGAAAAAAATTCTTCCGTGCTTGAAGTCTGTGGGGACAAAATGGGCAAGGAAGTTGAGGGGCTGAAATATGACAAGACTGGTGGAAATCATATGAATAGTGGAGAAGAAGCCAATAAGAAAAAGAAAAGGAGGAGGGAAAAGAAGGGGAATGATATGGTAATAGATATGATTAATAAAAAGGAGCTCATAAATGATGGGGAGAAATCCGTTGGGAAAACTGTGGAGAAAGTTGACTCTACAGGTAGTGTAAAGAAGACACAAAAAATTCTTGAGGATGGAAAAGTAGGTGTGGCAACTGAGTATGGAGATGTTGCACAAATAAACAACAAGGGAGGAAATAAAAAGAAAAAAGAGAAGAAAGGGAAGAGGGAAAAAACGGGTGGTGAATTGGTACCGGATGTCACAAGTGATGGAATGGAGGCTGGAGTAGCAAGTCACCGTTTAGATGGGCATATCGTGGCTGAAAATATGGGCACTGGGAGCAGTGAAACGTGCATCAGAAACATGGAGGCTGTTGATGTAGATGGTGGGAAAACAAGGAAGAAGAAGGCCAAGGCAAACTCCCTTGTTAATGGAGAAGATAGCAGCAGAAATGTGGAGGTTGTTAATGTAGAAGATGGTAAAAAAAGAAAGAAGGCCAAGTCAGAGAAACACGTTGTAGAAGATTGCAACAGAAAATCAGAGGCTGTTAATGTAGGAAATAGTAAGAAAAGGAAGAAGTCCAAGTCGGAGAAACGTGGTATTGCGGAGATTTGCAATGAAGACAAGAAAAAGGCCAGAGTAAGTTTTGCTGATGATGTGGAGGTCTTCTCACCGTCTGATGGCCCAAATGATGAGCATGAAGACCTTGTAAGAGGTAAACGGTTTTCAGAAGAAGAAGACAAGATTGTGAAAGAGGCTGTTTTAAGATACATAGAGGAACATGCTATAGGGGATGATGGCCTCAACATGGTTCTGCGGTGTAAATCCCACCCTGAAGTCAAAAACCACCCAGAATTGAAAAATTGTTGGAAGGATATTGGGGCAGCCTTACCATGGAGGCCCTTTAAGAGTGTGTATTATAGAGCCCATATTTTGTTTGAACGAGCCGAGAAACGTATTTGGACCCCGGAAGAGTACGAAGAGGTCAAGAAGTTCCATAAAGATCGGGGAGCTGATTGGAGAACTTTGGGCGATAAGCTTGGCAAACATAGAATTCATGTCAAGGATGCATGGCGCAGAATAAAACTGCCAAATCAGAAGAAAGGACGCTGGTCCCAAGAGGAGTACGAGACTTTATTTGATTTAGTGAACATGGATCTGCGTATGAAGGTTTTTGAAGAAAAGAAAACCAAGCATGGCATGCTGCGAGATAATATTTGCTGGGAGGCAATCAGTGAAACGTTGGGCACTAGAACCAATGCTGTTTGCAGCATGAAGTGGTATAACCAATTAACATCACCTTTGGTAAGCCAAAAGCTGTGGGCTGACATTGACGACTATCGGCTGCTTGATGCTCTCAATAGCTTGGATGCTTGCTGTATTGAAGATGTTGATTGGGATGATCTGCTTGAGCATAGGCCTGGAGATGTTTGCCAAAAGCGATGGCATCAAATGGTCAAACATATTGGTCACCATGGGCTCAAGTCCTTTCCTGAACAAGTGGAAGTTTTATCTAAACGTTATCTTGCCGATTTAATTGAAGCAAGAGAAATCTATGCTAGTAAACCTGCAGTTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

607

Amino Acids

69.22

Weight (kDa)

9.08

Isoelectric Point (pI)

38.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_6 PF13921 401 - 459 1.1e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1816
Acc65I GGTACC 1 cut(s) 490
AccB1I GGYRCC 1 cut(s) 490
AciI CCGC 2 cut(s) 845, 1057
AclI AACGTT 2 cut(s) 1481, 1759
AclWI GGATC 1 cut(s) 1404
AcsI RAATTY 3 cut(s) 106, 363, 1293
AcuI CTGAAG 1 cut(s) 1095
AfaI GTAC 3 cut(s) 492, 1217, 1367
AfiI CCNNNNNNNGG 3 cut(s) 920, 1048, 1134
AflIII ACRYGT 1 cut(s) 751
AgsI TTSAA 8 cut(s) 35, 101, 122, 1099, 1181, 1418, 1625, 1781
AjnI CCWGG 1 cut(s) 1660
AluBI AGCT 5 cut(s) 283, 1253, 1279, 1558, 1605
AluI AGCT 5 cut(s) 283, 1253, 1279, 1558, 1605
Alw21I GWGCWC 1 cut(s) 285
Alw26I GTCTC 1 cut(s) 1364
AlwI GGATC 1 cut(s) 1404
AlwNI CAGNNNCTG 1 cut(s) 785
AoxI GGCC 7 cut(s) 648, 735, 873, 922, 1039, 1139, 1658
ApeKI GCWGC 5 cut(s) 684, 1124, 1444, 1509, 1585
ApoI RAATTY 3 cut(s) 106, 363, 1293
AseI ATTAAT 1 cut(s) 270
Asp718I GGTACC 1 cut(s) 490
AspLEI GCGC 1 cut(s) 1317
AspS9I GGNCC 4 cut(s) 923, 1140, 1203, 1353
AsuC2I CCSGG 1 cut(s) 1208
AsuHPI GGTGA 5 cut(s) 494, 527, 903, 1530, 1703
AvaII GGWCC 2 cut(s) 1203, 1353
BaeGI GKGCMC 2 cut(s) 575, 1490
BanI GGYRCC 1 cut(s) 490
BanII GRGCYC 3 cut(s) 285, 1168, 1722
BbsI GAAGAC 5 cut(s) 359, 867, 898, 948, 984
Bbv12I GWGCWC 1 cut(s) 285
BbvI GCAGC 5 cut(s) 696, 1136, 1431, 1521, 1572
BccI CCATC 9 cut(s) 287, 368, 503, 539, 617, 710, 914, 1031, 1677
BciT130I CCWGG 1 cut(s) 1662
BcnI CCSGG 1 cut(s) 1208
BcoDI GTCTC 1 cut(s) 1364
BfaI CTAG 2 cut(s) 1491, 1800
BfmI CTRYAG 3 cut(s) 336, 1026, 1809
BfuAI ACCTGC 1 cut(s) 1816
BisI GCNGC 5 cut(s) 685, 1125, 1445, 1510, 1586
BlsI GCNGC 5 cut(s) 686, 1126, 1446, 1511, 1587
Bme1390I CCNGG 2 cut(s) 1208, 1662
Bme18I GGWCC 2 cut(s) 1203, 1353
BmgT120I GGNCC 4 cut(s) 923, 1140, 1203, 1353
BmiI GGNNCC 3 cut(s) 492, 1205, 1355
BmrFI CCNGG 2 cut(s) 1208, 1662
BmrI ACTGGG 1 cut(s) 585
BmsI GCATC 5 cut(s) 603, 1297, 1582, 1600, 1696
BmuI ACTGGG 1 cut(s) 585
BoxI GACNNNNGTC 1 cut(s) 1351
BpiI GAAGAC 5 cut(s) 359, 867, 898, 948, 984
BplI GAGNNNNNCTC 2 cut(s) 893, 925
BpmI CTGGAG 2 cut(s) 543, 1683
BpuEI CTTGAG 3 cut(s) 389, 1670, 1706
BpuMI CCSGG 1 cut(s) 1208
BsaJI CCNNGG 4 cut(s) 651, 1133, 1206, 1714
BsaWI WCCGGW 1 cut(s) 493
Bsc4I CCNNNNNNNGG 3 cut(s) 920, 1048, 1134
Bse1I ACTGG 2 cut(s) 181, 580
Bse3DI GCAATG 1 cut(s) 862
BseBI CCWGG 1 cut(s) 1662
BseDI CCNNGG 4 cut(s) 651, 1133, 1206, 1714
BseGI GGATG 7 cut(s) 97, 379, 502, 1039, 1312, 1615, 1645
BseLI CCNNNNNNNGG 3 cut(s) 920, 1048, 1134
BseMI GCAATG 1 cut(s) 862
BseMII CTCAG 1 cut(s) 387
BseNI ACTGG 2 cut(s) 181, 580
BseRI GAGGAG 2 cut(s) 244, 1376
BseSI GKGCMC 2 cut(s) 575, 1490
BseXI GCAGC 5 cut(s) 696, 1136, 1431, 1521, 1572
BseYI CCCAGC 1 cut(s) 1461
BshFI GGCC 7 cut(s) 650, 737, 875, 924, 1041, 1141, 1660
BshNI GGYRCC 1 cut(s) 490
BsiHKAI GWGCWC 1 cut(s) 285
BsiSI CCGG 2 cut(s) 494, 1208
BslFI GGGAC 2 cut(s) 146, 1339
BslI CCNNNNNNNGG 3 cut(s) 920, 1048, 1134
BsmAI GTCTC 1 cut(s) 1364
BsmFI GGGAC 2 cut(s) 146, 1339
BsnI GGCC 7 cut(s) 650, 737, 875, 924, 1041, 1141, 1660
Bsp1286I GDGCHC 5 cut(s) 285, 575, 1168, 1490, 1722
Bsp143I GATC 3 cut(s) 1243, 1396, 1642
Bsp19I CCATGG 2 cut(s) 1133, 1714
BspACI CCGC 2 cut(s) 845, 1057
BspANI GGCC 7 cut(s) 650, 737, 875, 924, 1041, 1141, 1660
BspCNI CTCAG 1 cut(s) 388
BspLI GGNNCC 3 cut(s) 492, 1205, 1355
BspMAI CTGCAG 1 cut(s) 1813
BspMI ACCTGC 1 cut(s) 1816
BspPI GGATC 1 cut(s) 1404
BspT107I GGYRCC 1 cut(s) 490
BsrDI GCAATG 1 cut(s) 862
BsrI ACTGG 2 cut(s) 181, 580
BssECI CCNNGG 4 cut(s) 651, 1133, 1206, 1714
BssMI GATC 3 cut(s) 1243, 1396, 1642
BssT1I CCWWGG 3 cut(s) 651, 1133, 1714
Bst2UI CCWGG 1 cut(s) 1662
Bst4CI ACNGT 4 cut(s) 319, 539, 915, 963
Bst6I CTCTTC 3 cut(s) 458, 1206, 1215
BstAPI GCANNNNNTGC 1 cut(s) 1441
BstC8I GCNNGC 2 cut(s) 1442, 1615
BstDEI CTNAG 1 cut(s) 396
BstDSI CCRYGG 2 cut(s) 1133, 1714
BstEII GGTNACC 1 cut(s) 1709
BstF5I GGATG 7 cut(s) 97, 379, 502, 1039, 1312, 1615, 1645
BstHHI GCGC 1 cut(s) 1317
BstKTI GATC 3 cut(s) 1246, 1399, 1645
BstMAI GTCTC 1 cut(s) 1364
BstMBI GATC 3 cut(s) 1243, 1396, 1642
BstMWI GCNNNNNNNGC 3 cut(s) 527, 579, 1441
BstNI CCWGG 1 cut(s) 1662
BstNSI RCATGY 2 cut(s) 1025, 1444
BstPAI GACNNNNGTC 1 cut(s) 1351
BstPI GGTNACC 1 cut(s) 1709
BstSCI CCNGG 2 cut(s) 1206, 1660
BstSFI CTRYAG 3 cut(s) 336, 1026, 1809
BstSLI GKGCMC 2 cut(s) 575, 1490
BstV1I GCAGC 5 cut(s) 696, 1136, 1431, 1521, 1572
BstV2I GAAGAC 5 cut(s) 359, 867, 898, 948, 984
BstX2I RGATCY 1 cut(s) 1396
BstYI RGATCY 1 cut(s) 1396
BsuRI GGCC 7 cut(s) 650, 737, 875, 924, 1041, 1141, 1660
BtgI CCRYGG 2 cut(s) 1133, 1714
BtgZI GCGATG 1 cut(s) 1696
BtsCI GGATG 7 cut(s) 97, 379, 502, 1039, 1312, 1615, 1645
BtsI GCAGTG 1 cut(s) 589
BtsIMutI CAGTG 3 cut(s) 573, 589, 1480
BveI ACCTGC 1 cut(s) 1816
Cac8I GCNNGC 2 cut(s) 1442, 1615
CaiI CAGNNNCTG 1 cut(s) 785
CfoI GCGC 1 cut(s) 1317
Cfr13I GGNCC 4 cut(s) 923, 1140, 1203, 1353
CseI GACGC 1 cut(s) 1356
Csp6I GTAC 3 cut(s) 491, 1216, 1366
CspCI CAANNNNNGTGG 4 cut(s) 160, 195, 1541, 1576
CviQI GTAC 3 cut(s) 491, 1216, 1366
DdeI CTNAG 1 cut(s) 396
DpnI GATC 3 cut(s) 1245, 1398, 1644
DpnII GATC 3 cut(s) 1243, 1396, 1642
Eam1104I CTCTTC 3 cut(s) 458, 1206, 1215
EarI CTCTTC 3 cut(s) 458, 1206, 1215
Ecl136II GAGCTC 1 cut(s) 283
Eco130I CCWWGG 3 cut(s) 651, 1133, 1714
Eco147I AGGCCT 1 cut(s) 1660
Eco24I GRGCYC 3 cut(s) 285, 1168, 1722
Eco47I GGWCC 2 cut(s) 1203, 1353
Eco53kI GAGCTC 1 cut(s) 283
Eco57I CTGAAG 1 cut(s) 1095
Eco91I GGTNACC 1 cut(s) 1709
EcoICRI GAGCTC 1 cut(s) 283
EcoO109I RGGNCCY 1 cut(s) 1140
EcoO65I GGTNACC 1 cut(s) 1709
EcoRI GAATTC 1 cut(s) 1293
EcoRII CCWGG 1 cut(s) 1660
EcoT14I CCWWGG 3 cut(s) 651, 1133, 1714
EcoT22I ATGCAT 1 cut(s) 1312
EcoT38I GRGCYC 3 cut(s) 285, 1168, 1722
ErhI CCWWGG 3 cut(s) 651, 1133, 1714
FaqI GGGAC 2 cut(s) 146, 1339
FauNDI CATATG 1 cut(s) 189
Fnu4HI GCNGC 5 cut(s) 685, 1125, 1445, 1510, 1586
FokI GGATG 7 cut(s) 104, 386, 509, 1046, 1319, 1622, 1652
FriOI GRGCYC 3 cut(s) 285, 1168, 1722
Fsp4HI GCNGC 5 cut(s) 685, 1125, 1445, 1510, 1586
FspBI CTAG 2 cut(s) 1491, 1800
GlaI GCGC 1 cut(s) 1316
GluI GCNGC 5 cut(s) 685, 1125, 1445, 1510, 1586
GsaI CCCAGC 1 cut(s) 1465
GsuI CTGGAG 2 cut(s) 543, 1683
HaeIII GGCC 7 cut(s) 650, 737, 875, 924, 1041, 1141, 1660
HapII CCGG 2 cut(s) 494, 1208
HgaI GACGC 1 cut(s) 1356
HhaI GCGC 1 cut(s) 1317
Hin6I GCGC 1 cut(s) 1315
HinP1I GCGC 1 cut(s) 1315
HincII GTYRAC 2 cut(s) 331, 1816
HindII GTYRAC 2 cut(s) 331, 1816
HindIII AAGCTT 1 cut(s) 1277
HinfI GANTC 2 cut(s) 35, 332
HpaII CCGG 2 cut(s) 494, 1208
HphI GGTGA 5 cut(s) 494, 527, 903, 1530, 1703
Hpy166II GTNNAC 5 cut(s) 331, 959, 1390, 1805, 1816
Hpy188I TCNGA 7 cut(s) 599, 745, 781, 829, 919, 970, 1338
Hpy188III TCNNGA 4 cut(s) 39, 368, 1228, 1733
Hpy8I GTNNAC 5 cut(s) 331, 959, 1390, 1805, 1816
HpyAV CCTTC 8 cut(s) 4, 67, 82, 235, 640, 727, 1105, 1402
HpyCH4III ACNGT 4 cut(s) 319, 539, 915, 963
HpyCH4IV ACGT 6 cut(s) 590, 753, 835, 1195, 1481, 1759
HpyCH4V TGCA 7 cut(s) 413, 594, 768, 855, 1310, 1509, 1811
HpyF10VI GCNNNNNNNGC 3 cut(s) 527, 579, 1441
HpyF3I CTNAG 1 cut(s) 396
HpySE526I ACGT 6 cut(s) 590, 753, 835, 1195, 1481, 1759
HspAI GCGC 1 cut(s) 1315
KpnI GGTACC 1 cut(s) 494
Kzo9I GATC 3 cut(s) 1243, 1396, 1642
LmnI GCTCC 3 cut(s) 280, 579, 1250
Lsp1109I GCAGC 5 cut(s) 696, 1136, 1431, 1521, 1572
LweI GCATC 5 cut(s) 603, 1297, 1582, 1600, 1696
MaeI CTAG 2 cut(s) 1491, 1800
MaeII ACGT 6 cut(s) 590, 753, 835, 1195, 1481, 1759
MaeIII GTNAC 3 cut(s) 499, 533, 1709
MalI GATC 3 cut(s) 1245, 1398, 1644
MboI GATC 3 cut(s) 1243, 1396, 1642
MflI RGATCY 1 cut(s) 1396
MhlI GDGCHC 5 cut(s) 285, 575, 1168, 1490, 1722
MluCI AATT 8 cut(s) 106, 363, 485, 1094, 1102, 1293, 1529, 1776
MlyI GAGTC 1 cut(s) 326
MmeI TCCRAC 2 cut(s) 807, 1088
Mph1103I ATGCAT 1 cut(s) 1312
MseI TTAA 8 cut(s) 270, 669, 705, 789, 1004, 1146, 1532, 1775
MspI CCGG 2 cut(s) 494, 1208
MspR9I CCNGG 2 cut(s) 1208, 1662
MvaI CCWGG 1 cut(s) 1662
MwoI GCNNNNNNNGC 3 cut(s) 527, 579, 1441
NciI CCSGG 1 cut(s) 1208
NcoI CCATGG 2 cut(s) 1133, 1714
NdeI CATATG 1 cut(s) 189
NdeII GATC 3 cut(s) 1243, 1396, 1642
NlaIV GGNNCC 3 cut(s) 492, 1205, 1355
NmeAIII GCCGAG 1 cut(s) 1213
NmuCI GTSAC 3 cut(s) 499, 533, 1709
NsiI ATGCAT 1 cut(s) 1312
NspI RCATGY 2 cut(s) 1025, 1444
PaeI GCATGC 1 cut(s) 1444
PceI AGGCCT 1 cut(s) 1660
PfeI GAWTC 1 cut(s) 35
PkrI GCNGC 5 cut(s) 686, 1126, 1446, 1511, 1587
PleI GAGTC 1 cut(s) 326
PpsI GAGTC 1 cut(s) 326
PshAI GACNNNNGTC 1 cut(s) 1351
PshBI ATTAAT 1 cut(s) 270
Psp124BI GAGCTC 1 cut(s) 285
Psp1406I AACGTT 2 cut(s) 1481, 1759
Psp6I CCWGG 1 cut(s) 1660
PspEI GGTNACC 1 cut(s) 1709
PspFI CCCAGC 1 cut(s) 1461
PspGI CCWGG 1 cut(s) 1660
PspN4I GGNNCC 3 cut(s) 492, 1205, 1355
PspPI GGNCC 4 cut(s) 923, 1140, 1203, 1353
PstI CTGCAG 1 cut(s) 1813
PstNI CAGNNNCTG 1 cut(s) 785
PsuI RGATCY 1 cut(s) 1396
RsaI GTAC 3 cut(s) 492, 1217, 1367
RsaNI GTAC 3 cut(s) 491, 1216, 1366
SacI GAGCTC 1 cut(s) 285
SaqAI TTAA 8 cut(s) 270, 669, 705, 789, 1004, 1146, 1532, 1775
SatI GCNGC 5 cut(s) 685, 1125, 1445, 1510, 1586
Sau3AI GATC 3 cut(s) 1243, 1396, 1642
Sau96I GGNCC 4 cut(s) 923, 1140, 1203, 1353
SchI GAGTC 1 cut(s) 326
ScrFI CCNGG 2 cut(s) 1208, 1662
SduI GDGCHC 5 cut(s) 285, 575, 1168, 1490, 1722
SfaNI GCATC 5 cut(s) 603, 1297, 1582, 1600, 1696
SfcI CTRYAG 3 cut(s) 336, 1026, 1809
SinI GGWCC 2 cut(s) 1203, 1353
SmlI CTYRAG 3 cut(s) 368, 1649, 1721
SmoI CTYRAG 3 cut(s) 368, 1649, 1721
SphI GCATGC 1 cut(s) 1444
Sse9I AATT 8 cut(s) 106, 363, 485, 1094, 1102, 1293, 1529, 1776
SseBI AGGCCT 1 cut(s) 1660
SsiI CCGC 2 cut(s) 845, 1057
SspI AATATT 1 cut(s) 1456
SspMI CTAG 2 cut(s) 1491, 1800
SstI GAGCTC 1 cut(s) 285
StuI AGGCCT 1 cut(s) 1660
StyD4I CCNGG 2 cut(s) 1206, 1660
StyI CCWWGG 3 cut(s) 651, 1133, 1714
TaaI ACNGT 4 cut(s) 319, 539, 915, 963
TaiI ACGT 6 cut(s) 593, 756, 838, 1198, 1484, 1762
TasI AATT 8 cut(s) 106, 363, 485, 1094, 1102, 1293, 1529, 1776
TfiI GAWTC 1 cut(s) 35
Tru1I TTAA 8 cut(s) 270, 669, 705, 789, 1004, 1146, 1532, 1775
Tru9I TTAA 8 cut(s) 270, 669, 705, 789, 1004, 1146, 1532, 1775
TscAI CASTG 3 cut(s) 580, 589, 1480
TseFI GTSAC 3 cut(s) 499, 533, 1709
TseI GCWGC 5 cut(s) 684, 1124, 1444, 1509, 1585
Tsp45I GTSAC 3 cut(s) 499, 533, 1709
TspDTI ATGAA 7 cut(s) 108, 206, 873, 954, 1286, 1421, 1529
TspGWI ACGGA 2 cut(s) 103, 295
TspRI CASTG 3 cut(s) 580, 589, 1480
VpaK11BI GGWCC 2 cut(s) 1203, 1353
VspI ATTAAT 1 cut(s) 270
XapI RAATTY 3 cut(s) 106, 363, 1293
XceI RCATGY 2 cut(s) 1025, 1444
XspI CTAG 2 cut(s) 1491, 1800
Zsp2I ATGCAT 1 cut(s) 1312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.