MD04G1037700.v1.1
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0002258
Physical Location & Seq
Forward (+)
4203991 .. 4207073
3083 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1037700.v1.1.491

Sequence Viewer

Length: 1680 bp
ATGAAAAAGAAAAGGAAGAGGGAAATGGAGGGGTTCGATGGTGGATTGAAGTTGAAGCAGAATGATGTACAGCAGCTTGGAAATGATAAAGAGAAATCCAATGAATTTGACAAGAATGTAGGAACTGATAAGGAAAGTGGGGAAGGCAGTGGTGGAACTGATAGAGAAAGTGGAGAAGGGGCCAAAAAGAAAAAGAAAAGGAAGAAGGAAACAGAGGGGGTCAATAGTGAATTGAAGTCGAACCAGAGTGATGAACGGCTGCTCGGAAATGATAGAGAGAAATCCAATGGGAAAATCATGGAAGAAGCTGACATTGCAGATAACGAAAAGAAGAGAAAGAAACTATCTGAGGATGACGAAATGGGCGATGCCAAAATGAACAAAGGAGAACTGAATAAAAAGAAAAAGAAAAAGAAGAAGGAGAAGACAGAAATGGTGGGCAGTGAATCGGCACAGAACATCGTAACTGATGGAAAGGAGGCTGGAGTAGAAAGTAAGCATTCAGATGGGCAAATCATGGAGAAGGGTGGAATCATGAAAAAAGAGAAAACAAAGAATAGTAAGAATTCAAGAAGTGAAGTGCAGGAAACTGGAGGTGAGAAATTGGGCAGCAAAAGCAGAACTCAAGAAAATAATTCCTTAGAGAATGACGGTAATGTTCATGGAACTGGAGACGAGATAAGCAACAGAAATACAGAGGATGAAAATTCTACACAGAAAGAAACATCAAAAAGAGTACATTTTGCTGATGATATTGAGGTCTTTTCACTGTCTGATGGCTCAAAAGATGCAGAAGTGGGCAAGGTACGAGGTAAGCGGTTTTCAGCAGAAGAAGACGAGCTTGTGAAAAAGGCTGTTTTAACATACATAGAGGAACATCAGCTGGGTGACGAAGGCATTGACATGGTACTCAATTGTAAGAATTACCCTGAAATCAGAAATTGTTGGAAGGATATTGGGGAAACCTTACCCTGGAGGGATAAGAAAAGCATATATTATCGAGCCCATATGTTATTAGAACGAGCTTCAGAACGTACTTGGACCAAGGAAGAGTATGAAAAAGTCAGACGTGCTGCTAACGAAGCTAAGGAGAAAGGTGAAGCCAAACCCAACTGGAGAAAGGTGGGTAATGAACTTGGCAAACATAGAATTCATGTCAAGGATGCATGGCGTAGAATAAAACTGCAAAACATGAAGACAGGAGTGTGGTCCCAAGAGGAGTACCAGACTTTGTTTGATTTAGTGAACAAGGATCTGCGGATGCGGGCATTGGAAGAAAAAAAATATTCCAAGCATGGGATGCTGCGAGATAATATTAAGTGGGAGGCAATCAGTGAGACTTTGGGCACCAGAACCAATCCTGTTTGTTGCCAGAAGTGGTATAACCAATTGGCTTCACCTTTGGTAGCTGATGGTCAGTGGGCTGATGTTGATGACTACCGCCTAGTTTACGCTCTTGACAGCTTGGATGCTTGTTGCATGGAAGAAGTTGATTGGGATGATCTGCTTGAGCATAGGTCTGGAGATGTATGTAAAAAGCGATGGAATCAAATGGTCAGACACATTGGTCAGTATGCGATGAAGTCATTTGCAGAACAAGTTGAAATTTTGTCGAAACGTTATTGTCCTGATGCGCTTGAAGCAAAGGAAGCCTGTGACAGTAAGCCAATAGTCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

560

Amino Acids

64.06

Weight (kDa)

7.14

Isoelectric Point (pI)

35.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_6 PF13921 347 - 411 5.2e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1566
AccB1I GGYRCC 1 cut(s) 1346
AciI CCGC 4 cut(s) 817, 1258, 1264, 1441
AclI AACGTT 1 cut(s) 1618
AclWI GGATC 1 cut(s) 1260
AcsI RAATTY 5 cut(s) 104, 565, 706, 1149, 1605
AcuI CTGAAG 1 cut(s) 1011
AfaI GTAC 6 cut(s) 69, 738, 807, 909, 1036, 1223
AfiI CCNNNNNNNGG 2 cut(s) 972, 1296
AgsI TTSAA 6 cut(s) 49, 55, 235, 570, 1604, 1640
AjiI CACGTC 1 cut(s) 1070
AjnI CCWGG 1 cut(s) 971
AluBI AGCT 8 cut(s) 76, 308, 841, 883, 1025, 1085, 1409, 1464
AluI AGCT 8 cut(s) 76, 308, 841, 883, 1025, 1085, 1409, 1464
Alw26I GTCTC 2 cut(s) 666, 1331
AlwI GGATC 1 cut(s) 1260
AoxI GGCC 1 cut(s) 180
ApeKI GCWGC 5 cut(s) 73, 259, 609, 1073, 1303
ApoI RAATTY 5 cut(s) 104, 565, 706, 1149, 1605
AspLEI GCGC 1 cut(s) 1636
AspS9I GGNCC 3 cut(s) 180, 1041, 1209
AsuHPI GGTGA 4 cut(s) 608, 899, 1109, 1389
AvaII GGWCC 2 cut(s) 1041, 1209
BaeGI GKGCMC 1 cut(s) 1349
BanI GGYRCC 1 cut(s) 1346
BanII GRGCYC 1 cut(s) 1006
BbsI GAAGAC 3 cut(s) 431, 840, 1202
BbvI GCAGC 5 cut(s) 85, 246, 621, 1060, 1290
BccI CCATC 6 cut(s) 32, 464, 500, 770, 1406, 1536
BceAI ACGGC 1 cut(s) 272
BciT130I CCWGG 1 cut(s) 973
BcoDI GTCTC 2 cut(s) 666, 1331
BfaI CTAG 1 cut(s) 1445
BisI GCNGC 5 cut(s) 74, 260, 610, 1074, 1304
BlsI GCNGC 5 cut(s) 75, 261, 611, 1075, 1305
Bme1390I CCNGG 1 cut(s) 973
Bme18I GGWCC 2 cut(s) 1041, 1209
BmgBI CACGTC 1 cut(s) 1070
BmgT120I GGNCC 3 cut(s) 180, 1041, 1209
BmiI GGNNCC 3 cut(s) 181, 1211, 1348
BmrFI CCNGG 1 cut(s) 973
BmsI GCATC 7 cut(s) 358, 778, 1153, 1251, 1290, 1459, 1621
BpiI GAAGAC 3 cut(s) 431, 840, 1202
BpmI CTGGAG 6 cut(s) 504, 612, 690, 994, 1135, 1542
Bpu10I CCTNAGC 1 cut(s) 1086
BpuEI CTTGAG 2 cut(s) 609, 1529
BsaJI CCNNGG 2 cut(s) 971, 1044
Bsc4I CCNNNNNNNGG 2 cut(s) 972, 1296
Bse1I ACTGG 3 cut(s) 595, 673, 1118
Bse3DI GCAATG 1 cut(s) 312
BseBI CCWGG 1 cut(s) 973
BseDI CCNNGG 2 cut(s) 971, 1044
BseGI GGATG 7 cut(s) 358, 706, 1168, 1266, 1305, 1474, 1504
BseLI CCNNNNNNNGG 2 cut(s) 972, 1296
BseMI GCAATG 1 cut(s) 312
BseMII CTCAG 1 cut(s) 339
BseNI ACTGG 3 cut(s) 595, 673, 1118
BseRI GAGGAG 1 cut(s) 1232
BseSI GKGCMC 1 cut(s) 1349
BseXI GCAGC 5 cut(s) 85, 246, 621, 1060, 1290
BseYI CCCAGC 1 cut(s) 883
BsgI GTGCAG 1 cut(s) 602
BshFI GGCC 1 cut(s) 182
BshNI GGYRCC 1 cut(s) 1346
BslFI GGGAC 1 cut(s) 1195
BslI CCNNNNNNNGG 2 cut(s) 972, 1296
BsmAI GTCTC 2 cut(s) 666, 1331
BsmBI CGTCTC 1 cut(s) 666
BsmFI GGGAC 1 cut(s) 1195
BsmI GAATGC 1 cut(s) 499
BsnI GGCC 1 cut(s) 182
Bsp1286I GDGCHC 2 cut(s) 1006, 1349
Bsp1407I TGTACA 1 cut(s) 67
Bsp143I GATC 2 cut(s) 1252, 1501
BspACI CCGC 4 cut(s) 817, 1258, 1264, 1441
BspANI GGCC 1 cut(s) 182
BspCNI CTCAG 1 cut(s) 340
BspHI TCATGA 1 cut(s) 534
BspLI GGNNCC 3 cut(s) 181, 1211, 1348
BspPI GGATC 1 cut(s) 1260
BspT107I GGYRCC 1 cut(s) 1346
BsrDI GCAATG 1 cut(s) 312
BsrGI TGTACA 1 cut(s) 67
BsrI ACTGG 3 cut(s) 595, 673, 1118
BssECI CCNNGG 2 cut(s) 971, 1044
BssMI GATC 2 cut(s) 1252, 1501
BssT1I CCWWGG 1 cut(s) 1044
Bst2UI CCWGG 1 cut(s) 973
Bst4CI ACNGT 3 cut(s) 653, 771, 1661
Bst6I CTCTTC 3 cut(s) 11, 326, 1044
BstAPI GCANNNNNTGC 1 cut(s) 1300
BstAUI TGTACA 1 cut(s) 67
BstC8I GCNNGC 1 cut(s) 1266
BstDEI CTNAG 3 cut(s) 348, 640, 1086
BstF5I GGATG 7 cut(s) 358, 706, 1168, 1266, 1305, 1474, 1504
BstHHI GCGC 1 cut(s) 1636
BstKTI GATC 2 cut(s) 1255, 1504
BstMAI GTCTC 2 cut(s) 666, 1331
BstMBI GATC 2 cut(s) 1252, 1501
BstMWI GCNNNNNNNGC 6 cut(s) 314, 615, 1082, 1300, 1640, 1649
BstNI CCWGG 1 cut(s) 973
BstSCI CCNGG 1 cut(s) 971
BstSLI GKGCMC 1 cut(s) 1349
BstV1I GCAGC 5 cut(s) 85, 246, 621, 1060, 1290
BstV2I GAAGAC 3 cut(s) 431, 840, 1202
BstX2I RGATCY 1 cut(s) 1252
BstYI RGATCY 1 cut(s) 1252
BsuRI GGCC 1 cut(s) 182
BtgZI GCGATG 3 cut(s) 381, 1555, 1592
BtrI CACGTC 1 cut(s) 1070
BtsCI GGATG 7 cut(s) 358, 706, 1168, 1266, 1305, 1474, 1504
BtsI GCAGTG 2 cut(s) 154, 448
BtsIMutI CAGTG 5 cut(s) 154, 448, 767, 1339, 1424
Cac8I GCNNGC 1 cut(s) 1266
CciI TCATGA 1 cut(s) 534
CfoI GCGC 1 cut(s) 1636
Cfr13I GGNCC 3 cut(s) 180, 1041, 1209
Csp6I GTAC 6 cut(s) 68, 737, 806, 908, 1035, 1222
CviQI GTAC 6 cut(s) 68, 737, 806, 908, 1035, 1222
DdeI CTNAG 3 cut(s) 348, 640, 1086
DpnI GATC 2 cut(s) 1254, 1503
DpnII GATC 2 cut(s) 1252, 1501
DrdI GACNNNNNNGTC 1 cut(s) 1566
DseDI GACNNNNNNGTC 1 cut(s) 1566
Eam1104I CTCTTC 3 cut(s) 11, 326, 1044
EarI CTCTTC 3 cut(s) 11, 326, 1044
Eco130I CCWWGG 1 cut(s) 1044
Eco24I GRGCYC 1 cut(s) 1006
Eco47I GGWCC 2 cut(s) 1041, 1209
Eco57I CTGAAG 1 cut(s) 1011
EcoRI GAATTC 2 cut(s) 565, 1149
EcoRII CCWGG 1 cut(s) 971
EcoT14I CCWWGG 1 cut(s) 1044
EcoT22I ATGCAT 1 cut(s) 1168
EcoT38I GRGCYC 1 cut(s) 1006
ErhI CCWWGG 1 cut(s) 1044
Esp3I CGTCTC 1 cut(s) 666
FalI AAGNNNNNCTT 2 cut(s) 825, 857
FaqI GGGAC 1 cut(s) 1195
FauI CCCGC 1 cut(s) 1257
FauNDI CATATG 1 cut(s) 1008
Fnu4HI GCNGC 5 cut(s) 74, 260, 610, 1074, 1304
FokI GGATG 7 cut(s) 365, 713, 1175, 1273, 1312, 1481, 1511
FriOI GRGCYC 1 cut(s) 1006
Fsp4HI GCNGC 5 cut(s) 74, 260, 610, 1074, 1304
FspBI CTAG 1 cut(s) 1445
GlaI GCGC 1 cut(s) 1635
GluI GCNGC 5 cut(s) 74, 260, 610, 1074, 1304
GsaI CCCAGC 1 cut(s) 887
GsuI CTGGAG 6 cut(s) 504, 612, 690, 994, 1135, 1542
HaeIII GGCC 1 cut(s) 182
HhaI GCGC 1 cut(s) 1636
Hin6I GCGC 1 cut(s) 1634
HinP1I GCGC 1 cut(s) 1634
HinfI GANTC 3 cut(s) 446, 531, 1546
HphI GGTGA 4 cut(s) 608, 899, 1109, 1389
Hpy166II GTNNAC 2 cut(s) 1246, 1450
Hpy188I TCNGA 8 cut(s) 266, 349, 505, 775, 938, 1030, 1067, 1559
Hpy188III TCNNGA 6 cut(s) 535, 570, 626, 1457, 1521, 1628
Hpy8I GTNNAC 2 cut(s) 1246, 1450
HpyAV CCTTC 7 cut(s) 137, 170, 199, 412, 517, 887, 943
HpyCH4III ACNGT 3 cut(s) 653, 771, 1661
HpyCH4IV ACGT 3 cut(s) 1033, 1069, 1618
HpyCH4V TGCA 7 cut(s) 317, 583, 791, 1166, 1186, 1479, 1592
HpyF10VI GCNNNNNNNGC 6 cut(s) 314, 615, 1082, 1300, 1640, 1649
HpyF3I CTNAG 3 cut(s) 348, 640, 1086
HpySE526I ACGT 3 cut(s) 1033, 1069, 1618
HspAI GCGC 1 cut(s) 1634
Kzo9I GATC 2 cut(s) 1252, 1501
Lsp1109I GCAGC 5 cut(s) 85, 246, 621, 1060, 1290
LweI GCATC 7 cut(s) 358, 778, 1153, 1251, 1290, 1459, 1621
MaeI CTAG 1 cut(s) 1445
MaeII ACGT 3 cut(s) 1033, 1069, 1618
MaeIII GTNAC 3 cut(s) 463, 887, 1655
MalI GATC 2 cut(s) 1254, 1503
MboI GATC 2 cut(s) 1252, 1501
MfeI CAATTG 2 cut(s) 913, 1388
MflI RGATCY 1 cut(s) 1252
MhlI GDGCHC 2 cut(s) 1006, 1349
MmeI TCCRAC 1 cut(s) 926
Mph1103I ATGCAT 1 cut(s) 1168
MseI TTAA 2 cut(s) 860, 1317
MslI CAYNNNNRTG 2 cut(s) 504, 902
MspA1I CMGCKG 1 cut(s) 883
MspR9I CCNGG 1 cut(s) 973
MunI CAATTG 2 cut(s) 913, 1388
Mva1269I GAATGC 1 cut(s) 499
MvaI CCWGG 1 cut(s) 973
MwoI GCNNNNNNNGC 6 cut(s) 314, 615, 1082, 1300, 1640, 1649
NdeI CATATG 1 cut(s) 1008
NdeII GATC 2 cut(s) 1252, 1501
NlaIV GGNNCC 3 cut(s) 181, 1211, 1348
NmuCI GTSAC 2 cut(s) 887, 1655
NsiI ATGCAT 1 cut(s) 1168
PagI TCATGA 1 cut(s) 534
PcsI WCGNNNNNNNCGW 1 cut(s) 363
PctI GAATGC 1 cut(s) 499
PfeI GAWTC 3 cut(s) 446, 531, 1546
PkrI GCNGC 5 cut(s) 75, 261, 611, 1075, 1305
Psp1406I AACGTT 1 cut(s) 1618
Psp6I CCWGG 1 cut(s) 971
PspFI CCCAGC 1 cut(s) 883
PspGI CCWGG 1 cut(s) 971
PspN4I GGNNCC 3 cut(s) 181, 1211, 1348
PspPI GGNCC 3 cut(s) 180, 1041, 1209
PsuI RGATCY 1 cut(s) 1252
PvuII CAGCTG 1 cut(s) 883
RsaI GTAC 6 cut(s) 69, 738, 807, 909, 1036, 1223
RsaNI GTAC 6 cut(s) 68, 737, 806, 908, 1035, 1222
RseI CAYNNNNRTG 2 cut(s) 504, 902
SaqAI TTAA 2 cut(s) 860, 1317
SatI GCNGC 5 cut(s) 74, 260, 610, 1074, 1304
Sau3AI GATC 2 cut(s) 1252, 1501
Sau96I GGNCC 3 cut(s) 180, 1041, 1209
ScrFI CCNGG 1 cut(s) 973
SduI GDGCHC 2 cut(s) 1006, 1349
SfaNI GCATC 7 cut(s) 358, 778, 1153, 1251, 1290, 1459, 1621
SinI GGWCC 2 cut(s) 1041, 1209
SmiMI CAYNNNNRTG 2 cut(s) 504, 902
SmlI CTYRAG 2 cut(s) 624, 1508
SmoI CTYRAG 2 cut(s) 624, 1508
SsiI CCGC 4 cut(s) 817, 1258, 1264, 1441
SspI AATATT 2 cut(s) 1286, 1315
SspMI CTAG 1 cut(s) 1445
StyD4I CCNGG 1 cut(s) 971
StyI CCWWGG 1 cut(s) 1044
TaaI ACNGT 3 cut(s) 653, 771, 1661
TaiI ACGT 3 cut(s) 1036, 1072, 1621
TaqI TCGA 5 cut(s) 36, 239, 1000, 1613, 1674
TatI WGTACW 2 cut(s) 67, 736
TfiI GAWTC 3 cut(s) 446, 531, 1546
Tru1I TTAA 2 cut(s) 860, 1317
Tru9I TTAA 2 cut(s) 860, 1317
TscAI CASTG 5 cut(s) 154, 448, 774, 1339, 1424
TseFI GTSAC 2 cut(s) 887, 1655
TseI GCWGC 5 cut(s) 73, 259, 609, 1073, 1303
Tsp45I GTSAC 2 cut(s) 887, 1655
TspRI CASTG 5 cut(s) 154, 448, 774, 1339, 1424
VpaK11BI GGWCC 2 cut(s) 1041, 1209
XapI RAATTY 5 cut(s) 104, 565, 706, 1149, 1605
XspI CTAG 1 cut(s) 1445
Zsp2I ATGCAT 1 cut(s) 1168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.