Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002466

Physical Location & Seq

Genomic Coordinates Forward (+)

34769129 .. 34770631

Gene Structure 1503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g41391.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1503 bp

ATGGAAAGGCCTCACCTGTTCACCACAAGGCCATGTGACTACCCTAAATCTCTGGAATGCTGGCATAGTTGGCAGTTTACACTTCCAACTCTCACAGCCTTGCCGAGTCTTCAAAATCTGTACTTGCAAGGCAATTCTTTCTCTGCTTCTGATCTTTCTGTTTCCAACATTACCTCATGTAGTCTTGTAACAGTTGACTTGTCCTCCAACAACATCACAAGCCCTCTTCCTATTCAGTCTTTTCTTGAGGGTTGTGAGCATCTGGCCTCGGTCAACCTCTCTGGTAATTCCATCCCAGGAGGGAGTTTCCGCTTCGGTGCTTCTTTGCTTCAGCTTGACATCTCTAGAAACCGGATTTCGGATTCGTCCTTGTTGACTTGCCAGAATCTTAATCTGCTCAATGTTTCCGGTAACAAGCTCACCGGAAAGCTGAGTGGTTCTATCTTGTCTTGCAAGAATCTGACAACACTTGACCTTTCATACAATGCTTTGTCAGGGGAGATACCAAACACTTTCCTGGAAAGCGCCTCGGCATCACTCAAGTATTTGGATCTCTCAAGCAACAATTTCACTGGAAAGTTTGCAAGCCTTGGTTTCGGGCAGTGCAGCAGCCTCACTTTGCTGAAACTATCACACAATAATCTCTACGGGGATGAGTTTCCTTCAAGCCTTGCCAACTGTCAAGCTTTGGAGACACTGAACCTGACTAGTAACAAGTTTCAGGACAAGATTCCAGGTGCTCTGTTGGGAAATCTCAAGAAATTGAGGCAACTCTTTCTGGGTCGTAATCAGTTTTCTGGTGTAATTCCAGCTGAATTAGGAAAGGCCTGTGGGACACTCCAGGAGCTTGATATTTCTGATAACATTCTTACTGGTGAATTGCCTTCAAGTTTTGTGTCATGCACTTCTTTGGTTACTCTCAATCTTGGTCGCAATCAGCTATCAGGAAATTTCCTCAATACTGTTGTGAGTAAGCTTCCTAGTTTGAGATATCTGTATGCACCCTTCAACAGCATAACTGGTCCTGTGCCACCCTCTATTACCAATGGTACTCGGCTTCAAGTGCTCGATCTCAGCGCTAATCTCTTCACAGGGAATGTTCCTTCAGGGTTTTGCTCCTCCAATGCTCCCTCAGCTTTGGAAAAGATACTTCTAGCTAACAATTTCCTCTCCGGGACTGTCCCATCAGAACTTGGAAACTGCAAGAACTTAAGAGCTATTGATCTGAGTTTCAACAATTTGAGTGGTGCAATTCCTTCAGAAATTTGGACCTTGCCAAAACTTTCTGACTTGGTTATGTGGGCAAACAAGTTCACTGGTGAAATCCCCGAAGGCATTTGCGTCAATGGAGGAAACCTGGAAACCCTGATTCTCAACAATAATCTCATTTCTGGAGCCATTCCACAGTCCATTGGCAGCTGCACCCATATGATTGACAACGAGAATTTACACAGGGTTGACAGTTTACACATTCACCAGCAATGGAAGCATGATCTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase

Protein Analysis

501

Amino Acids

53.87

Weight (kDa)

6.0

Isoelectric Point (pI)

39.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_4	PF12799	152 - 194	4.9e-06	Leucine Rich repeats (2 copies)
LRR_14	PF23598	222 - 332	3e-07	Leucine-rich repeat region
LRR_8	PF13855	279 - 339	1.1e-07	Leucine rich repeat
LRR_8	PF13855	379 - 437	5.9e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55610 AT1G55610 AT3G13380
fragaria_vesca	FvH4_3g41391 FvH4_3g41392 FvH4_3g41420
malus_domestica	MD03G1044500.v1.1 MD11G1047400.v1.1
prunus_persica	Prupe.6G036400_v2.0.a1
pyrus_communis	pycom03g03440 pycom11g03840
rosa_chinensis	RchiOBHm_Chr5g0074361 RchiOBHm_Chr5g0074371 RchiOBHm_Chr5g0074401
rosa_laevigata	RLG00000036471 RLG00000036472
rosa_multiflora	Rmu_sc0000573.1_g000010 Rmu_sc0000573.1_g000018 Rmu_sc0004706.1_g000021 Rmu_sc0027008.1_g000001 Rmu_sc0027009.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007140 Rroxscaffold_1G00007150
rosa_rugosa	Rorug05G0430600 Rorug05G0430700 Rorug05G0430800 Rorug05G0430800
rosa_samantha	Rh5AG488300 Rh5AG488500 Rh5BG509000 Rh5BG509100 Rh5BG509300 Rh5CG532900 Rh5CG533000 Rh5CG533100 Rh5DG521600 Rh5DG521700 Rh5DG521800 Rh5DG522000
rosa_wichuraiana	Rw5G045290 Rw5G045300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	310
AclWI	GGATC	1 cut(s)	558
AcsI	RAATTY	3 cut(s)	949, 1263, 1444
AcuI	CTGAAG	3 cut(s)	314, 1089, 1242
AfaI	GTAC	2 cut(s)	122, 1051
AfeI	AGCGCT	1 cut(s)	1078
AfiI	CCNNNNNNNGG	1 cut(s)	358
AflII	CTTAAG	1 cut(s)	1210
AgsI	TTSAA	6 cut(s)	113, 666, 888, 1009, 1061, 1234
AhlI	ACTAGT	1 cut(s)	707
AjnI	CCWGG	5 cut(s)	295, 516, 733, 840, 1356
Alw21I	GWGCWC	2 cut(s)	742, 1068
Alw26I	GTCTC	1 cut(s)	686
AlwI	GGATC	1 cut(s)	558
Aor51HI	AGCGCT	1 cut(s)	1078
AoxI	GGCC	4 cut(s)	8, 29, 264, 825
ApeKI	GCWGC	4 cut(s)	606, 609, 1416, 1419
ApoI	RAATTY	3 cut(s)	949, 1263, 1444
AspLEI	GCGC	2 cut(s)	527, 1079
AspS9I	GGNCC	2 cut(s)	1022, 1269
AsuC2I	CCSGG	1 cut(s)	1174
AsuHPI	GGTGA	6 cut(s)	5, 13, 412, 887, 1331, 1466
AvaII	GGWCC	2 cut(s)	1022, 1269
BarI	GAAGNNNNNNTAC	2 cut(s)	989, 1021
BbsI	GAAGAC	1 cut(s)	101
Bbv12I	GWGCWC	2 cut(s)	742, 1068
BbvCI	CCTCAGC	1 cut(s)	1132
BbvI	GCAGC	4 cut(s)	618, 621, 1406, 1428
BccI	CCATC	2 cut(s)	299, 1192
BciT130I	CCWGG	5 cut(s)	297, 518, 735, 842, 1358
BcnI	CCSGG	1 cut(s)	1174
BcoDI	GTCTC	1 cut(s)	686
BcuI	ACTAGT	1 cut(s)	707
BfaI	CTAG	4 cut(s)	345, 708, 981, 1154
BfoI	RGCGCY	2 cut(s)	528, 1080
BfrI	CTTAAG	1 cut(s)	1210
BisI	GCNGC	4 cut(s)	607, 610, 1417, 1420
BlsI	GCNGC	4 cut(s)	608, 611, 1418, 1421
Bme1390I	CCNGG	6 cut(s)	297, 518, 735, 842, 1174, 1358
Bme18I	GGWCC	2 cut(s)	1022, 1269
BmgT120I	GGNCC	2 cut(s)	1022, 1269
BmiI	GGNNCC	1 cut(s)	1396
BmrFI	CCNGG	6 cut(s)	297, 518, 735, 842, 1174, 1358
BmsI	GCATC	2 cut(s)	268, 542
BpiI	GAAGAC	1 cut(s)	101
BpmI	CTGGAG	2 cut(s)	824, 1413
Bpu10I	CCTNAGC	1 cut(s)	1132
BpuEI	CTTGAG	4 cut(s)	266, 524, 541, 740
BpuMI	CCSGG	1 cut(s)	1174
BsaJI	CCNNGG	4 cut(s)	267, 295, 528, 589
BsaWI	WCCGGW	3 cut(s)	351, 407, 422
BsaXI	ACNNNNNCTCC	2 cut(s)	188, 218
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
Bse1I	ACTGG	4 cut(s)	577, 877, 1024, 1321
Bse3DI	GCAATG	1 cut(s)	1487
BseBI	CCWGG	5 cut(s)	297, 518, 735, 842, 1358
BseDI	CCNNGG	4 cut(s)	267, 295, 528, 589
BseGI	GGATG	2 cut(s)	291, 658
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMI	GCAATG	1 cut(s)	1487
BseMII	CTCAG	4 cut(s)	422, 1087, 1146, 1217
BseNI	ACTGG	4 cut(s)	577, 877, 1024, 1321
BseRI	GAGGAG	1 cut(s)	1108
BseXI	GCAGC	4 cut(s)	618, 621, 1406, 1428
BsgI	GTGCAG	2 cut(s)	625, 1405
BshFI	GGCC	4 cut(s)	10, 31, 266, 827
BsiHKAI	GWGCWC	2 cut(s)	742, 1068
BsiSI	CCGG	4 cut(s)	352, 408, 423, 1173
BslFI	GGGAC	3 cut(s)	847, 1166, 1189
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmAI	GTCTC	1 cut(s)	686
BsmFI	GGGAC	3 cut(s)	847, 1166, 1189
BsmI	GAATGC	1 cut(s)	62
BsnI	GGCC	4 cut(s)	10, 31, 266, 827
Bsp1286I	GDGCHC	2 cut(s)	742, 1068
Bsp143I	GATC	5 cut(s)	151, 550, 1069, 1222, 1492
BspACI	CCGC	1 cut(s)	310
BspANI	GGCC	4 cut(s)	10, 31, 266, 827
BspCNI	CTCAG	4 cut(s)	423, 1086, 1145, 1218
BspLI	GGNNCC	1 cut(s)	1396
BspPI	GGATC	1 cut(s)	558
BspTI	CTTAAG	1 cut(s)	1210
BsrDI	GCAATG	1 cut(s)	1487
BsrI	ACTGG	4 cut(s)	577, 877, 1024, 1321
BssECI	CCNNGG	4 cut(s)	267, 295, 528, 589
BssMI	GATC	5 cut(s)	151, 550, 1069, 1222, 1492
BssT1I	CCWWGG	1 cut(s)	589
Bst2UI	CCWGG	5 cut(s)	297, 518, 735, 842, 1358
Bst4CI	ACNGT	6 cut(s)	193, 680, 964, 1180, 1407, 1463
Bst6I	CTCTTC	2 cut(s)	231, 1091
BstAFI	CTTAAG	1 cut(s)	1210
BstC8I	GCNNGC	2 cut(s)	62, 586
BstDEI	CTNAG	4 cut(s)	431, 1073, 1132, 1226
BstF5I	GGATG	2 cut(s)	291, 658
BstH2I	RGCGCY	2 cut(s)	528, 1080
BstHHI	GCGC	2 cut(s)	527, 1079
BstKTI	GATC	5 cut(s)	154, 553, 1072, 1225, 1495
BstMAI	GTCTC	1 cut(s)	686
BstMBI	GATC	5 cut(s)	151, 550, 1069, 1222, 1492
BstMWI	GCNNNNNNNGC	4 cut(s)	70, 1063, 1133, 1486
BstNI	CCWGG	5 cut(s)	297, 518, 735, 842, 1358
BstSCI	CCNGG	6 cut(s)	295, 516, 733, 840, 1172, 1356
BstV1I	GCAGC	4 cut(s)	618, 621, 1406, 1428
BstV2I	GAAGAC	1 cut(s)	101
BstX2I	RGATCY	1 cut(s)	550
BstYI	RGATCY	1 cut(s)	550
BsuRI	GGCC	4 cut(s)	10, 31, 266, 827
BtsCI	GGATG	2 cut(s)	291, 658
BtsI	GCAGTG	1 cut(s)	608
BtsIMutI	CAGTG	4 cut(s)	570, 608, 695, 1314
Cac8I	GCNNGC	2 cut(s)	62, 586
CfoI	GCGC	2 cut(s)	527, 1079
Cfr13I	GGNCC	2 cut(s)	1022, 1269
CseI	GACGC	1 cut(s)	1330
Csp6I	GTAC	2 cut(s)	121, 1050
CspCI	CAANNNNNGTGG	2 cut(s)	1225, 1260
CviAII	CATG	4 cut(s)	33, 177, 900, 1490
CviQI	GTAC	2 cut(s)	121, 1050
DdeI	CTNAG	4 cut(s)	431, 1073, 1132, 1226
DpnI	GATC	5 cut(s)	153, 552, 1071, 1224, 1494
DpnII	GATC	5 cut(s)	151, 550, 1069, 1222, 1492
Eam1104I	CTCTTC	2 cut(s)	231, 1091
EarI	CTCTTC	2 cut(s)	231, 1091
Eco130I	CCWWGG	1 cut(s)	589
Eco147I	AGGCCT	2 cut(s)	10, 827
Eco32I	GATATC	1 cut(s)	992
Eco47I	GGWCC	2 cut(s)	1022, 1269
Eco47III	AGCGCT	1 cut(s)	1078
Eco57I	CTGAAG	3 cut(s)	314, 1089, 1242
EcoRII	CCWGG	5 cut(s)	295, 516, 733, 840, 1356
EcoRV	GATATC	1 cut(s)	992
EcoT14I	CCWWGG	1 cut(s)	589
ErhI	CCWWGG	1 cut(s)	589
FaeI	CATG	4 cut(s)	36, 180, 903, 1493
FaqI	GGGAC	3 cut(s)	847, 1166, 1189
FatI	CATG	4 cut(s)	32, 176, 899, 1489
FauNDI	CATATG	1 cut(s)	1428
Fnu4HI	GCNGC	4 cut(s)	607, 610, 1417, 1420
FokI	GGATG	2 cut(s)	278, 665
Fsp4HI	GCNGC	4 cut(s)	607, 610, 1417, 1420
FspBI	CTAG	4 cut(s)	345, 708, 981, 1154
GlaI	GCGC	2 cut(s)	526, 1078
GluI	GCNGC	4 cut(s)	607, 610, 1417, 1420
GsuI	CTGGAG	2 cut(s)	824, 1413
HaeII	RGCGCY	2 cut(s)	528, 1080
HaeIII	GGCC	4 cut(s)	10, 31, 266, 827
HapII	CCGG	4 cut(s)	352, 408, 423, 1173
HgaI	GACGC	1 cut(s)	1330
HhaI	GCGC	2 cut(s)	527, 1079
Hin1II	CATG	4 cut(s)	36, 180, 903, 1493
Hin6I	GCGC	2 cut(s)	525, 1077
HinP1I	GCGC	2 cut(s)	525, 1077
HincII	GTYRAC	4 cut(s)	196, 274, 375, 1459
HindII	GTYRAC	4 cut(s)	196, 274, 375, 1459
HindIII	AAGCTT	2 cut(s)	684, 974
HinfI	GANTC	6 cut(s)	106, 362, 385, 457, 730, 1369
HpaII	CCGG	4 cut(s)	352, 408, 423, 1173
HphI	GGTGA	6 cut(s)	5, 13, 412, 887, 1331, 1466
Hpy166II	GTNNAC	8 cut(s)	21, 78, 196, 274, 375, 1314, 1459, 1466
Hpy188I	TCNGA	8 cut(s)	151, 361, 462, 859, 1189, 1227, 1261, 1288
Hpy188III	TCNNGA	7 cut(s)	53, 245, 345, 722, 757, 945, 1392
Hpy8I	GTNNAC	8 cut(s)	21, 78, 196, 274, 375, 1314, 1459, 1466
HpyAV	CCTTC	6 cut(s)	672, 894, 1015, 1113, 1266, 1325
HpyCH4III	ACNGT	6 cut(s)	193, 680, 964, 1180, 1407, 1463
HpyCH4V	TGCA	9 cut(s)	127, 453, 584, 606, 903, 1001, 1203, 1250, 1422
HpyF10VI	GCNNNNNNNGC	4 cut(s)	70, 1063, 1133, 1486
HpyF3I	CTNAG	4 cut(s)	431, 1073, 1132, 1226
Hsp92II	CATG	4 cut(s)	36, 180, 903, 1493
HspAI	GCGC	2 cut(s)	525, 1077
Kzo9I	GATC	5 cut(s)	151, 550, 1069, 1222, 1492
LmnI	GCTCC	4 cut(s)	844, 1121, 1132, 1394
Lsp1109I	GCAGC	4 cut(s)	618, 621, 1406, 1428
LweI	GCATC	2 cut(s)	268, 542
MaeI	CTAG	4 cut(s)	345, 708, 981, 1154
MaeIII	GTNAC	5 cut(s)	35, 187, 410, 710, 913
MalI	GATC	5 cut(s)	153, 552, 1071, 1224, 1494
MboI	GATC	5 cut(s)	151, 550, 1069, 1222, 1492
MboII	GAAGA	4 cut(s)	101, 218, 1078, 1487
MflI	RGATCY	1 cut(s)	550
MhlI	GDGCHC	2 cut(s)	742, 1068
MlyI	GAGTC	1 cut(s)	115
MmeI	TCCRAC	3 cut(s)	110, 189, 231
MseI	TTAA	2 cut(s)	390, 1211
MslI	CAYNNNNRTG	1 cut(s)	1427
MspA1I	CMGCKG	2 cut(s)	812, 1419
MspCI	CTTAAG	1 cut(s)	1210
MspI	CCGG	4 cut(s)	352, 408, 423, 1173
MspR9I	CCNGG	6 cut(s)	297, 518, 735, 842, 1174, 1358
Mva1269I	GAATGC	1 cut(s)	62
MvaI	CCWGG	5 cut(s)	297, 518, 735, 842, 1358
MwoI	GCNNNNNNNGC	4 cut(s)	70, 1063, 1133, 1486
NciI	CCSGG	1 cut(s)	1174
NdeI	CATATG	1 cut(s)	1428
NdeII	GATC	5 cut(s)	151, 550, 1069, 1222, 1492
NlaIII	CATG	4 cut(s)	36, 180, 903, 1493
NlaIV	GGNNCC	1 cut(s)	1396
NmeAIII	GCCGAG	3 cut(s)	129, 509, 1033
NmuCI	GTSAC	1 cut(s)	35
PceI	AGGCCT	2 cut(s)	10, 827
PctI	GAATGC	1 cut(s)	62
PfeI	GAWTC	5 cut(s)	362, 385, 457, 730, 1369
PfoI	TCCNGGA	3 cut(s)	516, 840, 1172
PkrI	GCNGC	4 cut(s)	608, 611, 1418, 1421
PleI	GAGTC	1 cut(s)	114
PpsI	GAGTC	1 cut(s)	114
Psp6I	CCWGG	5 cut(s)	295, 516, 733, 840, 1356
PspGI	CCWGG	5 cut(s)	295, 516, 733, 840, 1356
PspN4I	GGNNCC	1 cut(s)	1396
PspPI	GGNCC	2 cut(s)	1022, 1269
PsuI	RGATCY	1 cut(s)	550
PvuII	CAGCTG	2 cut(s)	812, 1419
RsaI	GTAC	2 cut(s)	122, 1051
RsaNI	GTAC	2 cut(s)	121, 1050
RseI	CAYNNNNRTG	1 cut(s)	1427
SaqAI	TTAA	2 cut(s)	390, 1211
SatI	GCNGC	4 cut(s)	607, 610, 1417, 1420
Sau3AI	GATC	5 cut(s)	151, 550, 1069, 1222, 1492
Sau96I	GGNCC	2 cut(s)	1022, 1269
SchI	GAGTC	1 cut(s)	115
ScrFI	CCNGG	6 cut(s)	297, 518, 735, 842, 1174, 1358
SduI	GDGCHC	2 cut(s)	742, 1068
SfaNI	GCATC	2 cut(s)	268, 542
SinI	GGWCC	2 cut(s)	1022, 1269
SmiMI	CAYNNNNRTG	1 cut(s)	1427
SmlI	CTYRAG	5 cut(s)	245, 539, 556, 755, 1210
SmoI	CTYRAG	5 cut(s)	245, 539, 556, 755, 1210
SpeI	ACTAGT	1 cut(s)	707
SseBI	AGGCCT	2 cut(s)	10, 827
SsiI	CCGC	1 cut(s)	310
SspMI	CTAG	4 cut(s)	345, 708, 981, 1154
StuI	AGGCCT	2 cut(s)	10, 827
StyD4I	CCNGG	6 cut(s)	295, 516, 733, 840, 1172, 1356
StyI	CCWWGG	1 cut(s)	589
TaaI	ACNGT	6 cut(s)	193, 680, 964, 1180, 1407, 1463
TaqI	TCGA	1 cut(s)	1068
TaqII	GACCGA	1 cut(s)	259
TatI	WGTACW	1 cut(s)	120
TfiI	GAWTC	5 cut(s)	362, 385, 457, 730, 1369
Tru1I	TTAA	2 cut(s)	390, 1211
Tru9I	TTAA	2 cut(s)	390, 1211
TscAI	CASTG	4 cut(s)	577, 608, 702, 1321
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	4 cut(s)	606, 609, 1416, 1419
Tsp45I	GTSAC	1 cut(s)	35
TspDTI	ATGAA	1 cut(s)	468
TspRI	CASTG	4 cut(s)	577, 608, 702, 1321
Vha464I	CTTAAG	1 cut(s)	1210
VpaK11BI	GGWCC	2 cut(s)	1022, 1269
XapI	RAATTY	3 cut(s)	949, 1263, 1444
XbaI	TCTAGA	1 cut(s)	344
XspI	CTAG	4 cut(s)	345, 708, 981, 1154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.