Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002466

Physical Location & Seq

Genomic Coordinates Forward (+)

80292380 .. 80293176

Gene Structure 797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34918

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGTGGGCAAACAATCTCACTGGTGAAATCCCGGAAGGCATTTGCATCAATGGAGGAAAACTGGAAACCCTGATTCTCAACAATAATCTCATTACTGGAGCCATTCCACAGTCCATTGGCAGATGCACCAATATGATTTGGGTGTCACTATCTAGCAACCGGCTTACAGGAGCAATCCCTTCAGGTATTGGAAATCTCCTTAAGCTTGCTATACTTCAGTTGGGTAATAATTCACTGTCTGGTCAGATTCCAGCTGAGCTTGGCAAGTGTCAAAGCCTCATTTGGCTTGACCTGAACAGCAATGACCTAAATGGTTCTATCCCATCAGAGCTTGCTAACCAGGCCAACCTAGTCATTCCTGGAACAGTTTCTGGGAAGCAGTTTGCATTTGTTAGAAATGAGGGTGGTACAGCTTGCAGGGGTGCAGGAGGACTAGTTGAGTTTGAGGGAGTCCGACCTCAGAGACTAGAAAGTTTACCTATGGTTCATTCTTGTCCATCATCTAGAATTTACACAGGAATGACAGTTTACACATTCACCAGCAATGGAAGCATGATCTTCCTTGACATTTCCTACAATCACTTGTCTGGGACTATTCCCGCAAACTTAGGTGCACTGTCCTATTTGCAAGTCTTCAATCTAGCACACAATATGTTAAGTGGAAATATTCCAGAAAGCTTTAGAGGACTAAAAGCAATTGGAGATCTTTGGGGACTCTCTCTTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase

Protein Analysis

242

Amino Acids

25.68

Weight (kDa)

6.28

Isoelectric Point (pI)

28.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	47 - 103	1.9e-06	Leucine rich repeat
Island	PF20141	117 - 180	4.5e-31	Brassinosteroid receptor island domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55610 AT1G55610 AT3G13380
fragaria_vesca	FvH4_3g41391 FvH4_3g41392 FvH4_3g41420
malus_domestica	MD03G1044500.v1.1 MD11G1047400.v1.1
prunus_persica	Prupe.6G036400_v2.0.a1
pyrus_communis	pycom03g03440 pycom11g03840
rosa_chinensis	RchiOBHm_Chr5g0074361 RchiOBHm_Chr5g0074371 RchiOBHm_Chr5g0074401
rosa_laevigata	RLG00000036471 RLG00000036472
rosa_multiflora	Rmu_sc0000573.1_g000010 Rmu_sc0000573.1_g000018 Rmu_sc0004706.1_g000021 Rmu_sc0027008.1_g000001 Rmu_sc0027009.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007140 Rroxscaffold_1G00007150
rosa_rugosa	Rorug05G0430600 Rorug05G0430700 Rorug05G0430800 Rorug05G0430800
rosa_samantha	Rh5AG488300 Rh5AG488500 Rh5BG509000 Rh5BG509100 Rh5BG509300 Rh5CG532900 Rh5CG533000 Rh5CG533100 Rh5DG521600 Rh5DG521700 Rh5DG521800 Rh5DG522000
rosa_wichuraiana	Rw5G045290 Rw5G045300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	600
AcsI	RAATTY	1 cut(s)	507
AcuI	CTGAAG	2 cut(s)	165, 200
AfaI	GTAC	1 cut(s)	409
AflII	CTTAAG	1 cut(s)	200
AgsI	TTSAA	1 cut(s)	637
AhlI	ACTAGT	1 cut(s)	433
AjnI	CCWGG	2 cut(s)	339, 358
AluBI	AGCT	6 cut(s)	205, 254, 259, 331, 413, 678
AluI	AGCT	6 cut(s)	205, 254, 259, 331, 413, 678
Alw21I	GWGCWC	1 cut(s)	616
Alw26I	GTCTC	1 cut(s)	457
Alw44I	GTGCAC	1 cut(s)	612
AlwNI	CAGNNNCTG	1 cut(s)	371
AoxI	GGCC	1 cut(s)	342
ApaLI	GTGCAC	1 cut(s)	612
ApoI	RAATTY	1 cut(s)	507
Asp700I	GAANNNNTTC	1 cut(s)	367
AsuC2I	CCSGG	1 cut(s)	32
AsuHPI	GGTGA	2 cut(s)	35, 529
BaeGI	GKGCMC	1 cut(s)	616
BbsI	GAAGAC	1 cut(s)	625
Bbv12I	GWGCWC	1 cut(s)	616
BccI	CCATC	2 cut(s)	331, 505
BciT130I	CCWGG	2 cut(s)	341, 360
BcnI	CCSGG	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	457
BcuI	ACTAGT	1 cut(s)	433
BfaI	CTAG	6 cut(s)	153, 350, 434, 467, 504, 641
BfrI	CTTAAG	1 cut(s)	200
BglII	AGATCT	1 cut(s)	703
BlpI	GCTNAGC	1 cut(s)	255
Bme1390I	CCNGG	3 cut(s)	32, 341, 360
BmiI	GGNNCC	1 cut(s)	100
BmrFI	CCNGG	3 cut(s)	32, 341, 360
BmsI	GCATC	2 cut(s)	54, 113
BpiI	GAAGAC	1 cut(s)	625
BpmI	CTGGAG	1 cut(s)	117
Bpu1102I	GCTNAGC	1 cut(s)	255
BpuMI	CCSGG	1 cut(s)	32
BsaXI	ACNNNNNCTCC	2 cut(s)	420, 450
Bse118I	RCCGGY	1 cut(s)	159
Bse1I	ACTGG	3 cut(s)	25, 66, 100
Bse3DI	GCAATG	2 cut(s)	307, 550
BseBI	CCWGG	2 cut(s)	341, 360
BseMI	GCAATG	2 cut(s)	307, 550
BseMII	CTCAG	2 cut(s)	246, 473
BseNI	ACTGG	3 cut(s)	25, 66, 100
BseSI	GKGCMC	1 cut(s)	616
BsgI	GTGCAG	1 cut(s)	444
BshFI	GGCC	1 cut(s)	344
BsiHKAI	GWGCWC	1 cut(s)	616
BsiSI	CCGG	2 cut(s)	32, 160
BslFI	GGGAC	1 cut(s)	604
BsmAI	GTCTC	1 cut(s)	457
BsmFI	GGGAC	1 cut(s)	604
BsnI	GGCC	1 cut(s)	344
Bsp1286I	GDGCHC	1 cut(s)	616
Bsp143I	GATC	2 cut(s)	555, 703
Bsp1720I	GCTNAGC	1 cut(s)	255
BspACI	CCGC	1 cut(s)	600
BspANI	GGCC	1 cut(s)	344
BspCNI	CTCAG	2 cut(s)	247, 472
BspLI	GGNNCC	1 cut(s)	100
BspTI	CTTAAG	1 cut(s)	200
BsrDI	GCAATG	2 cut(s)	307, 550
BsrFI	RCCGGY	1 cut(s)	159
BsrI	ACTGG	3 cut(s)	25, 66, 100
BssAI	RCCGGY	1 cut(s)	159
BssMI	GATC	2 cut(s)	555, 703
Bst2UI	CCWGG	2 cut(s)	341, 360
Bst4CI	ACNGT	5 cut(s)	111, 237, 367, 526, 618
BstAFI	CTTAAG	1 cut(s)	200
BstC8I	GCNNGC	3 cut(s)	207, 333, 415
BstDEI	CTNAG	3 cut(s)	255, 459, 607
BstKTI	GATC	2 cut(s)	558, 706
BstMAI	GTCTC	1 cut(s)	457
BstMBI	GATC	2 cut(s)	555, 703
BstMWI	GCNNNNNNNGC	2 cut(s)	341, 549
BstNI	CCWGG	2 cut(s)	341, 360
BstSCI	CCNGG	3 cut(s)	30, 339, 358
BstSLI	GKGCMC	1 cut(s)	616
BstV2I	GAAGAC	1 cut(s)	625
BstX2I	RGATCY	1 cut(s)	703
BstYI	RGATCY	1 cut(s)	703
BsuRI	GGCC	1 cut(s)	344
BtsIMutI	CAGTG	3 cut(s)	18, 233, 614
Cac8I	GCNNGC	3 cut(s)	207, 333, 415
CaiI	CAGNNNCTG	1 cut(s)	371
Cfr10I	RCCGGY	1 cut(s)	159
Csp6I	GTAC	1 cut(s)	408
CviAII	CATG	1 cut(s)	553
CviQI	GTAC	1 cut(s)	408
DdeI	CTNAG	3 cut(s)	255, 459, 607
DpnI	GATC	2 cut(s)	557, 705
DpnII	GATC	2 cut(s)	555, 703
Eco57I	CTGAAG	2 cut(s)	165, 200
EcoRII	CCWGG	2 cut(s)	339, 358
FaeI	CATG	1 cut(s)	556
FaiI	YATR	5 cut(s)	134, 212, 482, 554, 653
FaqI	GGGAC	1 cut(s)	604
FatI	CATG	1 cut(s)	552
FauI	CCCGC	1 cut(s)	607
FspBI	CTAG	6 cut(s)	153, 350, 434, 467, 504, 641
GsuI	CTGGAG	1 cut(s)	117
HaeIII	GGCC	1 cut(s)	344
HapII	CCGG	2 cut(s)	32, 160
Hin1II	CATG	1 cut(s)	556
HindIII	AAGCTT	2 cut(s)	203, 676
HinfI	GANTC	4 cut(s)	73, 247, 450, 714
HpaII	CCGG	2 cut(s)	32, 160
HphI	GGTGA	2 cut(s)	35, 529
Hpy166II	GTNNAC	3 cut(s)	476, 529, 614
Hpy188I	TCNGA	4 cut(s)	246, 328, 455, 462
Hpy188III	TCNNGA	3 cut(s)	504, 671, 726
Hpy8I	GTNNAC	3 cut(s)	476, 529, 614
HpyAV	CCTTC	2 cut(s)	29, 189
HpyCH4III	ACNGT	5 cut(s)	111, 237, 367, 526, 618
HpyCH4V	TGCA	7 cut(s)	45, 126, 386, 417, 425, 614, 628
HpyF10VI	GCNNNNNNNGC	2 cut(s)	341, 549
HpyF3I	CTNAG	3 cut(s)	255, 459, 607
Hsp92II	CATG	1 cut(s)	556
Kzo9I	GATC	2 cut(s)	555, 703
LmnI	GCTCC	2 cut(s)	98, 170
LweI	GCATC	2 cut(s)	54, 113
MaeI	CTAG	6 cut(s)	153, 350, 434, 467, 504, 641
MaeIII	GTNAC	1 cut(s)	144
MalI	GATC	2 cut(s)	557, 705
MboI	GATC	2 cut(s)	555, 703
MboII	GAAGA	2 cut(s)	550, 625
MfeI	CAATTG	1 cut(s)	696
MflI	RGATCY	1 cut(s)	703
MhlI	GDGCHC	1 cut(s)	616
MluCI	AATT	3 cut(s)	229, 507, 696
MlyI	GAGTC	2 cut(s)	459, 708
MmeI	TCCRAC	1 cut(s)	478
MnlI	CCTC	7 cut(s)	47, 287, 394, 422, 439, 468, 677
MroXI	GAANNNNTTC	1 cut(s)	367
MseI	TTAA	2 cut(s)	201, 656
MslI	CAYNNNNRTG	2 cut(s)	131, 518
MspA1I	CMGCKG	1 cut(s)	254
MspCI	CTTAAG	1 cut(s)	200
MspI	CCGG	2 cut(s)	32, 160
MspR9I	CCNGG	3 cut(s)	32, 341, 360
MunI	CAATTG	1 cut(s)	696
MvaI	CCWGG	2 cut(s)	341, 360
MwoI	GCNNNNNNNGC	2 cut(s)	341, 549
NciI	CCSGG	1 cut(s)	32
NdeII	GATC	2 cut(s)	555, 703
NlaIII	CATG	1 cut(s)	556
NlaIV	GGNNCC	1 cut(s)	100
NmuCI	GTSAC	1 cut(s)	144
PdmI	GAANNNNTTC	1 cut(s)	367
PfeI	GAWTC	2 cut(s)	73, 247
PfoI	TCCNGGA	2 cut(s)	30, 358
PleI	GAGTC	2 cut(s)	458, 708
PpsI	GAGTC	2 cut(s)	458, 708
Psp6I	CCWGG	2 cut(s)	339, 358
PspGI	CCWGG	2 cut(s)	339, 358
PspN4I	GGNNCC	1 cut(s)	100
PstNI	CAGNNNCTG	1 cut(s)	371
PsuI	RGATCY	1 cut(s)	703
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
RseI	CAYNNNNRTG	2 cut(s)	131, 518
SaqAI	TTAA	2 cut(s)	201, 656
Sau3AI	GATC	2 cut(s)	555, 703
SchI	GAGTC	2 cut(s)	459, 708
ScrFI	CCNGG	3 cut(s)	32, 341, 360
SduI	GDGCHC	1 cut(s)	616
SfaNI	GCATC	2 cut(s)	54, 113
SmiMI	CAYNNNNRTG	2 cut(s)	131, 518
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
SpeI	ACTAGT	1 cut(s)	433
Sse9I	AATT	3 cut(s)	229, 507, 696
SsiI	CCGC	1 cut(s)	600
SspI	AATATT	1 cut(s)	667
SspMI	CTAG	6 cut(s)	153, 350, 434, 467, 504, 641
StyD4I	CCNGG	3 cut(s)	30, 339, 358
TaaI	ACNGT	5 cut(s)	111, 237, 367, 526, 618
TasI	AATT	3 cut(s)	229, 507, 696
TfiI	GAWTC	2 cut(s)	73, 247
Tru1I	TTAA	2 cut(s)	201, 656
Tru9I	TTAA	2 cut(s)	201, 656
TscAI	CASTG	3 cut(s)	25, 240, 621
TseFI	GTSAC	1 cut(s)	144
Tsp45I	GTSAC	1 cut(s)	144
TspDTI	ATGAA	1 cut(s)	476
TspRI	CASTG	3 cut(s)	25, 240, 621
Vha464I	CTTAAG	1 cut(s)	200
VneI	GTGCAC	1 cut(s)	612
XapI	RAATTY	1 cut(s)	507
XbaI	TCTAGA	1 cut(s)	503
XmnI	GAANNNNTTC	1 cut(s)	367
XspI	CTAG	6 cut(s)	153, 350, 434, 467, 504, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.