Rh5DG521700
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0002466
Physical Location & Seq
Forward (+)
80964873 .. 80965313
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG521700.1

Sequence Viewer

Length: 441 bp
ATGTGGGCAAACAATCTCACTGGTGAAATCCCGGAAGGCATTTGCATCAATGGAGGAAACCTGGAAACCCTGATTCTCAACAATAATCTCATTACTGGAGCCATTCCACAGTCAATTGGCAGATGCACCAATATGATTTGGGTGTCACTATGTAGCAACCGGCTTACAGGAGCAATCCCTTCAGGTATTGGAAATCTTCTTAAGCTTGCTATACTCCAGTTGGGTAATAATTCACTGTCTGGTCAGATTCCAGCTGAGCTTGGCAAGTGTCAAAGCCTCATTTGGCTTGACCTGAACAGCAATGACCTAAATGGTTCTATCCCATCAGAGCTTGCTAACCAGGCCGGCCTAGTCAATCCTGGAATAGTTTCTGGGAAGCAGTTTGCATTTGTTAGAAATGAGCGAGGGTGGTACAGCTTGCAGGGGGTGCAGGAGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase

Protein Analysis

146

Amino Acids

15.53

Weight (kDa)

4.79

Isoelectric Point (pI)

24.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 47 - 103 2.3e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 165
AfaI GTAC 1 cut(s) 413
AflII CTTAAG 1 cut(s) 200
AjnI CCWGG 3 cut(s) 60, 339, 358
AluBI AGCT 5 cut(s) 205, 254, 259, 331, 417
AluI AGCT 5 cut(s) 205, 254, 259, 331, 417
AoxI GGCC 2 cut(s) 342, 346
Asp700I GAANNNNTTC 1 cut(s) 367
AsuC2I CCSGG 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 35
BccI CCATC 1 cut(s) 331
BciT130I CCWGG 3 cut(s) 62, 341, 360
BcnI CCSGG 1 cut(s) 32
BfaI CTAG 2 cut(s) 350, 439
BfrI CTTAAG 1 cut(s) 200
BlpI GCTNAGC 1 cut(s) 255
Bme1390I CCNGG 4 cut(s) 32, 62, 341, 360
BmiI GGNNCC 1 cut(s) 100
BmrFI CCNGG 4 cut(s) 32, 62, 341, 360
BmsI GCATC 2 cut(s) 54, 113
BpmI CTGGAG 2 cut(s) 117, 200
Bpu1102I GCTNAGC 1 cut(s) 255
BpuMI CCSGG 1 cut(s) 32
Bse118I RCCGGY 2 cut(s) 159, 344
Bse1I ACTGG 3 cut(s) 25, 100, 217
Bse3DI GCAATG 1 cut(s) 307
BseBI CCWGG 3 cut(s) 62, 341, 360
BseMI GCAATG 1 cut(s) 307
BseMII CTCAG 1 cut(s) 246
BseNI ACTGG 3 cut(s) 25, 100, 217
BshFI GGCC 2 cut(s) 344, 348
BsiSI CCGG 3 cut(s) 32, 160, 345
BsnI GGCC 2 cut(s) 344, 348
Bsp1720I GCTNAGC 1 cut(s) 255
BspANI GGCC 2 cut(s) 344, 348
BspCNI CTCAG 1 cut(s) 247
BspLI GGNNCC 1 cut(s) 100
BspTI CTTAAG 1 cut(s) 200
BsrDI GCAATG 1 cut(s) 307
BsrFI RCCGGY 2 cut(s) 159, 344
BsrI ACTGG 3 cut(s) 25, 100, 217
BssAI RCCGGY 2 cut(s) 159, 344
Bst2UI CCWGG 3 cut(s) 62, 341, 360
Bst4CI ACNGT 2 cut(s) 111, 237
BstAFI CTTAAG 1 cut(s) 200
BstAPI GCANNNNNTGC 1 cut(s) 427
BstC8I GCNNGC 4 cut(s) 207, 333, 346, 419
BstDEI CTNAG 1 cut(s) 255
BstMWI GCNNNNNNNGC 2 cut(s) 341, 427
BstNI CCWGG 3 cut(s) 62, 341, 360
BstSCI CCNGG 4 cut(s) 30, 60, 339, 358
BsuRI GGCC 2 cut(s) 344, 348
BtsIMutI CAGTG 2 cut(s) 18, 233
Cac8I GCNNGC 4 cut(s) 207, 333, 346, 419
Cfr10I RCCGGY 2 cut(s) 159, 344
Csp6I GTAC 1 cut(s) 412
CviQI GTAC 1 cut(s) 412
DdeI CTNAG 1 cut(s) 255
Eco57I CTGAAG 1 cut(s) 165
EcoRII CCWGG 3 cut(s) 60, 339, 358
FaiI YATR 3 cut(s) 134, 151, 212
FseI GGCCGGCC 1 cut(s) 348
FspBI CTAG 2 cut(s) 350, 439
GsuI CTGGAG 2 cut(s) 117, 200
HaeIII GGCC 2 cut(s) 344, 348
HapII CCGG 3 cut(s) 32, 160, 345
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 2 cut(s) 73, 247
HpaII CCGG 3 cut(s) 32, 160, 345
HphI GGTGA 1 cut(s) 35
Hpy188I TCNGA 2 cut(s) 246, 328
HpyAV CCTTC 2 cut(s) 29, 189
HpyCH4III ACNGT 2 cut(s) 111, 237
HpyCH4V TGCA 5 cut(s) 45, 126, 386, 421, 430
HpyF10VI GCNNNNNNNGC 2 cut(s) 341, 427
HpyF3I CTNAG 1 cut(s) 255
KroI GCCGGC 1 cut(s) 344
KroNI GCCGGC 1 cut(s) 346
LmnI GCTCC 2 cut(s) 98, 170
LweI GCATC 2 cut(s) 54, 113
MaeI CTAG 2 cut(s) 350, 439
MaeIII GTNAC 1 cut(s) 144
MboII GAAGA 1 cut(s) 188
MfeI CAATTG 1 cut(s) 114
MluCI AATT 2 cut(s) 114, 229
MnlI CCTC 4 cut(s) 47, 287, 398, 427
MroNI GCCGGC 1 cut(s) 344
MroXI GAANNNNTTC 1 cut(s) 367
MseI TTAA 1 cut(s) 201
MslI CAYNNNNRTG 1 cut(s) 131
MspA1I CMGCKG 1 cut(s) 254
MspCI CTTAAG 1 cut(s) 200
MspI CCGG 3 cut(s) 32, 160, 345
MspR9I CCNGG 4 cut(s) 32, 62, 341, 360
MunI CAATTG 1 cut(s) 114
MvaI CCWGG 3 cut(s) 62, 341, 360
MwoI GCNNNNNNNGC 2 cut(s) 341, 427
NaeI GCCGGC 1 cut(s) 346
NciI CCSGG 1 cut(s) 32
NgoMIV GCCGGC 1 cut(s) 344
NlaIV GGNNCC 1 cut(s) 100
NmuCI GTSAC 1 cut(s) 144
PdiI GCCGGC 1 cut(s) 346
PdmI GAANNNNTTC 1 cut(s) 367
PfeI GAWTC 2 cut(s) 73, 247
PfoI TCCNGGA 2 cut(s) 30, 358
Psp6I CCWGG 3 cut(s) 60, 339, 358
PspGI CCWGG 3 cut(s) 60, 339, 358
PspN4I GGNNCC 1 cut(s) 100
PvuII CAGCTG 1 cut(s) 254
RigI GGCCGGCC 1 cut(s) 348
RsaI GTAC 1 cut(s) 413
RsaNI GTAC 1 cut(s) 412
RseI CAYNNNNRTG 1 cut(s) 131
SaqAI TTAA 1 cut(s) 201
ScrFI CCNGG 4 cut(s) 32, 62, 341, 360
SetI ASST 9 cut(s) 63, 187, 207, 256, 261, 294, 309, 333, 419
SfaNI GCATC 2 cut(s) 54, 113
SmiMI CAYNNNNRTG 1 cut(s) 131
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
Sse9I AATT 2 cut(s) 114, 229
SspMI CTAG 2 cut(s) 350, 439
StyD4I CCNGG 4 cut(s) 30, 60, 339, 358
TaaI ACNGT 2 cut(s) 111, 237
TasI AATT 2 cut(s) 114, 229
TfiI GAWTC 2 cut(s) 73, 247
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TscAI CASTG 2 cut(s) 25, 240
TseFI GTSAC 1 cut(s) 144
Tsp45I GTSAC 1 cut(s) 144
TspRI CASTG 2 cut(s) 25, 240
Vha464I CTTAAG 1 cut(s) 200
XmnI GAANNNNTTC 1 cut(s) 367
XspI CTAG 2 cut(s) 350, 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.