Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002466

Physical Location & Seq

Genomic Coordinates Reverse (-)

59858942 .. 59875864

Gene Structure 16923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0430600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3546 bp

ATGCCGCCTCCGCACAGGATTCTATCCGCTCTCTCTCTCACTCTTCCTTCATCTTCTCCTTCAGCCTTCGTTTCCGGAACCTTCTTCTTCCTTAGGTCATCTCCTTCCTACATAACTCCACCTCGCTCTTTCTCCTCCTCCATTTCTCTCTCGCATTCAACCATGTCGTACAGCCAGCGAAAGGGTGGGCAAAAGTGGAGAGAGAAAACAAAGACCGACAGCTCCATCGATAACAGACTTGGTGAATGGAGTGCTAGTGGAAGCAGTGGGCAAACTCAAGCATCAGTTCAGCCCATACAGTTTGGGAAGGTACAAGTAAATCCGGTTCCAGTACAAGGTCAAAAAGGAATATGGAAGCCTAAATCTTATGGAACTGTCAGTGGGTCTACGGCAGTAGTAGCTGAAGTACCTGTTGATAAAAGTTCGGTTGGATTAGAGCAAAATGGAGTTGGACTAGCAACTCCTCAGAAAAGTAGTTCTGGTGCAAGTAAGTTGTTCAAGGGTAATCTATTGGAAAATTTTACTGTGGACAACTCAACATATGCTCAGGTGCAAATACGAGCTACTTTCTATCCTAAATTTGAAAATGAGAAGTCAGATAACGAGATTAGGACAAGGATGATTGAGATGGTATCTCAAGGCTTGGCTACCTTGGAGGTTTCACTTAAACACTCGGGGTCACTTTTTATGTACGCTGGTAATGAGGGTGGTGCTTATGCCAAAAACAGCTTTGGTAATATATATACAGCTGTTGGTGTATTTGTTCTTGGACGGATGTTACGTGAAGCATGGGGATCTGAAGCAGCAAAAAAGCAAGCAGAGTTCAATGATTTCCTAGAGAGGAACCATATGTGCATATCAATGGAGCTCGTAACTGCAGTCCTAGGAGACCATGGACAGCGTCCAAATGAAGATTTTGTTGTGGTGACAGCAATCACAGAGCTGGGCAATGGGAAGCCAAAGTTCTACTCAACCCCTGAGATTATTGCTTTCTGTCGGAAATGGCGCCTTCCGACAAATCATGTATGGCTGTTCTCAACAAGGAAAGCAGTGACAACGTTTTTTGCTGCCTTTGATGCCTTGTGTGAAGAAGGAACTGCAACAACTGTGTGCAGAGCTCTTGATGAAGTTGCAGATATATCTATACCAGGTTCAAAAGATCATATCAAGGAGCAGGGTGAAATCTTAGAGGGTATTGTTGCTCGTATTGTAAGCCATGAGAGCTCAAAGCATATGGTGGAAGTCTTAAAAGATTTCCCTCCTCCCCCAATGGAAGGAGCTGGTCATGATTTGGGACCAAGCCTAAGGGAGATTTGTGCTGCAAATAGGTCGGATGAAACACAGCAAATAAAAGCTCTTCTCAAGGGTGTTGGCTCCTCTTTTTGCCCTGACCATTCAGACTGGCTTGGGGGAGCTGGTGATGCCCAATCTAGAAATGCAGATAAAGCAGTGGTTTCAAAATTTTTACAATCTCACCCTGCTGATTTTTCTACCACCAAATTGCAGGAAGTGATTCGTTTGATGAGAGAAAAGCATTTTCCTGCTGCCTTTAAATGCTACCATAACTACCACAAACAGGATTCCATGTCCAATGACAACCTTTTCTACAAAATGGTTATTCATGTCCATAGTGACTCTGCATTTCGGCGTTATCAGAAAGAGATGAGGTCAAAGCCAGGACTTTGGCCTTTATATCGAGGTTTTTTCGTTGACATTAATTTGTTCAAGGCAAGCAATGAGAGAGCTGCTGAGATTGCAAAAAACAAAAGCACTGTTGTGGACGATGATGGTGGCACTGGTATGTCCGGAAAACATGGATTGGTTGATGAAGACGCAAACTTAATGATCAAATTGAAATTTCTTACCTATAAGTTGCGTACCTTTTTGATCCGCAATGGTTTGTCAATTCTTTTTAAAGAAGGTCCGGCTGCTTATAAAGCCTATTACTTGAGGCAAATGAAAATATGGGGCACTTCAGCAGGAAAGCAGAGGGAGCTCAGCAAAATGCTTGATGAATGGGCTGTGTACATACGACGGAAATGTGGAAACAAACAGCTGTCGTCATCAGTGTACCTCAGTGAGGCTGAGCCTTTCCTTGAACAATATGCTAAACGGAGCCCACAGAATCAGGCTCTTATAGGATCTGCTGGAAACTTAGTAAGGGCTGAAGACTTCTTGGCCATAGTTGAGGGAGGAAGAGATGAAGAGGGTGATCTTGAGAAGGAGTTTGTACCATCAAGCCCCAGTGCCTCAACCGGGGACATCATTCCAAAGGCTGAGGGTCTGATTGTATTCTTTCCTGGACTACCTGGTTCTGCTAAGTCAGCACTGTGCAAGGAACTACTCAAAGCCCCTGGAGGATTTGGGGATGATAGGCCAGTTCACACTCTTATGGGTGACCTTGTTAAAGCAAGATATTGGCAGAAGGTCGCTGATGAGCGGAAGAAAAAACCGTATTCTATAATGCTTGCAGACAAGAATGCACCAAATGAAGAAGTGTGGAGACAGATTGAAGACATGTGCCACAGAACCGGGGCCAATGCAGTTCCAGTTGTTCCTGATTCTGAAGGCACTGATTCAAATCCGTTTTCTCTTGACGCATTAGCGGTTTTCATGTATCGTGTGCTTCAACGTTCTAATCATCCGGGAAACCTCGACAAGAATTCTCCAAATGCTGGCTATGTGCTGTTAATGTTCTATCACCTTTATGAGGGCAAAAGTCGTAGCGAGTTTGATGGTGAATTAGTTGAGCGTTTTGGTTCGCTTGTCAAGATACCACTGCTGAAATCTGATAGGAATCCATTACCTGATCCTGTGAAATCAACTCTTGAGGAGGGAATAAATTTATACAAGCTTCACACTAAGAAACATGGAAGATTGGAGTCTACCAAGGGAACCTATGCAAATGAGTGGGCTAAATGGGAGAAACAGTTGCGAGATGTTTTATTTGGCAATTCAGAGTATCTTAATTCTGTTCAGGTTCCTTTTGAGTCTGCTGTTAAGGAAGTATCAGAAGAGCTAAGTAAGATTGCAAAAGGTGAGTATGAGACTCCAGAGTACAGAACTCCAGATTCTGGGAAGAGGAAGATCGGGGCCATTGTTTTTGCTGCCATTAGTCTGCCTATTACCGAAATCAAAGGTTTGCTTGATAATTTGGCTGGGAAAGATAGTAAAGCCGCAGCTTTCCTCAAAGACAAGAATTTGGAGAACCAGATTAATAAGTCCCATGTTACTCTTGCACACAAGAGAAGTCATGGTGTTACTGCGGTGGCTAATTACGGCGTCTTCCTACACAAACAGGTCCCTGTGGATATAACTGCACTGCTCTTCACGGATAAAATGGCTGCGTTTGAAGCATGCCCTGGCTCTGTTGAAGGTGAAAGAGTCGTCTCCAAAAACGAGTGGCCACATGTTACCTTATGGACTGGAGAGGGTGTTGCAGCTAAGGAGGCCAACTTGTTACATAATTTGCATTTAGAAGGGAAGGCTACTCGTATTGCAATTGACCCACCTGCCAACATTCAGGGGCCGCTGGAGTTTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase

Protein Analysis

1181

Amino Acids

130.58

Weight (kDa)

8.55

Isoelectric Point (pI)

38.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55610 AT1G55610 AT3G13380
fragaria_vesca	FvH4_3g41391 FvH4_3g41392 FvH4_3g41420
malus_domestica	MD03G1044500.v1.1 MD11G1047400.v1.1
prunus_persica	Prupe.6G036400_v2.0.a1
pyrus_communis	pycom03g03440 pycom11g03840
rosa_chinensis	RchiOBHm_Chr5g0074361 RchiOBHm_Chr5g0074371 RchiOBHm_Chr5g0074401
rosa_laevigata	RLG00000036471 RLG00000036472
rosa_multiflora	Rmu_sc0000573.1_g000010 Rmu_sc0000573.1_g000018 Rmu_sc0004706.1_g000021 Rmu_sc0027008.1_g000001 Rmu_sc0027009.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007140 Rroxscaffold_1G00007150
rosa_rugosa	Rorug05G0430600 Rorug05G0430700 Rorug05G0430800 Rorug05G0430800
rosa_samantha	Rh5AG488300 Rh5AG488500 Rh5BG509000 Rh5BG509100 Rh5BG509300 Rh5CG532900 Rh5CG533000 Rh5CG533100 Rh5DG521600 Rh5DG521700 Rh5DG521800 Rh5DG522000
rosa_wichuraiana	Rw5G045290 Rw5G045300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1935
AarI	CACCTGC	1 cut(s)	3520
Acc36I	ACCTGC	1 cut(s)	3520
AccB1I	GGYRCC	1 cut(s)	1005
AccB7I	CCANNNNNTGG	2 cut(s)	2675, 3074
AccBSI	CCGCTC	2 cut(s)	29, 2440
AccI	GTMKAC	2 cut(s)	386, 2885
AccIII	TCCGGA	2 cut(s)	74, 1805
AciI	CCGC	9 cut(s)	5, 11, 27, 1891, 2440, 2606, 3177, 3266, 3530
AclI	AACGTT	2 cut(s)	1058, 2632
AclWI	GGATC	4 cut(s)	802, 1882, 2149, 2804
AcoI	YGGCCR	2 cut(s)	2178, 3404
AcsI	RAATTY	7 cut(s)	517, 578, 1460, 1856, 2662, 2842, 3199
AcuI	CTGAAG	6 cut(s)	45, 423, 819, 1959, 2187, 2586
AcyI	GRCGYC	2 cut(s)	1006, 3282
AfiI	CCNNNNNNNGG	9 cut(s)	181, 335, 1274, 1576, 2080, 2256, 2675, 2710, 3074
AflIII	ACRYGT	2 cut(s)	2517, 3409
AjnI	CCWGG	6 cut(s)	1147, 1675, 2299, 2308, 2353, 3361
AleI	CACNNNNGTG	1 cut(s)	1775
Alw21I	GWGCWC	4 cut(s)	870, 1120, 1226, 1998
Alw26I	GTCTC	4 cut(s)	882, 2497, 3041, 3394
AlwI	GGATC	4 cut(s)	802, 1882, 2149, 2804
AlwNI	CAGNNNCTG	1 cut(s)	3074
Ama87I	CYCGRG	1 cut(s)	673
Aor13HI	TCCGGA	2 cut(s)	74, 1805
AoxI	GGCC	8 cut(s)	1685, 2178, 2375, 2535, 3093, 3404, 3450, 3527
ApoI	RAATTY	7 cut(s)	517, 578, 1460, 1856, 2662, 2842, 3199
AseI	ATTAAT	2 cut(s)	1716, 3216
Asp700I	GAANNNNTTC	1 cut(s)	1512
AspA2I	CCTAGG	1 cut(s)	883
AspLEI	GCGC	1 cut(s)	1008
AspS9I	GGNCC	6 cut(s)	1295, 1922, 2535, 3093, 3301, 3527
AsuC2I	CCSGG	3 cut(s)	2257, 2533, 2646
AvaI	CYCGRG	1 cut(s)	673
AvaII	GGWCC	3 cut(s)	1295, 1922, 3301
AvrII	CCTAGG	1 cut(s)	883
AxyI	CCTNAGG	2 cut(s)	92, 1304
BaeGI	GKGCMC	1 cut(s)	1973
BalI	TGGCCA	2 cut(s)	2180, 3406
BanI	GGYRCC	1 cut(s)	1005
BanII	GRGCYC	5 cut(s)	870, 1120, 1226, 1998, 2120
BbsI	GAAGAC	4 cut(s)	1836, 2175, 2520, 3277
Bbv12I	GWGCWC	4 cut(s)	870, 1120, 1226, 1998
BbvCI	CCTCAGC	1 cut(s)	2277
BccI	CCATC	5 cut(s)	233, 622, 1781, 2242, 2729
BceAI	ACGGC	2 cut(s)	405, 3295
BcgI	CGANNNNNNTGC	2 cut(s)	1311, 1345
BciT130I	CCWGG	6 cut(s)	1149, 1677, 2301, 2310, 2355, 3363
BclI	TGATCA	1 cut(s)	1845
BcnI	CCSGG	3 cut(s)	2257, 2533, 2646
BcoDI	GTCTC	4 cut(s)	882, 2497, 3041, 3394
BfaI	CTAG	5 cut(s)	255, 455, 836, 884, 1431
BfmI	CTRYAG	1 cut(s)	876
BfoI	RGCGCY	1 cut(s)	1009
BfuAI	ACCTGC	1 cut(s)	3520
BlnI	CCTAGG	1 cut(s)	883
BlpI	GCTNAGC	2 cut(s)	1997, 2085
Bme1390I	CCNGG	9 cut(s)	1149, 1677, 2257, 2301, 2310, 2355, 2533, 2646, 3363
Bme18I	GGWCC	3 cut(s)	1295, 1922, 3301
BmeT110I	CYCGRG	1 cut(s)	673
BmgT120I	GGNCC	6 cut(s)	1295, 1922, 2535, 3093, 3301, 3527
BmrFI	CCNGG	9 cut(s)	1149, 1677, 2257, 2301, 2310, 2355, 2533, 2646, 3363
BmrI	ACTGGG	1 cut(s)	2238
BmsI	GCATC	3 cut(s)	290, 1066, 1411
BmuI	ACTGGG	1 cut(s)	2238
BpiI	GAAGAC	4 cut(s)	1836, 2175, 2520, 3277
BpmI	CTGGAG	4 cut(s)	2376, 3036, 3051, 3447
Bpu10I	CCTNAGC	3 cut(s)	546, 2277, 3444
Bpu1102I	GCTNAGC	2 cut(s)	1997, 2085
BpuEI	CTTGAG	6 cut(s)	261, 621, 1346, 1969, 2237, 2849
BpuMI	CCSGG	3 cut(s)	2257, 2533, 2646
Bsa29I	ATCGAT	1 cut(s)	228
BsaAI	YACGTR	1 cut(s)	782
BsaBI	GATNNNNATC	2 cut(s)	2580, 2796
BsaHI	GRCGYC	2 cut(s)	1006, 3282
BsaI	GGTCTC	1 cut(s)	882
BsaJI	CCNNGG	8 cut(s)	651, 883, 892, 2256, 2353, 2532, 2889, 3361
BsaWI	WCCGGW	3 cut(s)	74, 322, 1805
BsaXI	ACNNNNNCTCC	6 cut(s)	241, 271, 2915, 2945, 3420, 3450
Bsc4I	CCNNNNNNNGG	9 cut(s)	181, 335, 1274, 1576, 2080, 2256, 2675, 2710, 3074
Bse1I	ACTGG	7 cut(s)	329, 1406, 1801, 2244, 2378, 2549, 3430
Bse21I	CCTNAGG	2 cut(s)	92, 1304
Bse3DI	GCAATG	3 cut(s)	955, 1741, 1900
Bse8I	GATNNNNATC	2 cut(s)	2580, 2796
BseAI	TCCGGA	2 cut(s)	74, 1805
BseBI	CCWGG	6 cut(s)	1149, 1677, 2301, 2310, 2355, 3363
BseCI	ATCGAT	1 cut(s)	228
BseDI	CCNNGG	8 cut(s)	651, 883, 892, 2256, 2353, 2532, 2889, 3361
BseGI	GGATG	5 cut(s)	624, 780, 1339, 2374, 2641
BseJI	GATNNNNATC	2 cut(s)	2580, 2796
BseLI	CCNNNNNNNGG	9 cut(s)	181, 335, 1274, 1576, 2080, 2256, 2675, 2710, 3074
BseMI	GCAATG	3 cut(s)	955, 1741, 1900
BseMII	CTCAG	8 cut(s)	479, 560, 969, 1740, 2011, 2076, 2089, 2268
BseNI	ACTGG	7 cut(s)	329, 1406, 1801, 2244, 2378, 2549, 3430
BseRI	GAGGAG	6 cut(s)	124, 127, 453, 1251, 1366, 2846
BseSI	GKGCMC	1 cut(s)	1973
BseYI	CCCAGC	2 cut(s)	943, 3158
BsgI	GTGCAG	2 cut(s)	1132, 3303
BshFI	GGCC	8 cut(s)	1687, 2180, 2377, 2537, 3095, 3406, 3452, 3529
BshNI	GGYRCC	1 cut(s)	1005
BshVI	ATCGAT	1 cut(s)	228
BsiHKAI	GWGCWC	4 cut(s)	870, 1120, 1226, 1998
BsiHKCI	CYCGRG	1 cut(s)	673
BsiSI	CCGG	7 cut(s)	75, 323, 1806, 1925, 2256, 2532, 2645
BslFI	GGGAC	4 cut(s)	1308, 2273, 3208, 3287
BslI	CCNNNNNNNGG	9 cut(s)	181, 335, 1274, 1576, 2080, 2256, 2675, 2710, 3074
BsmAI	GTCTC	4 cut(s)	882, 2497, 3041, 3394
BsmBI	CGTCTC	1 cut(s)	3394
BsmFI	GGGAC	4 cut(s)	1308, 2273, 3208, 3287
BsmI	GAATGC	2 cut(s)	154, 2485
BsnI	GGCC	8 cut(s)	1687, 2180, 2377, 2537, 3095, 3406, 3452, 3529
Bso31I	GGTCTC	1 cut(s)	882
BsoBI	CYCGRG	1 cut(s)	673
Bsp1286I	GDGCHC	6 cut(s)	870, 1120, 1226, 1973, 1998, 2120
Bsp13I	TCCGGA	2 cut(s)	74, 1805
Bsp1407I	TGTACA	1 cut(s)	2025
Bsp143I	GATC	8 cut(s)	794, 1159, 1845, 1887, 2141, 2212, 2809, 3087
Bsp1720I	GCTNAGC	2 cut(s)	1997, 2085
Bsp19I	CCATGG	1 cut(s)	892
BspACI	CCGC	9 cut(s)	5, 11, 27, 1891, 2440, 2606, 3177, 3266, 3530
BspANI	GGCC	8 cut(s)	1687, 2180, 2377, 2537, 3095, 3406, 3452, 3529
BspCNI	CTCAG	8 cut(s)	478, 559, 970, 1741, 2010, 2077, 2088, 2269
BspDI	ATCGAT	1 cut(s)	228
BspEI	TCCGGA	2 cut(s)	74, 1805
BspHI	TCATGA	1 cut(s)	1285
BspMAI	CTGCAG	1 cut(s)	880
BspMI	ACCTGC	1 cut(s)	3520
BspPI	GGATC	4 cut(s)	802, 1882, 2149, 2804
BspQI	GCTCTTC	3 cut(s)	1362, 3009, 3332
BspT107I	GGYRCC	1 cut(s)	1005
BspTNI	GGTCTC	1 cut(s)	882
BsrBI	CCGCTC	2 cut(s)	29, 2440
BsrDI	GCAATG	3 cut(s)	955, 1741, 1900
BsrGI	TGTACA	1 cut(s)	2025
BsrI	ACTGG	7 cut(s)	329, 1406, 1801, 2244, 2378, 2549, 3430
BssECI	CCNNGG	8 cut(s)	651, 883, 892, 2256, 2353, 2532, 2889, 3361
BssMI	GATC	8 cut(s)	794, 1159, 1845, 1887, 2141, 2212, 2809, 3087
BssNI	GRCGYC	2 cut(s)	1006, 3282
BssT1I	CCWWGG	4 cut(s)	651, 883, 892, 2889
Bst2UI	CCWGG	6 cut(s)	1149, 1677, 2301, 2310, 2355, 3363
Bst4CI	ACNGT	8 cut(s)	300, 376, 526, 1108, 1774, 2331, 2454, 2931
Bst6I	CTCTTC	7 cut(s)	48, 1362, 2191, 2199, 3009, 3074, 3332
BstACI	GRCGYC	2 cut(s)	1006, 3282
BstAUI	TGTACA	1 cut(s)	2025
BstBAI	YACGTR	1 cut(s)	782
BstC8I	GCNNGC	6 cut(s)	176, 816, 1732, 2469, 2677, 3358
BstDSI	CCRYGG	1 cut(s)	892
BstEII	GGTNACC	1 cut(s)	2396
BstENI	CCTNNNNNAGG	2 cut(s)	2078, 2708
BstF5I	GGATG	5 cut(s)	624, 780, 1339, 2374, 2641
BstH2I	RGCGCY	1 cut(s)	1009
BstHHI	GCGC	1 cut(s)	1008
BstKTI	GATC	8 cut(s)	797, 1162, 1848, 1890, 2144, 2215, 2812, 3090
BstMAI	GTCTC	4 cut(s)	882, 2497, 3041, 3394
BstMBI	GATC	8 cut(s)	794, 1159, 1845, 1887, 2141, 2212, 2809, 3087
BstNI	CCWGG	6 cut(s)	1149, 1677, 2301, 2310, 2355, 3363
BstNSI	RCATGY	3 cut(s)	2521, 3360, 3413
BstPI	GGTNACC	1 cut(s)	2396
BstSCI	CCNGG	9 cut(s)	1147, 1675, 2255, 2299, 2308, 2353, 2531, 2644, 3361
BstSFI	CTRYAG	1 cut(s)	876
BstSLI	GKGCMC	1 cut(s)	1973
BstV2I	GAAGAC	4 cut(s)	1836, 2175, 2520, 3277
BstX2I	RGATCY	2 cut(s)	794, 2141
BstXI	CCANNNNNNTGG	1 cut(s)	1683
BstYI	RGATCY	2 cut(s)	794, 2141
Bsu15I	ATCGAT	1 cut(s)	228
Bsu36I	CCTNAGG	2 cut(s)	92, 1304
BsuRI	GGCC	8 cut(s)	1687, 2180, 2377, 2537, 3095, 3406, 3452, 3529
BsuTUI	ATCGAT	1 cut(s)	228
BtgI	CCRYGG	1 cut(s)	892
BtsCI	GGATG	5 cut(s)	624, 780, 1339, 2374, 2641
BtsI	GCAGTG	5 cut(s)	271, 1056, 1455, 2777, 3320
BveI	ACCTGC	1 cut(s)	3520
Cac8I	GCNNGC	6 cut(s)	176, 816, 1732, 2469, 2677, 3358
CaiI	CAGNNNCTG	1 cut(s)	3074
CciI	TCATGA	1 cut(s)	1285
CfoI	GCGC	1 cut(s)	1008
Cfr13I	GGNCC	6 cut(s)	1295, 1922, 2535, 3093, 3301, 3527
ClaI	ATCGAT	1 cut(s)	228
CseI	GACGC	4 cut(s)	890, 1841, 2606, 3271
CsiI	ACCWGGT	2 cut(s)	1147, 2308
DinI	GGCGCC	1 cut(s)	1007
DpnI	GATC	8 cut(s)	796, 1161, 1847, 1889, 2143, 2214, 2811, 3089
DpnII	GATC	8 cut(s)	794, 1159, 1845, 1887, 2141, 2212, 2809, 3087
DraI	TTTAAA	2 cut(s)	1552, 1915
EaeI	YGGCCR	2 cut(s)	2178, 3404
Eam1104I	CTCTTC	7 cut(s)	48, 1362, 2191, 2199, 3009, 3074, 3332
EarI	CTCTTC	7 cut(s)	48, 1362, 2191, 2199, 3009, 3074, 3332
Ecl136II	GAGCTC	4 cut(s)	868, 1118, 1224, 1996
Eco130I	CCWWGG	4 cut(s)	651, 883, 892, 2889
Eco24I	GRGCYC	5 cut(s)	870, 1120, 1226, 1998, 2120
Eco31I	GGTCTC	1 cut(s)	882
Eco47I	GGWCC	3 cut(s)	1295, 1922, 3301
Eco53kI	GAGCTC	4 cut(s)	868, 1118, 1224, 1996
Eco57I	CTGAAG	6 cut(s)	45, 423, 819, 1959, 2187, 2586
Eco81I	CCTNAGG	2 cut(s)	92, 1304
Eco88I	CYCGRG	1 cut(s)	673
Eco91I	GGTNACC	1 cut(s)	2396
EcoICRI	GAGCTC	4 cut(s)	868, 1118, 1224, 1996
EcoNI	CCTNNNNNAGG	2 cut(s)	2078, 2708
EcoO109I	RGGNCCY	1 cut(s)	3301
EcoO65I	GGTNACC	1 cut(s)	2396
EcoRI	GAATTC	1 cut(s)	2662
EcoRII	CCWGG	6 cut(s)	1147, 1675, 2299, 2308, 2353, 3361
EcoT14I	CCWWGG	4 cut(s)	651, 883, 892, 2889
EcoT38I	GRGCYC	5 cut(s)	870, 1120, 1226, 1998, 2120
EgeI	GGCGCC	1 cut(s)	1007
EheI	GGCGCC	1 cut(s)	1007
ErhI	CCWWGG	4 cut(s)	651, 883, 892, 2889
Esp3I	CGTCTC	1 cut(s)	3394
FalI	AAGNNNNNCTT	2 cut(s)	3129, 3161
FaqI	GGGAC	4 cut(s)	1308, 2273, 3208, 3287
FauNDI	CATATG	3 cut(s)	541, 849, 1233
FbaI	TGATCA	1 cut(s)	1845
FblI	GTMKAC	2 cut(s)	386, 2885
FokI	GGATG	5 cut(s)	631, 787, 1346, 2381, 2628
FriOI	GRGCYC	5 cut(s)	870, 1120, 1226, 1998, 2120
FspBI	CTAG	5 cut(s)	255, 455, 836, 884, 1431
GlaI	GCGC	1 cut(s)	1007
GsaI	CCCAGC	2 cut(s)	947, 3162
GsuI	CTGGAG	4 cut(s)	2376, 3036, 3051, 3447
HaeII	RGCGCY	1 cut(s)	1009
HaeIII	GGCC	8 cut(s)	1687, 2180, 2377, 2537, 3095, 3406, 3452, 3529
HapII	CCGG	7 cut(s)	75, 323, 1806, 1925, 2256, 2532, 2645
HgaI	GACGC	4 cut(s)	890, 1841, 2606, 3271
HhaI	GCGC	1 cut(s)	1008
Hin1I	GRCGYC	2 cut(s)	1006, 3282
Hin6I	GCGC	1 cut(s)	1006
HinP1I	GCGC	1 cut(s)	1006
HincII	GTYRAC	1 cut(s)	1711
HindII	GTYRAC	1 cut(s)	1711
HindIII	AAGCTT	1 cut(s)	2852
HpaII	CCGG	7 cut(s)	75, 323, 1806, 1925, 2256, 2532, 2645
Hpy166II	GTNNAC	8 cut(s)	387, 529, 1711, 1780, 2026, 2071, 2383, 2886
Hpy8I	GTNNAC	8 cut(s)	387, 529, 1711, 1780, 2026, 2071, 2383, 2886
Hpy99I	CGWCG	1 cut(s)	2037
HpyCH4III	ACNGT	8 cut(s)	300, 376, 526, 1108, 1774, 2331, 2454, 2931
HpyCH4IV	ACGT	3 cut(s)	781, 1058, 2632
HpySE526I	ACGT	3 cut(s)	781, 1058, 2632
Hsp92I	GRCGYC	2 cut(s)	1006, 3282
HspAI	GCGC	1 cut(s)	1006
KasI	GGCGCC	1 cut(s)	1005
Kpn2I	TCCGGA	2 cut(s)	74, 1805
Ksp22I	TGATCA	1 cut(s)	1845
Kzo9I	GATC	8 cut(s)	794, 1159, 1845, 1887, 2141, 2212, 2809, 3087
LguI	GCTCTTC	3 cut(s)	1362, 3009, 3332
LmnI	GCTCC	8 cut(s)	227, 865, 1171, 1277, 1379, 1412, 1993, 2115
LweI	GCATC	3 cut(s)	290, 1066, 1411
MabI	ACCWGGT	2 cut(s)	1147, 2308
MaeI	CTAG	5 cut(s)	255, 455, 836, 884, 1431
MaeII	ACGT	3 cut(s)	781, 1058, 2632
MalI	GATC	8 cut(s)	796, 1161, 1847, 1889, 2143, 2214, 2811, 3089
MbiI	CCGCTC	2 cut(s)	29, 2440
MboI	GATC	8 cut(s)	794, 1159, 1845, 1887, 2141, 2212, 2809, 3087
MfeI	CAATTG	1 cut(s)	3501
MflI	RGATCY	2 cut(s)	794, 2141
MhlI	GDGCHC	6 cut(s)	870, 1120, 1226, 1973, 1998, 2120
MlsI	TGGCCA	2 cut(s)	2180, 3406
MluNI	TGGCCA	2 cut(s)	2180, 3406
Mly113I	GGCGCC	1 cut(s)	1006
MlyI	GAGTC	5 cut(s)	1628, 2891, 2999, 3043, 3393
MmeI	TCCRAC	5 cut(s)	409, 430, 977, 1037, 1311
Mox20I	TGGCCA	2 cut(s)	2180, 3406
MroI	TCCGGA	2 cut(s)	74, 1805
MroXI	GAANNNNTTC	1 cut(s)	1512
MscI	TGGCCA	2 cut(s)	2180, 3406
MslI	CAYNNNNRTG	5 cut(s)	860, 1775, 1799, 2390, 2706
Msp20I	TGGCCA	2 cut(s)	2180, 3406
MspA1I	CMGCKG	3 cut(s)	749, 2056, 3532
MspI	CCGG	7 cut(s)	75, 323, 1806, 1925, 2256, 2532, 2645
MspR9I	CCNGG	9 cut(s)	1149, 1677, 2257, 2301, 2310, 2355, 2533, 2646, 3363
MunI	CAATTG	1 cut(s)	3501
Mva1269I	GAATGC	2 cut(s)	154, 2485
MvaI	CCWGG	6 cut(s)	1149, 1677, 2301, 2310, 2355, 3363
NarI	GGCGCC	1 cut(s)	1006
NciI	CCSGG	3 cut(s)	2257, 2533, 2646
NcoI	CCATGG	1 cut(s)	892
NdeI	CATATG	3 cut(s)	541, 849, 1233
NdeII	GATC	8 cut(s)	794, 1159, 1845, 1887, 2141, 2212, 2809, 3087
NmuCI	GTSAC	5 cut(s)	678, 925, 1051, 1631, 2396
NspI	RCATGY	3 cut(s)	2521, 3360, 3413
OliI	CACNNNNGTG	1 cut(s)	1775
PaeI	GCATGC	1 cut(s)	3360
PagI	TCATGA	1 cut(s)	1285
PaqCI	CACCTGC	1 cut(s)	3520
PciI	ACATGT	2 cut(s)	2517, 3409
PciSI	GCTCTTC	3 cut(s)	1362, 3009, 3332
PcsI	WCGNNNNNNNCGW	1 cut(s)	778
PctI	GAATGC	2 cut(s)	154, 2485
PdmI	GAANNNNTTC	1 cut(s)	1512
PfeI	GAWTC	8 cut(s)	19, 1513, 1580, 2125, 2561, 2576, 2797, 3071
PflFI	GACNNNGTC	1 cut(s)	900
PflMI	CCANNNNNTGG	2 cut(s)	2675, 3074
PfoI	TCCNGGA	2 cut(s)	2299, 2644
PleI	GAGTC	5 cut(s)	1628, 2890, 2998, 3043, 3392
PluTI	GGCGCC	1 cut(s)	1009
PpsI	GAGTC	5 cut(s)	1628, 2890, 2998, 3043, 3392
Ppu21I	YACGTR	1 cut(s)	782
PpuMI	RGGWCCY	1 cut(s)	3301
PscI	ACATGT	2 cut(s)	2517, 3409
PshBI	ATTAAT	2 cut(s)	1716, 3216
PsiI	TTATAA	1 cut(s)	1935
Psp124BI	GAGCTC	4 cut(s)	870, 1120, 1226, 1998
Psp1406I	AACGTT	2 cut(s)	1058, 2632
Psp5II	RGGWCCY	1 cut(s)	3301
Psp6I	CCWGG	6 cut(s)	1147, 1675, 2299, 2308, 2353, 3361
PspEI	GGTNACC	1 cut(s)	2396
PspFI	CCCAGC	2 cut(s)	943, 3158
PspGI	CCWGG	6 cut(s)	1147, 1675, 2299, 2308, 2353, 3361
PspPI	GGNCC	6 cut(s)	1295, 1922, 2535, 3093, 3301, 3527
PspPPI	RGGWCCY	1 cut(s)	3301
PsrI	GAACNNNNNNTAC	2 cut(s)	309, 341
PstI	CTGCAG	1 cut(s)	880
PstNI	CAGNNNCTG	1 cut(s)	3074
PsuI	RGATCY	2 cut(s)	794, 2141
PsyI	GACNNNGTC	1 cut(s)	900
PvuII	CAGCTG	2 cut(s)	749, 2056
RseI	CAYNNNNRTG	5 cut(s)	860, 1775, 1799, 2390, 2706
SacI	GAGCTC	4 cut(s)	870, 1120, 1226, 1998
SapI	GCTCTTC	3 cut(s)	1362, 3009, 3332
Sau3AI	GATC	8 cut(s)	794, 1159, 1845, 1887, 2141, 2212, 2809, 3087
Sau96I	GGNCC	6 cut(s)	1295, 1922, 2535, 3093, 3301, 3527
SchI	GAGTC	5 cut(s)	1628, 2891, 2999, 3043, 3393
ScrFI	CCNGG	9 cut(s)	1149, 1677, 2257, 2301, 2310, 2355, 2533, 2646, 3363
SduI	GDGCHC	6 cut(s)	870, 1120, 1226, 1973, 1998, 2120
SexAI	ACCWGGT	2 cut(s)	1147, 2308
SfaNI	GCATC	3 cut(s)	290, 1066, 1411
SfcI	CTRYAG	1 cut(s)	876
SfoI	GGCGCC	1 cut(s)	1007
SinI	GGWCC	3 cut(s)	1295, 1922, 3301
SmiMI	CAYNNNNRTG	5 cut(s)	860, 1775, 1799, 2390, 2706
SmlI	CTYRAG	6 cut(s)	276, 636, 1361, 1948, 2216, 2828
SmoI	CTYRAG	6 cut(s)	276, 636, 1361, 1948, 2216, 2828
SphI	GCATGC	1 cut(s)	3360
SsiI	CCGC	9 cut(s)	5, 11, 27, 1891, 2440, 2606, 3177, 3266, 3530
SspDI	GGCGCC	1 cut(s)	1005
SspMI	CTAG	5 cut(s)	255, 455, 836, 884, 1431
SstI	GAGCTC	4 cut(s)	870, 1120, 1226, 1998
StyD4I	CCNGG	9 cut(s)	1147, 1675, 2255, 2299, 2308, 2353, 2531, 2644, 3361
StyI	CCWWGG	4 cut(s)	651, 883, 892, 2889
TaaI	ACNGT	8 cut(s)	300, 376, 526, 1108, 1774, 2331, 2454, 2931
TaiI	ACGT	3 cut(s)	784, 1061, 2635
TaqI	TCGA	3 cut(s)	228, 1696, 2655
TaqII	GACCGA	1 cut(s)	230
TatI	WGTACW	3 cut(s)	331, 2025, 3057
TauI	GCSGC	3 cut(s)	7, 3179, 3532
TfiI	GAWTC	8 cut(s)	19, 1513, 1580, 2125, 2561, 2576, 2797, 3071
TseFI	GTSAC	5 cut(s)	678, 925, 1051, 1631, 2396
Tsp45I	GTSAC	5 cut(s)	678, 925, 1051, 1631, 2396
TspGWI	ACGGA	5 cut(s)	787, 2050, 2128, 2574, 3347
Tth111I	GACNNNGTC	1 cut(s)	900
Van91I	CCANNNNNTGG	2 cut(s)	2675, 3074
VpaK11BI	GGWCC	3 cut(s)	1295, 1922, 3301
VspI	ATTAAT	2 cut(s)	1716, 3216
XagI	CCTNNNNNAGG	2 cut(s)	2078, 2708
XapI	RAATTY	7 cut(s)	517, 578, 1460, 1856, 2662, 2842, 3199
XbaI	TCTAGA	1 cut(s)	1430
XceI	RCATGY	3 cut(s)	2521, 3360, 3413
XcmI	CCANNNNNNNNNTGG	1 cut(s)	182
XmaJI	CCTAGG	1 cut(s)	883
XmiI	GTMKAC	2 cut(s)	386, 2885
XmnI	GAANNNNTTC	1 cut(s)	1512
XspI	CTAG	5 cut(s)	255, 455, 836, 884, 1431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.