Rorug05G0430700
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002466
Physical Location & Seq
Forward (+)
59859164 .. 59859856
693 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0430700.1

Sequence Viewer

Length: 693 bp
ATGGCTAAGAATGATGTGAAGCTTCTAGGAGCATGGCCGAGCCCATTTGTGTTGAGGGCTCGGATTGCCTTGAATGTCAAGTCTGTCGAGTACGAGTTTCTGCAGGAGACAATGGAACCCAAGAGCGAGCTTCTGCTCAAATCGAACCCGGTTCACAAGAAAATCCCGGTTCTGCTTCACAATGAGAAACCCATCTGTGAATCTCTTATCATTGTGGAATACATCGACGAGGTTTGGGCCTCTGGCCCATCAATCCTACCTTCTGGTCCCTATGAGCGCGCTGTTGCCAGATTCTGGGCTGCTTATATTGATGAGAAGTGGTTCCCCGCGATGAAAGGCATCGTTGCTGCTCAAGGTGATGAGGCAAAGAAGGCAGCAGTCGGGCAAGTGGCAGAAGGTCTAGTGCTGTTGGAGGATGCATTTCAAAAGATTAGCAAAGGAAAGAGTTTCTTTGGCGGAGATCACATTGGCTACCTTGACATTGCACTTGGGGGACTTTTGGGATGGCTGAGAGTGACTGAGGGGATGGCTGGGATCAAGCTGCTTAACGAAACAAAGACGCCGGGGCTGGTCAAGTGGGCTGACAAGTTTGCTGCGGATCCTGCTGTGAAAGATGTTATGCCAGAGACAGAGAAGCTTGCTGAGTTTAGTAAGTTTATTGTAGCCAAATTAAGAGCTGCTGCAGCTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase

Protein Analysis

230

Amino Acids

25.25

Weight (kDa)

7.75

Isoelectric Point (pI)

28.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N PF02798 6 - 77 3.7e-19 Glutathione S-transferase, N-terminal domain
GST_N_3 PF13417 14 - 77 2e-12 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 14 - 77 3.5e-11 Glutathione S-transferase, N-terminal domain
GST_C PF00043 98 - 201 5.4e-07 Glutathione S-transferase, C-terminal domain
GST_C_7 PF22041 120 - 175 8.8e-06 Glutathione S-transferase, C-terminal domain
GST_C_2 PF13410 121 - 194 2.7e-06 Glutathione S-transferase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 294
AccII CGCG 2 cut(s) 279, 329
AciI CCGC 3 cut(s) 327, 456, 596
AclWI GGATC 3 cut(s) 542, 593, 606
AcoI YGGCCR 1 cut(s) 35
AcyI GRCGYC 1 cut(s) 560
AfaI GTAC 1 cut(s) 92
AfiI CCNNNNNNNGG 1 cut(s) 294
AgsI TTSAA 2 cut(s) 73, 425
AluBI AGCT 6 cut(s) 22, 130, 541, 637, 677, 686
AluI AGCT 6 cut(s) 22, 130, 541, 637, 677, 686
Alw26I GTCTC 2 cut(s) 101, 620
AlwI GGATC 3 cut(s) 542, 593, 606
AlwNI CAGNNNCTG 1 cut(s) 294
AoxI GGCC 3 cut(s) 35, 237, 244
ApeKI GCWGC 8 cut(s) 299, 347, 374, 541, 593, 677, 680, 683
Asp700I GAANNNNTTC 1 cut(s) 320
AspLEI GCGC 2 cut(s) 279, 281
AspS9I GGNCC 3 cut(s) 237, 245, 266
AsuC2I CCSGG 3 cut(s) 149, 167, 564
AsuHPI GGTGA 1 cut(s) 368
AvaII GGWCC 1 cut(s) 266
BamHI GGATCC 1 cut(s) 598
BanII GRGCYC 2 cut(s) 44, 61
BbvI GCAGC 7 cut(s) 286, 334, 386, 528, 580, 664, 667
BccI CCATC 4 cut(s) 200, 256, 498, 520
BcnI CCSGG 3 cut(s) 149, 167, 564
BcoDI GTCTC 2 cut(s) 101, 620
BfaI CTAG 2 cut(s) 26, 401
BfmI CTRYAG 2 cut(s) 101, 681
BisI GCNGC 8 cut(s) 300, 348, 375, 542, 594, 678, 681, 684
BlsI GCNGC 8 cut(s) 301, 349, 376, 543, 595, 679, 682, 685
Bme1390I CCNGG 3 cut(s) 149, 167, 564
Bme18I GGWCC 1 cut(s) 266
BmgT120I GGNCC 3 cut(s) 237, 245, 266
BmiI GGNNCC 4 cut(s) 117, 268, 323, 600
BmrFI CCNGG 3 cut(s) 149, 167, 564
BmsI GCATC 2 cut(s) 348, 406
BpuEI CTTGAG 1 cut(s) 336
BpuMI CCSGG 3 cut(s) 149, 167, 564
BsaHI GRCGYC 1 cut(s) 560
BsaJI CCNNGG 1 cut(s) 563
Bsc4I CCNNNNNNNGG 1 cut(s) 294
Bse3DI GCAATG 1 cut(s) 480
BseDI CCNNGG 1 cut(s) 563
BseGI GGATG 3 cut(s) 421, 509, 531
BseLI CCNNNNNNNGG 1 cut(s) 294
BseMI GCAATG 1 cut(s) 480
BseMII CTCAG 3 cut(s) 500, 510, 633
BsePI GCGCGC 1 cut(s) 277
BseXI GCAGC 7 cut(s) 286, 334, 386, 528, 580, 664, 667
BseYI CCCAGC 1 cut(s) 530
Bsh1236I CGCG 2 cut(s) 279, 329
BshFI GGCC 3 cut(s) 37, 239, 246
BsiSI CCGG 3 cut(s) 149, 167, 563
BslFI GGGAC 2 cut(s) 252, 507
BslI CCNNNNNNNGG 1 cut(s) 294
BsmAI GTCTC 2 cut(s) 101, 620
BsmFI GGGAC 2 cut(s) 252, 507
BsnI GGCC 3 cut(s) 37, 239, 246
Bsp1286I GDGCHC 2 cut(s) 44, 61
Bsp143I GATC 3 cut(s) 460, 534, 598
BspACI CCGC 3 cut(s) 327, 456, 596
BspANI GGCC 3 cut(s) 37, 239, 246
BspCNI CTCAG 3 cut(s) 501, 511, 634
BspFNI CGCG 2 cut(s) 279, 329
BspLI GGNNCC 4 cut(s) 117, 268, 323, 600
BspMAI CTGCAG 2 cut(s) 105, 685
BspPI GGATC 3 cut(s) 542, 593, 606
BsrDI GCAATG 1 cut(s) 480
BssECI CCNNGG 1 cut(s) 563
BssHII GCGCGC 1 cut(s) 277
BssMI GATC 3 cut(s) 460, 534, 598
BssNI GRCGYC 1 cut(s) 560
BstACI GRCGYC 1 cut(s) 560
BstC8I GCNNGC 3 cut(s) 128, 279, 639
BstDEI CTNAG 5 cut(s) 6, 509, 519, 642, 687
BstF5I GGATG 3 cut(s) 421, 509, 531
BstFNI CGCG 2 cut(s) 279, 329
BstHHI GCGC 2 cut(s) 279, 281
BstKTI GATC 3 cut(s) 463, 537, 601
BstMAI GTCTC 2 cut(s) 101, 620
BstMBI GATC 3 cut(s) 460, 534, 598
BstMWI GCNNNNNNNGC 4 cut(s) 65, 371, 602, 683
BstSCI CCNGG 3 cut(s) 147, 165, 562
BstSFI CTRYAG 2 cut(s) 101, 681
BstUI CGCG 2 cut(s) 279, 329
BstV1I GCAGC 7 cut(s) 286, 334, 386, 528, 580, 664, 667
BstX2I RGATCY 1 cut(s) 598
BstYI RGATCY 1 cut(s) 598
BsuRI GGCC 3 cut(s) 37, 239, 246
BtgZI GCGATG 1 cut(s) 344
BtsCI GGATG 3 cut(s) 421, 509, 531
Cac8I GCNNGC 3 cut(s) 128, 279, 639
CaiI CAGNNNCTG 1 cut(s) 294
CfoI GCGC 2 cut(s) 279, 281
Cfr13I GGNCC 3 cut(s) 237, 245, 266
CseI GACGC 1 cut(s) 568
Csp6I GTAC 1 cut(s) 91
CviAII CATG 1 cut(s) 33
CviQI GTAC 1 cut(s) 91
DdeI CTNAG 5 cut(s) 6, 509, 519, 642, 687
DpnI GATC 3 cut(s) 462, 536, 600
DpnII GATC 3 cut(s) 460, 534, 598
EaeI YGGCCR 1 cut(s) 35
EciI GGCGGA 1 cut(s) 471
Eco24I GRGCYC 2 cut(s) 44, 61
Eco47I GGWCC 1 cut(s) 266
EcoT22I ATGCAT 1 cut(s) 421
EcoT38I GRGCYC 2 cut(s) 44, 61
FaeI CATG 1 cut(s) 36
FaiI YATR 4 cut(s) 34, 273, 306, 620
FalI AAGNNNNNCTT 2 cut(s) 434, 466
FaqI GGGAC 2 cut(s) 252, 507
FatI CATG 1 cut(s) 32
FauI CCCGC 1 cut(s) 334
Fnu4HI GCNGC 8 cut(s) 300, 348, 375, 542, 594, 678, 681, 684
FokI GGATG 3 cut(s) 428, 516, 538
FriOI GRGCYC 2 cut(s) 44, 61
Fsp4HI GCNGC 8 cut(s) 300, 348, 375, 542, 594, 678, 681, 684
FspBI CTAG 2 cut(s) 26, 401
GlaI GCGC 2 cut(s) 278, 280
GluI GCNGC 8 cut(s) 300, 348, 375, 542, 594, 678, 681, 684
GsaI CCCAGC 1 cut(s) 534
HaeIII GGCC 3 cut(s) 37, 239, 246
HapII CCGG 3 cut(s) 149, 167, 563
HgaI GACGC 1 cut(s) 568
HhaI GCGC 2 cut(s) 279, 281
Hin1I GRCGYC 1 cut(s) 560
Hin1II CATG 1 cut(s) 36
Hin6I GCGC 2 cut(s) 277, 279
HinP1I GCGC 2 cut(s) 277, 279
HindIII AAGCTT 2 cut(s) 20, 635
HinfI GANTC 2 cut(s) 200, 291
HpaII CCGG 3 cut(s) 149, 167, 563
HphI GGTGA 1 cut(s) 368
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 1 cut(s) 63
Hpy8I GTNNAC 1 cut(s) 154
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 3 cut(s) 270, 364, 389
HpyCH4V TGCA 4 cut(s) 103, 419, 485, 683
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 371, 602, 683
HpyF3I CTNAG 5 cut(s) 6, 509, 519, 642, 687
Hsp92I GRCGYC 1 cut(s) 560
Hsp92II CATG 1 cut(s) 36
HspAI GCGC 2 cut(s) 277, 279
Kzo9I GATC 3 cut(s) 460, 534, 598
LmnI GCTCC 1 cut(s) 29
Lsp1109I GCAGC 7 cut(s) 286, 334, 386, 528, 580, 664, 667
LweI GCATC 2 cut(s) 348, 406
MaeI CTAG 2 cut(s) 26, 401
MaeIII GTNAC 1 cut(s) 514
MalI GATC 3 cut(s) 462, 536, 600
MboI GATC 3 cut(s) 460, 534, 598
MflI RGATCY 1 cut(s) 598
MhlI GDGCHC 2 cut(s) 44, 61
MluCI AATT 1 cut(s) 668
MmeI TCCRAC 1 cut(s) 390
MnlI CCTC 6 cut(s) 48, 223, 250, 355, 406, 514
Mph1103I ATGCAT 1 cut(s) 421
MroXI GAANNNNTTC 1 cut(s) 320
MseI TTAA 2 cut(s) 546, 671
MspI CCGG 3 cut(s) 149, 167, 563
MspR9I CCNGG 3 cut(s) 149, 167, 564
MvnI CGCG 2 cut(s) 279, 329
MwoI GCNNNNNNNGC 4 cut(s) 65, 371, 602, 683
NciI CCSGG 3 cut(s) 149, 167, 564
NdeII GATC 3 cut(s) 460, 534, 598
NlaIII CATG 1 cut(s) 36
NlaIV GGNNCC 4 cut(s) 117, 268, 323, 600
NmeAIII GCCGAG 1 cut(s) 63
NmuCI GTSAC 1 cut(s) 514
NsiI ATGCAT 1 cut(s) 421
PauI GCGCGC 1 cut(s) 277
PdmI GAANNNNTTC 1 cut(s) 320
PfeI GAWTC 2 cut(s) 200, 291
PflMI CCANNNNNTGG 1 cut(s) 294
PkrI GCNGC 8 cut(s) 301, 349, 376, 543, 595, 679, 682, 685
PspFI CCCAGC 1 cut(s) 530
PspN4I GGNNCC 4 cut(s) 117, 268, 323, 600
PspPI GGNCC 3 cut(s) 237, 245, 266
PstI CTGCAG 2 cut(s) 105, 685
PstNI CAGNNNCTG 1 cut(s) 294
PsuI RGATCY 1 cut(s) 598
PteI GCGCGC 1 cut(s) 277
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
SaqAI TTAA 2 cut(s) 546, 671
SatI GCNGC 8 cut(s) 300, 348, 375, 542, 594, 678, 681, 684
Sau3AI GATC 3 cut(s) 460, 534, 598
Sau96I GGNCC 3 cut(s) 237, 245, 266
ScrFI CCNGG 3 cut(s) 149, 167, 564
SduI GDGCHC 2 cut(s) 44, 61
SfaNI GCATC 2 cut(s) 348, 406
SfcI CTRYAG 2 cut(s) 101, 681
SinI GGWCC 1 cut(s) 266
SmlI CTYRAG 1 cut(s) 351
SmoI CTYRAG 1 cut(s) 351
Sse9I AATT 1 cut(s) 668
SsiI CCGC 3 cut(s) 327, 456, 596
SspMI CTAG 2 cut(s) 26, 401
StyD4I CCNGG 3 cut(s) 147, 165, 562
TaqI TCGA 3 cut(s) 87, 143, 225
TasI AATT 1 cut(s) 668
TfiI GAWTC 2 cut(s) 200, 291
Tru1I TTAA 2 cut(s) 546, 671
Tru9I TTAA 2 cut(s) 546, 671
TseFI GTSAC 1 cut(s) 514
TseI GCWGC 8 cut(s) 299, 347, 374, 541, 593, 677, 680, 683
Tsp45I GTSAC 1 cut(s) 514
TspDTI ATGAA 1 cut(s) 347
Van91I CCANNNNNTGG 1 cut(s) 294
VpaK11BI GGWCC 1 cut(s) 266
XmnI GAANNNNTTC 1 cut(s) 320
XspI CTAG 2 cut(s) 26, 401
Zsp2I ATGCAT 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.