Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002466

Physical Location & Seq

Genomic Coordinates Forward (+)

80965358 .. 80965960

Gene Structure 603 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG521800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGTTCATTCTTGTCCATCAACTAGAATTTACACAGGAATGACAGTTTACACATTCACCAGCAATGGAAGCATGATCTTCCTTGACATTTCCTACAATTACTTGTCTGGGACTATTCCCGCAAACTTAGGTACACTGTCCTATTTGCAAGTCTTCAATCTAGGACACAATATGTTAAGTGGAAATATTCCAGAAAGCTTTGGAGGATTAAAAGCAATTGGAGTCCTGGATCTCTCTCACAATAATCTTCAAGGTTATATCCCAGGATCTTTGGGGACTCTCTCTTTCCTGAGTGACCTCGATGTGTCTAACAACAACCTCACCGGTACAATCCCTTCCGGAGGTCAGCTGACAACTTTCCCAGCATCCAGATATGAGAACAACTCCGGCCTTTGTGGCAGCATTCCCTTGCCAGCCTGTGGATATCAAAGACCTCTAGCAGAATCTGAAATTTTTCCTGAAAAAGAGAATACTGCTGTTTCAGGAATGGAAGTTGGTTATGTTTCTTTCATATTTTTCTTTGTGGTGACTGTGTCTCTTTCTTTGTTGACACCCTATCTCGACCTCCCATTCCGGATTCTCCTCAAGGGTTTTTCCCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase

Protein Analysis

200

Amino Acids

21.59

Weight (kDa)

5.19

Isoelectric Point (pI)

33.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	28 - 83	1.3e-08	Leucine rich repeat
LRR_8	PF13855	49 - 107	9.2e-08	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55610 AT1G55610 AT3G13380
fragaria_vesca	FvH4_3g41391 FvH4_3g41392 FvH4_3g41420
malus_domestica	MD03G1044500.v1.1 MD11G1047400.v1.1
prunus_persica	Prupe.6G036400_v2.0.a1
pyrus_communis	pycom03g03440 pycom11g03840
rosa_chinensis	RchiOBHm_Chr5g0074361 RchiOBHm_Chr5g0074371 RchiOBHm_Chr5g0074401
rosa_laevigata	RLG00000036471 RLG00000036472
rosa_multiflora	Rmu_sc0000573.1_g000010 Rmu_sc0000573.1_g000018 Rmu_sc0004706.1_g000021 Rmu_sc0027008.1_g000001 Rmu_sc0027009.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007140 Rroxscaffold_1G00007150
rosa_rugosa	Rorug05G0430600 Rorug05G0430700 Rorug05G0430800 Rorug05G0430800
rosa_samantha	Rh5AG488300 Rh5AG488500 Rh5BG509000 Rh5BG509100 Rh5BG509300 Rh5CG532900 Rh5CG533000 Rh5CG533100 Rh5DG521600 Rh5DG521700 Rh5DG521800 Rh5DG522000
rosa_wichuraiana	Rw5G045290 Rw5G045300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	419
AccIII	TCCGGA	2 cut(s)	338, 573
AciI	CCGC	2 cut(s)	120, 598
AclWI	GGATC	2 cut(s)	237, 274
AcsI	RAATTY	2 cut(s)	27, 450
AfaI	GTAC	2 cut(s)	133, 328
AfiI	CCNNNNNNNGG	2 cut(s)	341, 419
AgeI	ACCGGT	1 cut(s)	323
AgsI	TTSAA	2 cut(s)	157, 251
AjnI	CCWGG	2 cut(s)	225, 262
AluBI	AGCT	2 cut(s)	198, 349
AluI	AGCT	2 cut(s)	198, 349
Alw26I	GTCTC	1 cut(s)	540
AlwI	GGATC	2 cut(s)	237, 274
AlwNI	CAGNNNCTG	1 cut(s)	446
Aor13HI	TCCGGA	2 cut(s)	338, 573
AoxI	GGCC	1 cut(s)	388
ApeKI	GCWGC	1 cut(s)	399
ApoI	RAATTY	2 cut(s)	27, 450
AsiGI	ACCGGT	1 cut(s)	323
Asp700I	GAANNNNTTC	1 cut(s)	453
AsuHPI	GGTGA	3 cut(s)	49, 313, 538
BarI	GAAGNNNNNNTAC	2 cut(s)	319, 351
BbsI	GAAGAC	1 cut(s)	145
BbvI	GCAGC	1 cut(s)	411
BccI	CCATC	1 cut(s)	25
BciT130I	CCWGG	2 cut(s)	227, 264
BcoDI	GTCTC	1 cut(s)	540
BfaI	CTAG	4 cut(s)	24, 161, 437, 601
BglI	GCCNNNNNGGC	1 cut(s)	396
BisI	GCNGC	1 cut(s)	400
BlsI	GCNGC	1 cut(s)	401
Bme1390I	CCNGG	2 cut(s)	227, 264
BmrFI	CCNGG	2 cut(s)	227, 264
BmsI	GCATC	1 cut(s)	374
BpiI	GAAGAC	1 cut(s)	145
BplI	GAGNNNNNCTC	2 cut(s)	368, 400
BpuEI	CTTGAG	1 cut(s)	569
BsaJI	CCNNGG	1 cut(s)	262
BsaWI	WCCGGW	3 cut(s)	323, 338, 573
Bsc4I	CCNNNNNNNGG	2 cut(s)	341, 419
Bse118I	RCCGGY	1 cut(s)	323
Bse3DI	GCAATG	1 cut(s)	70
BseAI	TCCGGA	2 cut(s)	338, 573
BseBI	CCWGG	2 cut(s)	227, 264
BseDI	CCNNGG	1 cut(s)	262
BseGI	GGATG	1 cut(s)	365
BseLI	CCNNNNNNNGG	2 cut(s)	341, 419
BseMI	GCAATG	1 cut(s)	70
BseMII	CTCAG	1 cut(s)	281
BseRI	GAGGAG	1 cut(s)	572
BseXI	GCAGC	1 cut(s)	411
BseYI	CCCAGC	1 cut(s)	361
BshFI	GGCC	1 cut(s)	390
BshTI	ACCGGT	1 cut(s)	323
BsiSI	CCGG	4 cut(s)	324, 339, 387, 574
BslFI	GGGAC	2 cut(s)	124, 289
BslI	CCNNNNNNNGG	2 cut(s)	341, 419
BsmAI	GTCTC	1 cut(s)	540
BsmFI	GGGAC	2 cut(s)	124, 289
BsmI	GAATGC	1 cut(s)	402
BsnI	GGCC	1 cut(s)	390
Bsp13I	TCCGGA	2 cut(s)	338, 573
Bsp143I	GATC	3 cut(s)	75, 229, 266
BspACI	CCGC	2 cut(s)	120, 598
BspANI	GGCC	1 cut(s)	390
BspCNI	CTCAG	1 cut(s)	282
BspEI	TCCGGA	2 cut(s)	338, 573
BspPI	GGATC	2 cut(s)	237, 274
BsrDI	GCAATG	1 cut(s)	70
BsrFI	RCCGGY	1 cut(s)	323
BssAI	RCCGGY	1 cut(s)	323
BssECI	CCNNGG	1 cut(s)	262
BssMI	GATC	3 cut(s)	75, 229, 266
Bst2UI	CCWGG	2 cut(s)	227, 264
Bst4CI	ACNGT	3 cut(s)	46, 138, 532
BstC8I	GCNNGC	1 cut(s)	414
BstDEI	CTNAG	2 cut(s)	127, 290
BstENI	CCTNNNNNAGG	1 cut(s)	339
BstF5I	GGATG	1 cut(s)	365
BstKTI	GATC	3 cut(s)	78, 232, 269
BstMAI	GTCTC	1 cut(s)	540
BstMBI	GATC	3 cut(s)	75, 229, 266
BstMWI	GCNNNNNNNGC	2 cut(s)	69, 396
BstNI	CCWGG	2 cut(s)	227, 264
BstSCI	CCNGG	2 cut(s)	225, 262
BstV1I	GCAGC	1 cut(s)	411
BstV2I	GAAGAC	1 cut(s)	145
BstX2I	RGATCY	2 cut(s)	229, 266
BstYI	RGATCY	2 cut(s)	229, 266
BsuRI	GGCC	1 cut(s)	390
BtsCI	GGATG	1 cut(s)	365
BtsIMutI	CAGTG	1 cut(s)	134
Cac8I	GCNNGC	1 cut(s)	414
CaiI	CAGNNNCTG	1 cut(s)	446
Cfr10I	RCCGGY	1 cut(s)	323
Csp6I	GTAC	2 cut(s)	132, 327
CspAI	ACCGGT	1 cut(s)	323
CviAII	CATG	1 cut(s)	73
CviJI	RGCY	4 cut(s)	198, 349, 390, 416
CviKI_1	RGCY	4 cut(s)	198, 349, 390, 416
CviQI	GTAC	2 cut(s)	132, 327
DdeI	CTNAG	2 cut(s)	127, 290
DpnI	GATC	3 cut(s)	77, 231, 268
DpnII	GATC	3 cut(s)	75, 229, 266
Eco32I	GATATC	1 cut(s)	425
EcoNI	CCTNNNNNAGG	1 cut(s)	339
EcoRII	CCWGG	2 cut(s)	225, 262
EcoRV	GATATC	1 cut(s)	425
FaeI	CATG	1 cut(s)	76
FaiI	YATR	6 cut(s)	74, 173, 258, 375, 501, 512
FaqI	GGGAC	2 cut(s)	124, 289
FatI	CATG	1 cut(s)	72
FauI	CCCGC	1 cut(s)	127
Fnu4HI	GCNGC	1 cut(s)	400
FokI	GGATG	1 cut(s)	352
Fsp4HI	GCNGC	1 cut(s)	400
FspBI	CTAG	4 cut(s)	24, 161, 437, 601
GluI	GCNGC	1 cut(s)	400
GsaI	CCCAGC	1 cut(s)	365
HaeIII	GGCC	1 cut(s)	390
HapII	CCGG	4 cut(s)	324, 339, 387, 574
Hin1II	CATG	1 cut(s)	76
HincII	GTYRAC	1 cut(s)	549
HindII	GTYRAC	1 cut(s)	549
HindIII	AAGCTT	1 cut(s)	196
HinfI	GANTC	4 cut(s)	222, 277, 443, 577
HpaII	CCGG	4 cut(s)	324, 339, 387, 574
HphI	GGTGA	3 cut(s)	49, 313, 538
Hpy166II	GTNNAC	3 cut(s)	49, 134, 549
Hpy188I	TCNGA	1 cut(s)	448
Hpy188III	TCNNGA	8 cut(s)	191, 289, 339, 369, 458, 483, 560, 574
Hpy8I	GTNNAC	3 cut(s)	49, 134, 549
HpyAV	CCTTC	1 cut(s)	345
HpyCH4III	ACNGT	3 cut(s)	46, 138, 532
HpyCH4V	TGCA	1 cut(s)	148
HpyF10VI	GCNNNNNNNGC	2 cut(s)	69, 396
HpyF3I	CTNAG	2 cut(s)	127, 290
Hsp92II	CATG	1 cut(s)	76
Kpn2I	TCCGGA	2 cut(s)	338, 573
Kzo9I	GATC	3 cut(s)	75, 229, 266
Lsp1109I	GCAGC	1 cut(s)	411
LweI	GCATC	1 cut(s)	374
MaeI	CTAG	4 cut(s)	24, 161, 437, 601
MaeIII	GTNAC	2 cut(s)	293, 526
MalI	GATC	3 cut(s)	77, 231, 268
MboI	GATC	3 cut(s)	75, 229, 266
MboII	GAAGA	3 cut(s)	70, 145, 239
MfeI	CAATTG	1 cut(s)	216
MflI	RGATCY	2 cut(s)	229, 266
MluCI	AATT	4 cut(s)	27, 97, 216, 450
MlyI	GAGTC	2 cut(s)	231, 271
MnlI	CCTC	7 cut(s)	197, 308, 329, 335, 444, 575, 593
MroI	TCCGGA	2 cut(s)	338, 573
MroXI	GAANNNNTTC	1 cut(s)	453
MseI	TTAA	2 cut(s)	176, 209
MslI	CAYNNNNRTG	1 cut(s)	38
MspA1I	CMGCKG	1 cut(s)	349
MspI	CCGG	4 cut(s)	324, 339, 387, 574
MspR9I	CCNGG	2 cut(s)	227, 264
MunI	CAATTG	1 cut(s)	216
Mva1269I	GAATGC	1 cut(s)	402
MvaI	CCWGG	2 cut(s)	227, 264
MwoI	GCNNNNNNNGC	2 cut(s)	69, 396
NdeII	GATC	3 cut(s)	75, 229, 266
NlaIII	CATG	1 cut(s)	76
NmuCI	GTSAC	2 cut(s)	293, 526
PctI	GAATGC	1 cut(s)	402
PdmI	GAANNNNTTC	1 cut(s)	453
PfeI	GAWTC	2 cut(s)	443, 577
PflFI	GACNNNGTC	1 cut(s)	532
PflMI	CCANNNNNTGG	1 cut(s)	419
PfoI	TCCNGGA	1 cut(s)	225
PinAI	ACCGGT	1 cut(s)	323
PkrI	GCNGC	1 cut(s)	401
PleI	GAGTC	2 cut(s)	230, 271
PpsI	GAGTC	2 cut(s)	230, 271
Psp6I	CCWGG	2 cut(s)	225, 262
PspFI	CCCAGC	1 cut(s)	361
PspGI	CCWGG	2 cut(s)	225, 262
PstNI	CAGNNNCTG	1 cut(s)	446
PsuI	RGATCY	2 cut(s)	229, 266
PsyI	GACNNNGTC	1 cut(s)	532
PvuII	CAGCTG	1 cut(s)	349
RsaI	GTAC	2 cut(s)	133, 328
RsaNI	GTAC	2 cut(s)	132, 327
RseI	CAYNNNNRTG	1 cut(s)	38
SaqAI	TTAA	2 cut(s)	176, 209
SatI	GCNGC	1 cut(s)	400
Sau3AI	GATC	3 cut(s)	75, 229, 266
SchI	GAGTC	2 cut(s)	231, 271
ScrFI	CCNGG	2 cut(s)	227, 264
SetI	ASST	9 cut(s)	133, 200, 256, 300, 321, 346, 351, 436, 567
SfaNI	GCATC	1 cut(s)	374
SmiMI	CAYNNNNRTG	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	4 cut(s)	27, 97, 216, 450
SsiI	CCGC	2 cut(s)	120, 598
SspI	AATATT	1 cut(s)	187
SspMI	CTAG	4 cut(s)	24, 161, 437, 601
StyD4I	CCNGG	2 cut(s)	225, 262
TaaI	ACNGT	3 cut(s)	46, 138, 532
TaqI	TCGA	2 cut(s)	300, 561
TasI	AATT	4 cut(s)	27, 97, 216, 450
TfiI	GAWTC	2 cut(s)	443, 577
Tru1I	TTAA	2 cut(s)	176, 209
Tru9I	TTAA	2 cut(s)	176, 209
TscAI	CASTG	1 cut(s)	141
TseFI	GTSAC	2 cut(s)	293, 526
TseI	GCWGC	1 cut(s)	399
Tsp45I	GTSAC	2 cut(s)	293, 526
TspDTI	ATGAA	1 cut(s)	499
TspRI	CASTG	1 cut(s)	141
Tth111I	GACNNNGTC	1 cut(s)	532
Van91I	CCANNNNNTGG	1 cut(s)	419
XagI	CCTNNNNNAGG	1 cut(s)	339
XapI	RAATTY	2 cut(s)	27, 450
XmnI	GAANNNNTTC	1 cut(s)	453
XspI	CTAG	4 cut(s)	24, 161, 437, 601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.