Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002466

Physical Location & Seq

Genomic Coordinates Forward (+)

80290916 .. 80292378

Gene Structure 1463 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34917

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGGGTTTGTTCTGTTTTTTTGTTCTGCTTCTCTTTCACTCTCTAAATTTTACTTCAGCTGCTTCTAATGAGGATGTGGTGAAGAAGCTTTTGTTGCAATTCAAGCAATCCTCTGTTCAATCTGATCCTCATGGCCTGACTTGCTCTGAAGGCCACGTCATCACCCTTGACCTCTCCTATTCTGGTCTCATTGGAAGTCATCACCTTCCAACTCTCACAGCCTTGCCAAGTCTTCAAAATCTGTACTTGCAAGGCAATTCATTCTCTGCTTCTGATCTTTCAGTTTCCAACATTTCCACATGTTGTCTTGTAACAGTTGACTTGTCCTCCAACAACATCACAAGCCCTCTTCCGGTTCGGTCTTTTCTTGAGGGTTGTGAGAATCTGGCTTTGGTCAACCTCTCTGGCAATTCAATCCCAGGAGGGAGTTTCAGCTTTGGTGCTTCCTTGCTTCAGCTTGACATCTCTAGAAACCTGATTTCGGATTCATCCTTGTTGACTTGCCAGAATCTGAATCTGCTCAATGTTTCCGGTTACAAGCTGACCGGAAAACAGAGTGATTCTATCTTGTCTTGCAAGAATCTGACAACACTTGACCTTTCATACAATGCTTTATCTGGGGAGATACCCAACACTATCCTGGAAAGTGGCTCTGCATCACTCAAGTATTTGGATCTCTCAAGCAACAATTTCACTGGAAAGTTTGCAAGCCTTGATTTCGGGCAGTGTAGCAGCCTCACGTTGCTGAAGCTATCACACAATAATCTCTATGGGGATGAGTTTCCTTCAAGCCTTGCTAACTGTCAAGCTTTGGAGACACTGAACCTGACTAGTAATAAGTTGCAGGACAAGATTCCGGGTGCTTTGTTGGGAAATCTCAATAAGTTGAGGCAACTCTTTCTGGGTCGCAATCAGTTTTCGGGTGAAATTCCAGCCGAATTAGGAAAGGCTTGTGGGACACTTCAGGAGCTTGATATTTCTGATAACATTCTTACTGGTGAATTGCCCTCAAGTTTTGTGTCGTGCTCTTCTTTGGTTAGTCTCAATCTTGGTCGCAATCAGCTCTCAGGAAATTTCCTCAGTACTGTTGTGAGTAAGCTTCCGAGTTTGAGATATCTCTATGTACCCTTCAACAACATCACTGGTCCTGTGCCACCATCTATTACCAATGGTACTCGGCTTCAAGTGCTCGACCTCAGTGCTAATCTCTTCACAGGGAATGTTCCTTCAGTGTTTTGCTTCTCCAATGCTCCCTCAGCTTTGGAAAAGATACTTCTAGCTAACAATTTTCTCTCCGGGACTGTGCCATCGGAACTTGGAAACTGCAAGAGCCTGAAGGCCATTGATCTGAGTTTCAACAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase

Protein Analysis

454

Amino Acids

48.41

Weight (kDa)

5.38

Isoelectric Point (pI)

39.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_4	PF12799	193 - 238	3.9e-06	Leucine Rich repeats (2 copies)
LRR_14	PF23598	263 - 352	3.7e-07	Leucine-rich repeat region
LRR_8	PF13855	320 - 380	2.1e-08	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55610 AT1G55610 AT3G13380
fragaria_vesca	FvH4_3g41391 FvH4_3g41392 FvH4_3g41420
malus_domestica	MD03G1044500.v1.1 MD11G1047400.v1.1
prunus_persica	Prupe.6G036400_v2.0.a1
pyrus_communis	pycom03g03440 pycom11g03840
rosa_chinensis	RchiOBHm_Chr5g0074361 RchiOBHm_Chr5g0074371 RchiOBHm_Chr5g0074401
rosa_laevigata	RLG00000036471 RLG00000036472
rosa_multiflora	Rmu_sc0000573.1_g000010 Rmu_sc0000573.1_g000018 Rmu_sc0004706.1_g000021 Rmu_sc0027008.1_g000001 Rmu_sc0027009.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007140 Rroxscaffold_1G00007150
rosa_rugosa	Rorug05G0430600 Rorug05G0430700 Rorug05G0430800 Rorug05G0430800
rosa_samantha	Rh5AG488300 Rh5AG488500 Rh5BG509000 Rh5BG509100 Rh5BG509300 Rh5CG532900 Rh5CG533000 Rh5CG533100 Rh5DG521600 Rh5DG521700 Rh5DG521800 Rh5DG522000
rosa_wichuraiana	Rw5G045290 Rw5G045300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	119, 681
AcsI	RAATTY	3 cut(s)	46, 927, 1072
AcuI	CTGAAG	7 cut(s)	39, 168, 437, 767, 947, 1212, 1355
AfaI	GTAC	4 cut(s)	245, 1084, 1125, 1174
AfiI	CCNNNNNNNGG	2 cut(s)	352, 481
AflIII	ACRYGT	1 cut(s)	299
AgsI	TTSAA	8 cut(s)	103, 119, 236, 414, 789, 1132, 1184, 1357
AhlI	ACTAGT	1 cut(s)	830
AjiI	CACGTC	1 cut(s)	157
AjnI	CCWGG	2 cut(s)	418, 639
AjuI	GAANNNNNNNTTGG	2 cut(s)	374, 406
Alw21I	GWGCWC	2 cut(s)	1028, 1191
Alw26I	GTCTC	3 cut(s)	191, 809, 1046
AlwI	GGATC	2 cut(s)	119, 681
AlwNI	CAGNNNCTG	1 cut(s)	511
AoxI	GGCC	3 cut(s)	133, 151, 1338
ApeKI	GCWGC	2 cut(s)	59, 732
ApoI	RAATTY	3 cut(s)	46, 927, 1072
AspS9I	GGNCC	1 cut(s)	1145
AsuC2I	CCSGG	2 cut(s)	858, 1297
AsuHPI	GGTGA	5 cut(s)	91, 154, 194, 935, 1010
AvaII	GGWCC	1 cut(s)	1145
BbsI	GAAGAC	1 cut(s)	224
Bbv12I	GWGCWC	2 cut(s)	1028, 1191
BbvCI	CCTCAGC	1 cut(s)	1255
BbvI	GCAGC	2 cut(s)	46, 744
BccI	CCATC	2 cut(s)	1165, 1315
BcgI	CGANNNNNNTGC	2 cut(s)	1181, 1215
BciT130I	CCWGG	2 cut(s)	420, 641
BcnI	CCSGG	2 cut(s)	858, 1297
BcoDI	GTCTC	3 cut(s)	191, 809, 1046
BcuI	ACTAGT	1 cut(s)	830
BfaI	CTAG	3 cut(s)	468, 831, 1277
BisI	GCNGC	2 cut(s)	60, 733
BlsI	GCNGC	2 cut(s)	61, 734
BmcAI	AGTACT	1 cut(s)	1084
Bme1390I	CCNGG	4 cut(s)	420, 641, 858, 1297
Bme18I	GGWCC	1 cut(s)	1145
BmgBI	CACGTC	1 cut(s)	157
BmgT120I	GGNCC	1 cut(s)	1145
BmrFI	CCNGG	4 cut(s)	420, 641, 858, 1297
BmsI	GCATC	1 cut(s)	665
BpiI	GAAGAC	1 cut(s)	224
Bpu10I	CCTNAGC	1 cut(s)	1255
BpuEI	CTTGAG	4 cut(s)	389, 647, 664, 994
BpuMI	CCSGG	2 cut(s)	858, 1297
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	418
BsaWI	WCCGGW	3 cut(s)	352, 530, 545
BsaXI	ACNNNNNCTCC	2 cut(s)	311, 341
Bsc4I	CCNNNNNNNGG	2 cut(s)	352, 481
Bse1I	ACTGG	3 cut(s)	700, 1000, 1147
BseBI	CCWGG	2 cut(s)	420, 641
BseDI	CCNNGG	1 cut(s)	418
BseGI	GGATG	3 cut(s)	79, 488, 781
BseLI	CCNNNNNNNGG	2 cut(s)	352, 481
BseMII	CTCAG	5 cut(s)	1080, 1093, 1210, 1269, 1340
BseNI	ACTGG	3 cut(s)	700, 1000, 1147
BseXI	GCAGC	2 cut(s)	46, 744
BshFI	GGCC	3 cut(s)	135, 153, 1340
BsiHKAI	GWGCWC	2 cut(s)	1028, 1191
BsiSI	CCGG	5 cut(s)	353, 531, 546, 857, 1296
BslFI	GGGAC	2 cut(s)	970, 1312
BslI	CCNNNNNNNGG	2 cut(s)	352, 481
BsmAI	GTCTC	3 cut(s)	191, 809, 1046
BsmFI	GGGAC	2 cut(s)	970, 1312
BsnI	GGCC	3 cut(s)	135, 153, 1340
Bso31I	GGTCTC	1 cut(s)	191
Bsp1286I	GDGCHC	2 cut(s)	1028, 1191
Bsp143I	GATC	4 cut(s)	124, 274, 673, 1345
BspANI	GGCC	3 cut(s)	135, 153, 1340
BspCNI	CTCAG	5 cut(s)	1079, 1092, 1209, 1268, 1341
BspPI	GGATC	2 cut(s)	119, 681
BspQI	GCTCTTC	1 cut(s)	1033
BspTNI	GGTCTC	1 cut(s)	191
BsrI	ACTGG	3 cut(s)	700, 1000, 1147
BssECI	CCNNGG	1 cut(s)	418
BssMI	GATC	4 cut(s)	124, 274, 673, 1345
Bst2UI	CCWGG	2 cut(s)	420, 641
Bst4CI	ACNGT	5 cut(s)	316, 803, 1087, 1303, 1361
Bst6I	CTCTTC	3 cut(s)	354, 1033, 1214
BstC8I	GCNNGC	1 cut(s)	709
BstDEI	CTNAG	5 cut(s)	1066, 1079, 1196, 1255, 1349
BstF5I	GGATG	3 cut(s)	79, 488, 781
BstKTI	GATC	4 cut(s)	127, 277, 676, 1348
BstMAI	GTCTC	3 cut(s)	191, 809, 1046
BstMBI	GATC	4 cut(s)	124, 274, 673, 1345
BstMWI	GCNNNNNNNGC	6 cut(s)	94, 103, 141, 150, 1186, 1256
BstNI	CCWGG	2 cut(s)	420, 641
BstNSI	RCATGY	1 cut(s)	303
BstSCI	CCNGG	4 cut(s)	418, 639, 856, 1295
BstV1I	GCAGC	2 cut(s)	46, 744
BstV2I	GAAGAC	1 cut(s)	224
BstX2I	RGATCY	1 cut(s)	673
BstYI	RGATCY	1 cut(s)	673
BsuRI	GGCC	3 cut(s)	135, 153, 1340
BtrI	CACGTC	1 cut(s)	157
BtsCI	GGATG	3 cut(s)	79, 488, 781
BtsI	GCAGTG	1 cut(s)	731
BtsIMutI	CAGTG	6 cut(s)	693, 731, 818, 1140, 1204, 1236
Cac8I	GCNNGC	1 cut(s)	709
CaiI	CAGNNNCTG	1 cut(s)	511
Cfr13I	GGNCC	1 cut(s)	1145
Csp6I	GTAC	4 cut(s)	244, 1083, 1124, 1173
CviAII	CATG	2 cut(s)	131, 300
CviQI	GTAC	4 cut(s)	244, 1083, 1124, 1173
DdeI	CTNAG	5 cut(s)	1066, 1079, 1196, 1255, 1349
DpnI	GATC	4 cut(s)	126, 276, 675, 1347
DpnII	GATC	4 cut(s)	124, 274, 673, 1345
Eam1104I	CTCTTC	3 cut(s)	354, 1033, 1214
EarI	CTCTTC	3 cut(s)	354, 1033, 1214
Eco31I	GGTCTC	1 cut(s)	191
Eco32I	GATATC	1 cut(s)	1115
Eco47I	GGWCC	1 cut(s)	1145
Eco57I	CTGAAG	7 cut(s)	39, 168, 437, 767, 947, 1212, 1355
EcoRII	CCWGG	2 cut(s)	418, 639
EcoRV	GATATC	1 cut(s)	1115
FaeI	CATG	2 cut(s)	134, 303
FaiI	YATR	5 cut(s)	132, 301, 604, 771, 1122
FaqI	GGGAC	2 cut(s)	970, 1312
FatI	CATG	2 cut(s)	130, 299
Fnu4HI	GCNGC	2 cut(s)	60, 733
FokI	GGATG	3 cut(s)	86, 475, 788
Fsp4HI	GCNGC	2 cut(s)	60, 733
FspBI	CTAG	3 cut(s)	468, 831, 1277
GluI	GCNGC	2 cut(s)	60, 733
HaeIII	GGCC	3 cut(s)	135, 153, 1340
HapII	CCGG	5 cut(s)	353, 531, 546, 857, 1296
Hin1II	CATG	2 cut(s)	134, 303
HincII	GTYRAC	3 cut(s)	319, 397, 498
HindII	GTYRAC	3 cut(s)	319, 397, 498
HindIII	AAGCTT	3 cut(s)	86, 807, 1097
HinfI	GANTC	7 cut(s)	382, 485, 508, 514, 560, 580, 853
HpaII	CCGG	5 cut(s)	353, 531, 546, 857, 1296
HphI	GGTGA	5 cut(s)	91, 154, 194, 935, 1010
Hpy166II	GTNNAC	3 cut(s)	319, 397, 498
Hpy188III	TCNNGA	4 cut(s)	368, 468, 965, 1068
Hpy8I	GTNNAC	3 cut(s)	319, 397, 498
HpyAV	CCTTC	6 cut(s)	143, 215, 795, 1138, 1236, 1330
HpyCH4III	ACNGT	5 cut(s)	316, 803, 1087, 1303, 1361
HpyCH4IV	ACGT	2 cut(s)	156, 740
HpyCH4V	TGCA	7 cut(s)	97, 250, 576, 656, 707, 844, 1326
HpyF10VI	GCNNNNNNNGC	6 cut(s)	94, 103, 141, 150, 1186, 1256
HpyF3I	CTNAG	5 cut(s)	1066, 1079, 1196, 1255, 1349
HpySE526I	ACGT	2 cut(s)	156, 740
Hsp92II	CATG	2 cut(s)	134, 303
Kzo9I	GATC	4 cut(s)	124, 274, 673, 1345
LguI	GCTCTTC	1 cut(s)	1033
LmnI	GCTCC	2 cut(s)	967, 1255
Lsp1109I	GCAGC	2 cut(s)	46, 744
LweI	GCATC	1 cut(s)	665
MaeI	CTAG	3 cut(s)	468, 831, 1277
MaeII	ACGT	2 cut(s)	156, 740
MaeIII	GTNAC	2 cut(s)	310, 533
MalI	GATC	4 cut(s)	126, 276, 675, 1347
MboI	GATC	4 cut(s)	124, 274, 673, 1345
MboII	GAAGA	5 cut(s)	94, 224, 341, 1020, 1201
MflI	RGATCY	1 cut(s)	673
MhlI	GDGCHC	2 cut(s)	1028, 1191
MmeI	TCCRAC	3 cut(s)	233, 312, 354
MspA1I	CMGCKG	1 cut(s)	59
MspI	CCGG	5 cut(s)	353, 531, 546, 857, 1296
MspR9I	CCNGG	4 cut(s)	420, 641, 858, 1297
MvaI	CCWGG	2 cut(s)	420, 641
MwoI	GCNNNNNNNGC	6 cut(s)	94, 103, 141, 150, 1186, 1256
NciI	CCSGG	2 cut(s)	858, 1297
NdeII	GATC	4 cut(s)	124, 274, 673, 1345
NlaIII	CATG	2 cut(s)	134, 303
NmeAIII	GCCGAG	1 cut(s)	1156
NspI	RCATGY	1 cut(s)	303
PciI	ACATGT	1 cut(s)	299
PciSI	GCTCTTC	1 cut(s)	1033
PfeI	GAWTC	7 cut(s)	382, 485, 508, 514, 560, 580, 853
PfoI	TCCNGGA	2 cut(s)	639, 1295
PkrI	GCNGC	2 cut(s)	61, 734
PscI	ACATGT	1 cut(s)	299
Psp6I	CCWGG	2 cut(s)	418, 639
PspGI	CCWGG	2 cut(s)	418, 639
PspPI	GGNCC	1 cut(s)	1145
PstNI	CAGNNNCTG	1 cut(s)	511
PsuI	RGATCY	1 cut(s)	673
PvuII	CAGCTG	1 cut(s)	59
RsaI	GTAC	4 cut(s)	245, 1084, 1125, 1174
RsaNI	GTAC	4 cut(s)	244, 1083, 1124, 1173
SapI	GCTCTTC	1 cut(s)	1033
SatI	GCNGC	2 cut(s)	60, 733
Sau3AI	GATC	4 cut(s)	124, 274, 673, 1345
Sau96I	GGNCC	1 cut(s)	1145
ScaI	AGTACT	1 cut(s)	1084
ScrFI	CCNGG	4 cut(s)	420, 641, 858, 1297
SduI	GDGCHC	2 cut(s)	1028, 1191
SfaNI	GCATC	1 cut(s)	665
SinI	GGWCC	1 cut(s)	1145
SmlI	CTYRAG	4 cut(s)	368, 662, 679, 1009
SmoI	CTYRAG	4 cut(s)	368, 662, 679, 1009
SpeI	ACTAGT	1 cut(s)	830
SspMI	CTAG	3 cut(s)	468, 831, 1277
StyD4I	CCNGG	4 cut(s)	418, 639, 856, 1295
TaaI	ACNGT	5 cut(s)	316, 803, 1087, 1303, 1361
TaiI	ACGT	2 cut(s)	159, 743
TaqI	TCGA	1 cut(s)	1191
TaqII	GACCGA	1 cut(s)	348
TatI	WGTACW	2 cut(s)	243, 1082
TfiI	GAWTC	7 cut(s)	382, 485, 508, 514, 560, 580, 853
TscAI	CASTG	6 cut(s)	700, 731, 825, 1147, 1204, 1236
TseI	GCWGC	2 cut(s)	59, 732
TspDTI	ATGAA	3 cut(s)	249, 477, 591
TspRI	CASTG	6 cut(s)	700, 731, 825, 1147, 1204, 1236
VpaK11BI	GGWCC	1 cut(s)	1145
XapI	RAATTY	3 cut(s)	46, 927, 1072
XbaI	TCTAGA	1 cut(s)	467
XceI	RCATGY	1 cut(s)	303
XcmI	CCANNNNNNNNNTGG	1 cut(s)	637
XspI	CTAG	3 cut(s)	468, 831, 1277
ZrmI	AGTACT	1 cut(s)	1084

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.