Rmu_sc0027008.1_g000001
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0027008.1
OG0002466
Physical Location & Seq
Forward (+)
1 .. 573
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0027008.1_g000001.1.cds

Sequence Viewer

Length: 573 bp
agattccggcgtggatcggcaagcttccgaagctggcaatactgaagctgagtaacaactcattctatgggaacattcccctggagctgggggactgtaagagcttgatatggttggatctcaatactaacttgctgaatggtacaatccctcctgggcttttcaaacagtctggcaacattgcggtgaattttgttgcttccaagacgtttgtgtatatcaagaataatggaagcaaggagtgccatggagcagggaatttgctcgagtttgcggggataagacaagagcaattgaccaggatttccaccaggaacccctgcaacttcactagagtgtatagaggtattctccaaccaacgtttaatcacaatgggaccatgatttttcttgatatgtcacacaataggttgtcgggtagcattccgaaagagattgggagtatgtactatctctatattctgaatctgggccataataacatatctggagcaatcccactagagcttgggaaattgaaggaccttaacattcttgatctctctagcaacagccttgatggaagtattcctc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000226 GO:0001578 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005496 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009314 GO:0009411 GO:0009416 GO:0009555 GO:0009593 GO:0009628 GO:0009642 GO:0009646 GO:0009647 GO:0009653 GO:0009719 GO:0009720 GO:0009725 GO:0009726 GO:0009729 GO:0009741 GO:0009742 GO:0009755 GO:0009791 GO:0009908 GO:0009909 GO:0009911 GO:0009987 GO:0010008 GO:0010033 GO:0010208 GO:0010224 GO:0010268 GO:0010584 GO:0010927 GO:0010941 GO:0012505 GO:0014070 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022607 GO:0023052 GO:0030154 GO:0030198 GO:0031090 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0036211 GO:0042221 GO:0042592 GO:0042802 GO:0042803 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043401 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046982 GO:0046983 GO:0048229 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048518 GO:0048519 GO:0048523 GO:0048545 GO:0048580 GO:0048582 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051606 GO:0051716 GO:0055088 GO:0060548 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071840 GO:0071944 GO:0085029 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0097708 GO:0098588 GO:0098805 GO:0099402 GO:0140096 GO:1900140 GO:1901564 GO:1901700 GO:1901701 GO:1905392 GO:1905393 GO:2000026 GO:2000241 GO:2000243
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase

Protein Analysis

190

Amino Acids

20.93

Weight (kDa)

9.18

Isoelectric Point (pI)

35.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 184, 274
AclI AACGTT 1 cut(s) 361
AclWI GGATC 2 cut(s) 22, 125
AcsI RAATTY 2 cut(s) 189, 258
AcuI CTGAAG 1 cut(s) 64
AfaI GTAC 2 cut(s) 144, 448
AfiI CCNNNNNNNGG 1 cut(s) 87
AgsI TTSAA 2 cut(s) 165, 519
AjnI CCWGG 4 cut(s) 80, 153, 298, 310
AleI CACNNNNGTG 1 cut(s) 334
AluBI AGCT 6 cut(s) 24, 33, 48, 87, 104, 507
AluI AGCT 6 cut(s) 24, 33, 48, 87, 104, 507
AlwI GGATC 2 cut(s) 22, 125
Ama87I CYCGRG 1 cut(s) 265
AoxI GGCC 1 cut(s) 471
ApoI RAATTY 2 cut(s) 189, 258
AspS9I GGNCC 3 cut(s) 377, 471, 522
AsuHPI GGTGA 1 cut(s) 198
AvaI CYCGRG 1 cut(s) 265
AvaII GGWCC 2 cut(s) 377, 522
BccI CCATC 1 cut(s) 553
BciT130I CCWGG 4 cut(s) 82, 155, 300, 312
BfaI CTAG 3 cut(s) 332, 502, 545
Bme1390I CCNGG 4 cut(s) 82, 155, 300, 312
Bme18I GGWCC 2 cut(s) 377, 522
BmeT110I CYCGRG 1 cut(s) 265
BmgT120I GGNCC 3 cut(s) 377, 471, 522
BmiI GGNNCC 2 cut(s) 316, 378
BmrFI CCNGG 4 cut(s) 82, 155, 300, 312
BplI GAGNNNNNCTC 2 cut(s) 335, 367
BpmI CTGGAG 2 cut(s) 103, 509
BsaJI CCNNGG 3 cut(s) 80, 154, 246
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
Bsc4I CCNNNNNNNGG 1 cut(s) 87
Bse3DI GCAATG 1 cut(s) 179
BseBI CCWGG 4 cut(s) 82, 155, 300, 312
BseDI CCNNGG 3 cut(s) 80, 154, 246
BseLI CCNNNNNNNGG 1 cut(s) 87
BseMI GCAATG 1 cut(s) 179
BseMII CTCAG 1 cut(s) 40
BseYI CCCAGC 1 cut(s) 87
BshFI GGCC 1 cut(s) 473
BsiHKCI CYCGRG 1 cut(s) 265
BsiSI CCGG 1 cut(s) 7
BslFI GGGAC 2 cut(s) 106, 390
BslI CCNNNNNNNGG 1 cut(s) 87
BsmFI GGGAC 2 cut(s) 106, 390
BsmI GAATGC 1 cut(s) 422
BsnI GGCC 1 cut(s) 473
BsoBI CYCGRG 1 cut(s) 265
Bsp143I GATC 3 cut(s) 14, 117, 537
Bsp19I CCATGG 1 cut(s) 246
BspACI CCGC 2 cut(s) 184, 274
BspANI GGCC 1 cut(s) 473
BspCNI CTCAG 1 cut(s) 41
BspLI GGNNCC 2 cut(s) 316, 378
BspPI GGATC 2 cut(s) 22, 125
BsrDI GCAATG 1 cut(s) 179
BssECI CCNNGG 3 cut(s) 80, 154, 246
BssMI GATC 3 cut(s) 14, 117, 537
BssT1I CCWWGG 1 cut(s) 246
Bst2UI CCWGG 4 cut(s) 82, 155, 300, 312
Bst4CI ACNGT 2 cut(s) 97, 170
BstAPI GCANNNNNTGC 1 cut(s) 242
BstC8I GCNNGC 2 cut(s) 22, 35
BstDEI CTNAG 1 cut(s) 49
BstDSI CCRYGG 1 cut(s) 246
BstKTI GATC 3 cut(s) 17, 120, 540
BstMBI GATC 3 cut(s) 14, 117, 537
BstMWI GCNNNNNNNGC 2 cut(s) 30, 242
BstNI CCWGG 4 cut(s) 82, 155, 300, 312
BstSCI CCNGG 4 cut(s) 80, 153, 298, 310
BstX2I RGATCY 1 cut(s) 117
BstYI RGATCY 1 cut(s) 117
BsuRI GGCC 1 cut(s) 473
BtgI CCRYGG 1 cut(s) 246
Cac8I GCNNGC 2 cut(s) 22, 35
Cfr13I GGNCC 3 cut(s) 377, 471, 522
Csp6I GTAC 2 cut(s) 143, 447
CviAII CATG 2 cut(s) 247, 381
CviJI RGCY 9 cut(s) 24, 33, 48, 87, 104, 159, 473, 507, 554
CviKI_1 RGCY 9 cut(s) 24, 33, 48, 87, 104, 159, 473, 507, 554
CviQI GTAC 2 cut(s) 143, 447
DdeI CTNAG 1 cut(s) 49
DpnI GATC 3 cut(s) 16, 119, 539
DpnII GATC 3 cut(s) 14, 117, 537
Eco130I CCWWGG 1 cut(s) 246
Eco47I GGWCC 2 cut(s) 377, 522
Eco57I CTGAAG 1 cut(s) 64
Eco88I CYCGRG 1 cut(s) 265
EcoO109I RGGNCCY 1 cut(s) 522
EcoRII CCWGG 4 cut(s) 80, 153, 298, 310
EcoT14I CCWWGG 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 2 cut(s) 250, 384
FaqI GGGAC 2 cut(s) 106, 390
FatI CATG 2 cut(s) 246, 380
FauI CCCGC 1 cut(s) 267
FspBI CTAG 3 cut(s) 332, 502, 545
GsaI CCCAGC 1 cut(s) 91
GsuI CTGGAG 2 cut(s) 103, 509
HaeIII GGCC 1 cut(s) 473
HapII CCGG 1 cut(s) 7
Hin1II CATG 2 cut(s) 250, 384
HindIII AAGCTT 1 cut(s) 22
HinfI GANTC 2 cut(s) 3, 465
HpaII CCGG 1 cut(s) 7
HphI GGTGA 1 cut(s) 198
Hpy188I TCNGA 3 cut(s) 29, 428, 464
Hpy188III TCNNGA 4 cut(s) 222, 391, 488, 535
HpyAV CCTTC 1 cut(s) 513
HpyCH4III ACNGT 2 cut(s) 97, 170
HpyCH4IV ACGT 2 cut(s) 208, 361
HpyCH4V TGCA 1 cut(s) 323
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 242
HpyF3I CTNAG 1 cut(s) 49
HpySE526I ACGT 2 cut(s) 208, 361
Hsp92II CATG 2 cut(s) 250, 384
Kzo9I GATC 3 cut(s) 14, 117, 537
LmnI GCTCC 3 cut(s) 84, 250, 490
MaeI CTAG 3 cut(s) 332, 502, 545
MaeII ACGT 2 cut(s) 208, 361
MaeIII GTNAC 2 cut(s) 52, 398
MalI GATC 3 cut(s) 16, 119, 539
MboI GATC 3 cut(s) 14, 117, 537
MfeI CAATTG 1 cut(s) 292
MflI RGATCY 1 cut(s) 117
MluCI AATT 4 cut(s) 189, 258, 292, 514
MmeI TCCRAC 2 cut(s) 95, 378
MnlI CCTC 2 cut(s) 161, 337
MseI TTAA 2 cut(s) 365, 527
MslI CAYNNNNRTG 2 cut(s) 184, 334
MspI CCGG 1 cut(s) 7
MspR9I CCNGG 4 cut(s) 82, 155, 300, 312
MunI CAATTG 1 cut(s) 292
Mva1269I GAATGC 1 cut(s) 422
MvaI CCWGG 4 cut(s) 82, 155, 300, 312
MwoI GCNNNNNNNGC 2 cut(s) 30, 242
NcoI CCATGG 1 cut(s) 246
NdeII GATC 3 cut(s) 14, 117, 537
NlaIII CATG 2 cut(s) 250, 384
NlaIV GGNNCC 2 cut(s) 316, 378
NmuCI GTSAC 1 cut(s) 398
OliI CACNNNNGTG 1 cut(s) 334
PaeR7I CTCGAG 1 cut(s) 265
PctI GAATGC 1 cut(s) 422
PfeI GAWTC 2 cut(s) 3, 465
PpuMI RGGWCCY 1 cut(s) 522
Psp1406I AACGTT 1 cut(s) 361
Psp5II RGGWCCY 1 cut(s) 522
Psp6I CCWGG 4 cut(s) 80, 153, 298, 310
PspFI CCCAGC 1 cut(s) 87
PspGI CCWGG 4 cut(s) 80, 153, 298, 310
PspN4I GGNNCC 2 cut(s) 316, 378
PspPI GGNCC 3 cut(s) 377, 471, 522
PspPPI RGGWCCY 1 cut(s) 522
PspXI VCTCGAGB 1 cut(s) 265
PsuI RGATCY 1 cut(s) 117
RsaI GTAC 2 cut(s) 144, 448
RsaNI GTAC 2 cut(s) 143, 447
RseI CAYNNNNRTG 2 cut(s) 184, 334
SaqAI TTAA 2 cut(s) 365, 527
Sau3AI GATC 3 cut(s) 14, 117, 537
Sau96I GGNCC 3 cut(s) 377, 471, 522
ScrFI CCNGG 4 cut(s) 82, 155, 300, 312
Sfr274I CTCGAG 1 cut(s) 265
SinI GGWCC 2 cut(s) 377, 522
SlaI CTCGAG 1 cut(s) 265
SmiMI CAYNNNNRTG 2 cut(s) 184, 334
SmlI CTYRAG 1 cut(s) 265
SmoI CTYRAG 1 cut(s) 265
Sse9I AATT 4 cut(s) 189, 258, 292, 514
SsiI CCGC 2 cut(s) 184, 274
SspMI CTAG 3 cut(s) 332, 502, 545
StyD4I CCNGG 4 cut(s) 80, 153, 298, 310
StyI CCWWGG 1 cut(s) 246
TaaI ACNGT 2 cut(s) 97, 170
TaiI ACGT 2 cut(s) 211, 364
TaqI TCGA 1 cut(s) 266
TasI AATT 4 cut(s) 189, 258, 292, 514
TatI WGTACW 1 cut(s) 446
TfiI GAWTC 2 cut(s) 3, 465
Tru1I TTAA 2 cut(s) 365, 527
Tru9I TTAA 2 cut(s) 365, 527
TseFI GTSAC 1 cut(s) 398
Tsp45I GTSAC 1 cut(s) 398
VpaK11BI GGWCC 2 cut(s) 377, 522
XapI RAATTY 2 cut(s) 189, 258
XhoI CTCGAG 1 cut(s) 265
XspI CTAG 3 cut(s) 332, 502, 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.