Rh5BG509000
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0002466
Physical Location & Seq
Forward (+)
80965358 .. 80966164
807 bp
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UTR
Exon/CDS
Intron
Rh5BG509000.1

Sequence Viewer

Length: 807 bp
ATGATGGGTTTGTTCTGTTTTTTGGTTCTGCTTCTCTTTCACTCTCTAAATTTTACTTCAGCTGCTTCTAATCAGGATGTGGTGAAGAAGCTTTTGTTGCAGTTCAAGCAATCCTCTGTTCAATCTGACCCTCATGGTTTCTTATCTGACTGGAAATCTGATTCTTCAACTGCCCTTTGTTCATGGAAAGGCCTGACTTGCTCTGAAGGCCACGTCATCACCCTCGACCTCTCCTATTCTGGTCTCATTGGAAGTCTTCACCTTCCAACTCTCACAGCCTTGCCAAGTCTTCAGAATCTGTACTTGCAAGGAAATTCATTCTCTGCTTCTGATCTTTCAGTTTCCAACATTACCACATGTAGTCTTGTAACAGTTGACTTGTCCTCCAACAACATCACAAGCCCTCTTCCGGTTCGGTCTTTTCTTGAGGTTTGTGAGAATCTGGCTTTGGTCAACCTCTCTGGCAATTCAATCCCAGGAGGGAGTTTCAGCTTTGGTGCTTCCTTGCTTCAGATTGACATCTCTAGAAACCTGATTTCGGATTCATCCTTGTTGACTTGCCAGAATCTGAATCTGCTCAATGTTTCCGGTAACAAGCTGACCGGAAAACTGAGTGATTCTATCTTGTCTTGCAAGAATCTGACAACACTTGACCTTTCATACAATGCTTTATCTGGGGAGATACCCAACACTTCCTGGAAAGTGGCTCTGCATCTCTCAAGTATTTGGATCTCTCAAGCAACAATTTCACTGGAAAGTTTGCAAGCCTTGATTTCACTGGAAAGTTTGCAAGCCTCACGTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase

Protein Analysis

268

Amino Acids

28.74

Weight (kDa)

5.41

Isoelectric Point (pI)

38.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 31 - 68 1.1e-09 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 737
AcsI RAATTY 2 cut(s) 49, 313
AcuI CTGAAG 4 cut(s) 42, 225, 275, 494
AfaI GTAC 1 cut(s) 302
AfiI CCNNNNNNNGG 2 cut(s) 409, 538
AflIII ACRYGT 1 cut(s) 356
AgsI TTSAA 4 cut(s) 106, 122, 168, 471
AjiI CACGTC 1 cut(s) 214
AjnI CCWGG 2 cut(s) 475, 695
AjuI GAANNNNNNNTTGG 2 cut(s) 431, 463
AluBI AGCT 4 cut(s) 62, 91, 492, 598
AluI AGCT 4 cut(s) 62, 91, 492, 598
Alw26I GTCTC 1 cut(s) 248
AlwI GGATC 1 cut(s) 737
AlwNI CAGNNNCTG 2 cut(s) 298, 568
AoxI GGCC 2 cut(s) 190, 208
ApeKI GCWGC 1 cut(s) 62
ApoI RAATTY 2 cut(s) 49, 313
AsuHPI GGTGA 3 cut(s) 94, 211, 251
BbsI GAAGAC 2 cut(s) 248, 281
BbvI GCAGC 1 cut(s) 49
BciT130I CCWGG 2 cut(s) 477, 697
BcoDI GTCTC 1 cut(s) 248
BfaI CTAG 1 cut(s) 525
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
Bme1390I CCNGG 2 cut(s) 477, 697
BmgBI CACGTC 1 cut(s) 214
BmrFI CCNGG 2 cut(s) 477, 697
BmsI GCATC 1 cut(s) 721
BpiI GAAGAC 2 cut(s) 248, 281
BpuEI CTTGAG 3 cut(s) 446, 703, 720
BsaBI GATNNNNATC 1 cut(s) 518
BsaI GGTCTC 1 cut(s) 248
BsaJI CCNNGG 1 cut(s) 475
BsaWI WCCGGW 3 cut(s) 409, 587, 602
BsaXI ACNNNNNCTCC 2 cut(s) 368, 398
Bsc4I CCNNNNNNNGG 2 cut(s) 409, 538
Bse1I ACTGG 3 cut(s) 155, 756, 783
Bse8I GATNNNNATC 1 cut(s) 518
BseBI CCWGG 2 cut(s) 477, 697
BseDI CCNNGG 1 cut(s) 475
BseGI GGATG 2 cut(s) 82, 545
BseJI GATNNNNATC 1 cut(s) 518
BseLI CCNNNNNNNGG 2 cut(s) 409, 538
BseMII CTCAG 1 cut(s) 602
BseNI ACTGG 3 cut(s) 155, 756, 783
BseXI GCAGC 1 cut(s) 49
BshFI GGCC 2 cut(s) 192, 210
BsiSI CCGG 3 cut(s) 410, 588, 603
BslI CCNNNNNNNGG 2 cut(s) 409, 538
BsmAI GTCTC 1 cut(s) 248
BsnI GGCC 2 cut(s) 192, 210
Bso31I GGTCTC 1 cut(s) 248
Bsp143I GATC 2 cut(s) 331, 729
BspANI GGCC 2 cut(s) 192, 210
BspCNI CTCAG 1 cut(s) 603
BspPI GGATC 1 cut(s) 737
BspTNI GGTCTC 1 cut(s) 248
BsrI ACTGG 3 cut(s) 155, 756, 783
BssECI CCNNGG 1 cut(s) 475
BssMI GATC 2 cut(s) 331, 729
Bst2UI CCWGG 2 cut(s) 477, 697
Bst4CI ACNGT 1 cut(s) 373
Bst6I CTCTTC 1 cut(s) 411
BstC8I GCNNGC 2 cut(s) 765, 792
BstDEI CTNAG 1 cut(s) 611
BstF5I GGATG 2 cut(s) 82, 545
BstKTI GATC 2 cut(s) 334, 732
BstMAI GTCTC 1 cut(s) 248
BstMBI GATC 2 cut(s) 331, 729
BstMWI GCNNNNNNNGC 4 cut(s) 97, 106, 198, 207
BstNI CCWGG 2 cut(s) 477, 697
BstNSI RCATGY 1 cut(s) 360
BstSCI CCNGG 2 cut(s) 475, 695
BstV1I GCAGC 1 cut(s) 49
BstV2I GAAGAC 2 cut(s) 248, 281
BstX2I RGATCY 1 cut(s) 729
BstYI RGATCY 1 cut(s) 729
BsuRI GGCC 2 cut(s) 192, 210
BtrI CACGTC 1 cut(s) 214
BtsCI GGATG 2 cut(s) 82, 545
BtsIMutI CAGTG 2 cut(s) 749, 776
Cac8I GCNNGC 2 cut(s) 765, 792
CaiI CAGNNNCTG 2 cut(s) 298, 568
Csp6I GTAC 1 cut(s) 301
CviAII CATG 3 cut(s) 134, 183, 357
CviQI GTAC 1 cut(s) 301
DdeI CTNAG 1 cut(s) 611
DpnI GATC 2 cut(s) 333, 731
DpnII GATC 2 cut(s) 331, 729
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
Eco147I AGGCCT 1 cut(s) 192
Eco31I GGTCTC 1 cut(s) 248
Eco57I CTGAAG 4 cut(s) 42, 225, 275, 494
EcoRII CCWGG 2 cut(s) 475, 695
FaeI CATG 3 cut(s) 137, 186, 360
FaiI YATR 4 cut(s) 135, 184, 358, 661
FatI CATG 3 cut(s) 133, 182, 356
Fnu4HI GCNGC 1 cut(s) 63
FokI GGATG 2 cut(s) 89, 532
Fsp4HI GCNGC 1 cut(s) 63
FspBI CTAG 1 cut(s) 525
GluI GCNGC 1 cut(s) 63
HaeIII GGCC 2 cut(s) 192, 210
HapII CCGG 3 cut(s) 410, 588, 603
Hin1II CATG 3 cut(s) 137, 186, 360
HincII GTYRAC 3 cut(s) 376, 454, 555
HindII GTYRAC 3 cut(s) 376, 454, 555
HindIII AAGCTT 1 cut(s) 89
HinfI GANTC 8 cut(s) 161, 295, 439, 542, 565, 571, 617, 637
HpaII CCGG 3 cut(s) 410, 588, 603
HphI GGTGA 3 cut(s) 94, 211, 251
Hpy166II GTNNAC 3 cut(s) 376, 454, 555
Hpy188III TCNNGA 3 cut(s) 74, 425, 525
Hpy8I GTNNAC 3 cut(s) 376, 454, 555
HpyAV CCTTC 2 cut(s) 200, 272
HpyCH4III ACNGT 1 cut(s) 373
HpyCH4IV ACGT 2 cut(s) 213, 799
HpyCH4V TGCA 6 cut(s) 100, 307, 633, 712, 763, 790
HpyF10VI GCNNNNNNNGC 4 cut(s) 97, 106, 198, 207
HpyF3I CTNAG 1 cut(s) 611
HpySE526I ACGT 2 cut(s) 213, 799
Hsp92II CATG 3 cut(s) 137, 186, 360
Kzo9I GATC 2 cut(s) 331, 729
Lsp1109I GCAGC 1 cut(s) 49
LweI GCATC 1 cut(s) 721
MaeI CTAG 1 cut(s) 525
MaeII ACGT 2 cut(s) 213, 799
MaeIII GTNAC 2 cut(s) 367, 590
MalI GATC 2 cut(s) 333, 731
MboI GATC 2 cut(s) 331, 729
MboII GAAGA 5 cut(s) 97, 156, 248, 281, 398
MflI RGATCY 1 cut(s) 729
MluCI AATT 4 cut(s) 49, 313, 466, 744
MmeI TCCRAC 3 cut(s) 290, 369, 411
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 3 cut(s) 410, 588, 603
MspR9I CCNGG 2 cut(s) 477, 697
MvaI CCWGG 2 cut(s) 477, 697
MwoI GCNNNNNNNGC 4 cut(s) 97, 106, 198, 207
NdeII GATC 2 cut(s) 331, 729
NlaIII CATG 3 cut(s) 137, 186, 360
NspI RCATGY 1 cut(s) 360
PceI AGGCCT 1 cut(s) 192
PciI ACATGT 1 cut(s) 356
PfeI GAWTC 8 cut(s) 161, 295, 439, 542, 565, 571, 617, 637
PfoI TCCNGGA 1 cut(s) 695
PkrI GCNGC 1 cut(s) 64
PscI ACATGT 1 cut(s) 356
Psp6I CCWGG 2 cut(s) 475, 695
PspGI CCWGG 2 cut(s) 475, 695
PstNI CAGNNNCTG 2 cut(s) 298, 568
PsuI RGATCY 1 cut(s) 729
PvuII CAGCTG 1 cut(s) 62
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 2 cut(s) 331, 729
ScrFI CCNGG 2 cut(s) 477, 697
SfaNI GCATC 1 cut(s) 721
SmlI CTYRAG 3 cut(s) 425, 718, 735
SmoI CTYRAG 3 cut(s) 425, 718, 735
Sse9I AATT 4 cut(s) 49, 313, 466, 744
SseBI AGGCCT 1 cut(s) 192
SspMI CTAG 1 cut(s) 525
StuI AGGCCT 1 cut(s) 192
StyD4I CCNGG 2 cut(s) 475, 695
TaaI ACNGT 1 cut(s) 373
TaiI ACGT 2 cut(s) 216, 802
TaqI TCGA 1 cut(s) 225
TaqII GACCGA 1 cut(s) 405
TasI AATT 4 cut(s) 49, 313, 466, 744
TatI WGTACW 1 cut(s) 300
TfiI GAWTC 8 cut(s) 161, 295, 439, 542, 565, 571, 617, 637
TscAI CASTG 2 cut(s) 756, 783
TseI GCWGC 1 cut(s) 62
TspDTI ATGAA 4 cut(s) 171, 306, 534, 648
TspRI CASTG 2 cut(s) 756, 783
XapI RAATTY 2 cut(s) 49, 313
XbaI TCTAGA 1 cut(s) 524
XceI RCATGY 1 cut(s) 360
XspI CTAG 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.