FvH4_3g41392
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0002466
Physical Location & Seq
Forward (+)
34770717 .. 34771139
423 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g41392.t1

Sequence Viewer

Length: 423 bp
ATGTTAGGTGGAAATATTCCAGAGAGCTTTGGAGGATTGAAAGCAGTTGGAGTCCTGGATCTCTCTCACAATAATCTTCAAGGTTATGTCCCAGGATCTTTGGGGACTCTCTCTTTCCTGAGTGACCTTGATGTGTCTAACAACAACCTCACCGGTCTCATCCCTTCTGGAGGTCAGCTTACCACTTTCCCAGCATCCAGATATGAGAACAACTCTGGCCTTTGTGGGTTACCCCTGCCACCGTGTGGCTCTCAAAGACATTCAGCAGAGAGAGTTAAGGGAAAGAAGCCGTCTATGGATTCAGGAATGGTCATTTCTTTTGCCTCTTTCACTTTCTTCTTTATTGTAACTGTGTATCTCTCTTTCTTTTCACCCTACCTTGACCTCCCATTTAGGATTCTCCTCAAGGTTTTTTCCTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase

Protein Analysis

141

Amino Acids

15.0

Weight (kDa)

7.72

Isoelectric Point (pI)

39.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 7 - 50 7.4e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 245
AclWI GGATC 2 cut(s) 66, 103
AdeI CACNNNGTG 1 cut(s) 245
AfiI CCNNNNNNNGG 2 cut(s) 170, 245
AgeI ACCGGT 1 cut(s) 152
AgsI TTSAA 2 cut(s) 40, 80
AjnI CCWGG 2 cut(s) 54, 91
AluBI AGCT 2 cut(s) 27, 178
AluI AGCT 2 cut(s) 27, 178
Alw26I GTCTC 1 cut(s) 161
AlwI GGATC 2 cut(s) 66, 103
AoxI GGCC 1 cut(s) 217
AsiGI ACCGGT 1 cut(s) 152
AsuHPI GGTGA 2 cut(s) 142, 363
BceAI ACGGC 1 cut(s) 274
BciT130I CCWGG 2 cut(s) 56, 93
BcoDI GTCTC 1 cut(s) 161
BfaI CTAG 1 cut(s) 421
Bme1390I CCNGG 2 cut(s) 56, 93
BmrFI CCNGG 2 cut(s) 56, 93
BmsI GCATC 1 cut(s) 203
BplI GAGNNNNNCTC 2 cut(s) 197, 229
BpmI CTGGAG 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 389
BsaI GGTCTC 1 cut(s) 161
BsaJI CCNNGG 1 cut(s) 91
BsaWI WCCGGW 1 cut(s) 152
Bsc4I CCNNNNNNNGG 2 cut(s) 170, 245
Bse118I RCCGGY 1 cut(s) 152
BseBI CCWGG 2 cut(s) 56, 93
BseDI CCNNGG 1 cut(s) 91
BseGI GGATG 2 cut(s) 159, 194
BseLI CCNNNNNNNGG 2 cut(s) 170, 245
BseMII CTCAG 1 cut(s) 110
BseRI GAGGAG 1 cut(s) 392
BseYI CCCAGC 1 cut(s) 190
BshFI GGCC 1 cut(s) 219
BshTI ACCGGT 1 cut(s) 152
BsiSI CCGG 1 cut(s) 153
BslFI GGGAC 2 cut(s) 74, 118
BslI CCNNNNNNNGG 2 cut(s) 170, 245
BsmAI GTCTC 1 cut(s) 161
BsmFI GGGAC 2 cut(s) 74, 118
BsnI GGCC 1 cut(s) 219
Bso31I GGTCTC 1 cut(s) 161
Bsp143I GATC 2 cut(s) 58, 95
BspANI GGCC 1 cut(s) 219
BspCNI CTCAG 1 cut(s) 111
BspPI GGATC 2 cut(s) 66, 103
BspTNI GGTCTC 1 cut(s) 161
BsrFI RCCGGY 1 cut(s) 152
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 91
BssMI GATC 2 cut(s) 58, 95
Bst2UI CCWGG 2 cut(s) 56, 93
Bst4CI ACNGT 2 cut(s) 243, 352
BstDEI CTNAG 1 cut(s) 119
BstEII GGTNACC 1 cut(s) 228
BstENI CCTNNNNNAGG 1 cut(s) 168
BstF5I GGATG 2 cut(s) 159, 194
BstKTI GATC 2 cut(s) 61, 98
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 2 cut(s) 58, 95
BstNI CCWGG 2 cut(s) 56, 93
BstPI GGTNACC 1 cut(s) 228
BstSCI CCNGG 2 cut(s) 54, 91
BstX2I RGATCY 2 cut(s) 58, 95
BstYI RGATCY 2 cut(s) 58, 95
BsuRI GGCC 1 cut(s) 219
BtsCI GGATG 2 cut(s) 159, 194
Cfr10I RCCGGY 1 cut(s) 152
CspAI ACCGGT 1 cut(s) 152
CviJI RGCY 5 cut(s) 27, 178, 219, 249, 289
CviKI_1 RGCY 5 cut(s) 27, 178, 219, 249, 289
DdeI CTNAG 1 cut(s) 119
DpnI GATC 2 cut(s) 60, 97
DpnII GATC 2 cut(s) 58, 95
DraIII CACNNNGTG 1 cut(s) 245
Eco31I GGTCTC 1 cut(s) 161
Eco91I GGTNACC 1 cut(s) 228
EcoNI CCTNNNNNAGG 1 cut(s) 168
EcoO65I GGTNACC 1 cut(s) 228
EcoRII CCWGG 2 cut(s) 54, 91
FaiI YATR 3 cut(s) 87, 204, 296
FaqI GGGAC 2 cut(s) 74, 118
FokI GGATG 2 cut(s) 146, 181
FspBI CTAG 1 cut(s) 421
GsaI CCCAGC 1 cut(s) 194
GsuI CTGGAG 1 cut(s) 189
HaeIII GGCC 1 cut(s) 219
HapII CCGG 1 cut(s) 153
HinfI GANTC 4 cut(s) 51, 106, 299, 397
HpaII CCGG 1 cut(s) 153
HphI GGTGA 2 cut(s) 142, 363
Hpy188III TCNNGA 5 cut(s) 20, 118, 168, 198, 303
HpyAV CCTTC 1 cut(s) 174
HpyCH4III ACNGT 2 cut(s) 243, 352
HpyF3I CTNAG 1 cut(s) 119
Kzo9I GATC 2 cut(s) 58, 95
LweI GCATC 1 cut(s) 203
MaeI CTAG 1 cut(s) 421
MaeIII GTNAC 3 cut(s) 122, 228, 346
MalI GATC 2 cut(s) 60, 97
MboI GATC 2 cut(s) 58, 95
MboII GAAGA 2 cut(s) 68, 328
MflI RGATCY 2 cut(s) 58, 95
MlyI GAGTC 2 cut(s) 60, 100
MmeI TCCRAC 1 cut(s) 28
MnlI CCTC 6 cut(s) 26, 158, 164, 334, 395, 413
MseI TTAA 1 cut(s) 276
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 2 cut(s) 56, 93
MvaI CCWGG 2 cut(s) 56, 93
NdeII GATC 2 cut(s) 58, 95
NmuCI GTSAC 1 cut(s) 122
PfeI GAWTC 2 cut(s) 299, 397
PflMI CCANNNNNTGG 1 cut(s) 245
PfoI TCCNGGA 1 cut(s) 54
PinAI ACCGGT 1 cut(s) 152
PleI GAGTC 2 cut(s) 59, 100
PpsI GAGTC 2 cut(s) 59, 100
Psp6I CCWGG 2 cut(s) 54, 91
PspEI GGTNACC 1 cut(s) 228
PspFI CCCAGC 1 cut(s) 190
PspGI CCWGG 2 cut(s) 54, 91
PsuI RGATCY 2 cut(s) 58, 95
SaqAI TTAA 1 cut(s) 276
Sau3AI GATC 2 cut(s) 58, 95
SchI GAGTC 2 cut(s) 60, 100
ScrFI CCNGG 2 cut(s) 56, 93
SfaNI GCATC 1 cut(s) 203
SmlI CTYRAG 1 cut(s) 404
SmoI CTYRAG 1 cut(s) 404
SspI AATATT 1 cut(s) 16
SspMI CTAG 1 cut(s) 421
StyD4I CCNGG 2 cut(s) 54, 91
TaaI ACNGT 2 cut(s) 243, 352
TfiI GAWTC 2 cut(s) 299, 397
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TseFI GTSAC 1 cut(s) 122
Tsp45I GTSAC 1 cut(s) 122
Van91I CCANNNNNTGG 1 cut(s) 245
XagI CCTNNNNNAGG 1 cut(s) 168
XspI CTAG 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.