Rh5CG532900
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0002466
Physical Location & Seq
Forward (+)
74672202 .. 74673008
807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG532900.1

Sequence Viewer

Length: 807 bp
ATGATGGGTTTGTTCTGTTTTTTGGTTCTGCTTCTCTTTCACTCTCTAAATTTTACTTCAGCTGCTTCTAATCAGGATGTGGTGAAGAAGCTTTTGTTGCAGTTCAAGCAATCCTCTGTTCAATCTGACCCTCATGGTTTCTTATCTGACTGGAAATCTGATTCTTCAACTGCCCTTTGTTCATGGAAAGGCCTGACTTGCTCTGAAGGCCACGTCATCACCCTCGACCTCTCCTATTCTGGTCTCATTGGAAGTCTTCACCTTCCAACTCTCACAGCCTTGCCAAGTCTTCAGAATCTGTACTTGCAAGGAAATTCATTCTCTGCTTCTGATCTTTCAGTTTCCAACATTACCACATGTAGTCTTGTAACAGTTGACTTGTCCTCCAACAACATCACAAGCCCTCTTCCGGTTCGGTCTTTTCTTGAGGTTTGTGAGAATCTGGCTTTGGTCAACCTCTCTGGCAATTCAATCCCAGGAGGGAGTTTCAGCTTTGGTGCTTCCTTGCTTCAGATTGACATCTCTAGAAACCTGATTTCGGATTCATCCTTGTTGACTTGCCAGAATCTGAATCTGCTCAATGTTTCCGGTAACAAGCTGACCGGAAAACTGAGTGATTCTATCTTGTCTTGCAAGAATCTGACAACACTTGACCTTTCATACAATGCTTTATCTGGGGAGATACCCAACACTTCCTGGAAAGTGGCTCTGCATCTCTCAAGTATTTGGATCTCTCAAGCAACAATTTCACTGGAAAGTTTGCAAGCCTTGATTTCACTGGAAAGTTTGCAAGCCTCACGTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase

Protein Analysis

268

Amino Acids

28.74

Weight (kDa)

5.41

Isoelectric Point (pI)

38.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 31 - 68 1.1e-09 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 737
AcsI RAATTY 2 cut(s) 49, 313
AcuI CTGAAG 4 cut(s) 42, 225, 275, 494
AfaI GTAC 1 cut(s) 302
AfiI CCNNNNNNNGG 2 cut(s) 409, 538
AflIII ACRYGT 1 cut(s) 356
AgsI TTSAA 4 cut(s) 106, 122, 168, 471
AjiI CACGTC 1 cut(s) 214
AjnI CCWGG 2 cut(s) 475, 695
AjuI GAANNNNNNNTTGG 2 cut(s) 431, 463
AluBI AGCT 4 cut(s) 62, 91, 492, 598
AluI AGCT 4 cut(s) 62, 91, 492, 598
Alw26I GTCTC 1 cut(s) 248
AlwI GGATC 1 cut(s) 737
AlwNI CAGNNNCTG 2 cut(s) 298, 568
AoxI GGCC 2 cut(s) 190, 208
ApeKI GCWGC 1 cut(s) 62
ApoI RAATTY 2 cut(s) 49, 313
AsuHPI GGTGA 3 cut(s) 94, 211, 251
BbsI GAAGAC 2 cut(s) 248, 281
BbvI GCAGC 1 cut(s) 49
BciT130I CCWGG 2 cut(s) 477, 697
BcoDI GTCTC 1 cut(s) 248
BfaI CTAG 1 cut(s) 525
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
Bme1390I CCNGG 2 cut(s) 477, 697
BmgBI CACGTC 1 cut(s) 214
BmrFI CCNGG 2 cut(s) 477, 697
BmsI GCATC 1 cut(s) 721
BpiI GAAGAC 2 cut(s) 248, 281
BpuEI CTTGAG 3 cut(s) 446, 703, 720
BsaBI GATNNNNATC 1 cut(s) 518
BsaI GGTCTC 1 cut(s) 248
BsaJI CCNNGG 1 cut(s) 475
BsaWI WCCGGW 3 cut(s) 409, 587, 602
BsaXI ACNNNNNCTCC 2 cut(s) 368, 398
Bsc4I CCNNNNNNNGG 2 cut(s) 409, 538
Bse1I ACTGG 3 cut(s) 155, 756, 783
Bse8I GATNNNNATC 1 cut(s) 518
BseBI CCWGG 2 cut(s) 477, 697
BseDI CCNNGG 1 cut(s) 475
BseGI GGATG 2 cut(s) 82, 545
BseJI GATNNNNATC 1 cut(s) 518
BseLI CCNNNNNNNGG 2 cut(s) 409, 538
BseMII CTCAG 1 cut(s) 602
BseNI ACTGG 3 cut(s) 155, 756, 783
BseXI GCAGC 1 cut(s) 49
BshFI GGCC 2 cut(s) 192, 210
BsiSI CCGG 3 cut(s) 410, 588, 603
BslI CCNNNNNNNGG 2 cut(s) 409, 538
BsmAI GTCTC 1 cut(s) 248
BsnI GGCC 2 cut(s) 192, 210
Bso31I GGTCTC 1 cut(s) 248
Bsp143I GATC 2 cut(s) 331, 729
BspANI GGCC 2 cut(s) 192, 210
BspCNI CTCAG 1 cut(s) 603
BspPI GGATC 1 cut(s) 737
BspTNI GGTCTC 1 cut(s) 248
BsrI ACTGG 3 cut(s) 155, 756, 783
BssECI CCNNGG 1 cut(s) 475
BssMI GATC 2 cut(s) 331, 729
Bst2UI CCWGG 2 cut(s) 477, 697
Bst4CI ACNGT 1 cut(s) 373
Bst6I CTCTTC 1 cut(s) 411
BstC8I GCNNGC 2 cut(s) 765, 792
BstDEI CTNAG 1 cut(s) 611
BstF5I GGATG 2 cut(s) 82, 545
BstKTI GATC 2 cut(s) 334, 732
BstMAI GTCTC 1 cut(s) 248
BstMBI GATC 2 cut(s) 331, 729
BstMWI GCNNNNNNNGC 4 cut(s) 97, 106, 198, 207
BstNI CCWGG 2 cut(s) 477, 697
BstNSI RCATGY 1 cut(s) 360
BstSCI CCNGG 2 cut(s) 475, 695
BstV1I GCAGC 1 cut(s) 49
BstV2I GAAGAC 2 cut(s) 248, 281
BstX2I RGATCY 1 cut(s) 729
BstYI RGATCY 1 cut(s) 729
BsuRI GGCC 2 cut(s) 192, 210
BtrI CACGTC 1 cut(s) 214
BtsCI GGATG 2 cut(s) 82, 545
BtsIMutI CAGTG 2 cut(s) 749, 776
Cac8I GCNNGC 2 cut(s) 765, 792
CaiI CAGNNNCTG 2 cut(s) 298, 568
Csp6I GTAC 1 cut(s) 301
CviAII CATG 3 cut(s) 134, 183, 357
CviQI GTAC 1 cut(s) 301
DdeI CTNAG 1 cut(s) 611
DpnI GATC 2 cut(s) 333, 731
DpnII GATC 2 cut(s) 331, 729
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
Eco147I AGGCCT 1 cut(s) 192
Eco31I GGTCTC 1 cut(s) 248
Eco57I CTGAAG 4 cut(s) 42, 225, 275, 494
EcoRII CCWGG 2 cut(s) 475, 695
FaeI CATG 3 cut(s) 137, 186, 360
FaiI YATR 4 cut(s) 135, 184, 358, 661
FatI CATG 3 cut(s) 133, 182, 356
Fnu4HI GCNGC 1 cut(s) 63
FokI GGATG 2 cut(s) 89, 532
Fsp4HI GCNGC 1 cut(s) 63
FspBI CTAG 1 cut(s) 525
GluI GCNGC 1 cut(s) 63
HaeIII GGCC 2 cut(s) 192, 210
HapII CCGG 3 cut(s) 410, 588, 603
Hin1II CATG 3 cut(s) 137, 186, 360
HincII GTYRAC 3 cut(s) 376, 454, 555
HindII GTYRAC 3 cut(s) 376, 454, 555
HindIII AAGCTT 1 cut(s) 89
HinfI GANTC 8 cut(s) 161, 295, 439, 542, 565, 571, 617, 637
HpaII CCGG 3 cut(s) 410, 588, 603
HphI GGTGA 3 cut(s) 94, 211, 251
Hpy166II GTNNAC 3 cut(s) 376, 454, 555
Hpy188III TCNNGA 3 cut(s) 74, 425, 525
Hpy8I GTNNAC 3 cut(s) 376, 454, 555
HpyAV CCTTC 2 cut(s) 200, 272
HpyCH4III ACNGT 1 cut(s) 373
HpyCH4IV ACGT 2 cut(s) 213, 799
HpyCH4V TGCA 6 cut(s) 100, 307, 633, 712, 763, 790
HpyF10VI GCNNNNNNNGC 4 cut(s) 97, 106, 198, 207
HpyF3I CTNAG 1 cut(s) 611
HpySE526I ACGT 2 cut(s) 213, 799
Hsp92II CATG 3 cut(s) 137, 186, 360
Kzo9I GATC 2 cut(s) 331, 729
Lsp1109I GCAGC 1 cut(s) 49
LweI GCATC 1 cut(s) 721
MaeI CTAG 1 cut(s) 525
MaeII ACGT 2 cut(s) 213, 799
MaeIII GTNAC 2 cut(s) 367, 590
MalI GATC 2 cut(s) 333, 731
MboI GATC 2 cut(s) 331, 729
MboII GAAGA 5 cut(s) 97, 156, 248, 281, 398
MflI RGATCY 1 cut(s) 729
MluCI AATT 4 cut(s) 49, 313, 466, 744
MmeI TCCRAC 3 cut(s) 290, 369, 411
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 3 cut(s) 410, 588, 603
MspR9I CCNGG 2 cut(s) 477, 697
MvaI CCWGG 2 cut(s) 477, 697
MwoI GCNNNNNNNGC 4 cut(s) 97, 106, 198, 207
NdeII GATC 2 cut(s) 331, 729
NlaIII CATG 3 cut(s) 137, 186, 360
NspI RCATGY 1 cut(s) 360
PceI AGGCCT 1 cut(s) 192
PciI ACATGT 1 cut(s) 356
PfeI GAWTC 8 cut(s) 161, 295, 439, 542, 565, 571, 617, 637
PfoI TCCNGGA 1 cut(s) 695
PkrI GCNGC 1 cut(s) 64
PscI ACATGT 1 cut(s) 356
Psp6I CCWGG 2 cut(s) 475, 695
PspGI CCWGG 2 cut(s) 475, 695
PstNI CAGNNNCTG 2 cut(s) 298, 568
PsuI RGATCY 1 cut(s) 729
PvuII CAGCTG 1 cut(s) 62
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 2 cut(s) 331, 729
ScrFI CCNGG 2 cut(s) 477, 697
SfaNI GCATC 1 cut(s) 721
SmlI CTYRAG 3 cut(s) 425, 718, 735
SmoI CTYRAG 3 cut(s) 425, 718, 735
Sse9I AATT 4 cut(s) 49, 313, 466, 744
SseBI AGGCCT 1 cut(s) 192
SspMI CTAG 1 cut(s) 525
StuI AGGCCT 1 cut(s) 192
StyD4I CCNGG 2 cut(s) 475, 695
TaaI ACNGT 1 cut(s) 373
TaiI ACGT 2 cut(s) 216, 802
TaqI TCGA 1 cut(s) 225
TaqII GACCGA 1 cut(s) 405
TasI AATT 4 cut(s) 49, 313, 466, 744
TatI WGTACW 1 cut(s) 300
TfiI GAWTC 8 cut(s) 161, 295, 439, 542, 565, 571, 617, 637
TscAI CASTG 2 cut(s) 756, 783
TseI GCWGC 1 cut(s) 62
TspDTI ATGAA 4 cut(s) 171, 306, 534, 648
TspRI CASTG 2 cut(s) 756, 783
XapI RAATTY 2 cut(s) 49, 313
XbaI TCTAGA 1 cut(s) 524
XceI RCATGY 1 cut(s) 360
XspI CTAG 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.