Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002466

Physical Location & Seq

Genomic Coordinates Forward (+)

80966836 .. 80967915

Gene Structure 1080 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG509100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGTGGGCAAACAATCTCACTGGTGAAATCCCAGAAGGCATTTGCATCAATGGAGGAAACCTGGAAACCCTGATTCTCAACAATAATCTCATTACTGGGGCCATTCCACAGTCCATTGGCAGATGCACCAATATGATTTGGGTGTCACTATCTAGCAACAGGCTTACAGGAGCAATCCCTTCAGGTATTGGAAATCTCCTTAAGCTTGCTATACTTCAGTTGGGTAATAATTCACTGTCTGGTCAGATTCCAGCTGAGCTTGGCAAGTGTCAAAGCCTCATTTGGCTTGACCTGAACAGCAATGACCTAAATGGTTCTATCCCATCAGAGCTTGCTAACCAGGCCAACCTAGTCATTCCTGGAACAGTTTCTGGGAAGCAGTTTGCATTTGTTAGAAATGAGGGCGGTACAGCTTGCAGGGGTGCAGGAGGACTAGTTGAGTTTGAGGGAGTCCGACATCTGAGACTAGAAAGTTTACCTATGGTTCATTCTTGTCCGTCATCTAGAATTTACACAGGAATGACAGTTTACACATTCACCAGCAATGGAAGCATGCTCTTCCTTGACATTTCCTACAATCACTTGTCTGGGACTATTCCCGCAAACTTAGGTGCACTGTCCTATTTGCAAGTCTTCAATCTAGGACACAATATGTTAAGTGGAAATATTCCAGAAAGCTTTAGAGGACTAAAAGCAATTGGAGTCCTGGATCTCTCTCACAATAATCTTCAAGGTTATATCCCAGGATCTTTGGGGACTCTCTCTTTCCTGAGTGACCTCGATGTGTCTAACAACAATCTCACCGGTACAATCCCTTCCGGAGGTCAGCTCACCACCTTCCCAGCATCAAGATATGAGAATAACTCCGGCCTTTGTGGCATTCCCTTGCCAGCCTGTGGATATCAAAGACCTCCAGCAGACTCTGAAGTTGTTCCTGAAGAAGAGAAGACTATAGTTTCAGGAATGGTCATTGGTTCTGGTTCTTTCACTTTTTTCTTTTTGGTGACTGTGTATCTCTCTTTGATGTCACCCTATCTCGACCTCCCATTCCGGATTCTCCTCAAGGGTTTTTTCTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase

Protein Analysis

359

Amino Acids

38.24

Weight (kDa)

5.37

Isoelectric Point (pI)

35.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	47 - 103	3.4e-06	Leucine rich repeat
Island	PF20141	117 - 180	6.3e-30	Brassinosteroid receptor island domain
LRR_8	PF13855	188 - 243	1.8e-08	Leucine rich repeat
LRR_8	PF13855	208 - 267	4.7e-08	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55610 AT1G55610 AT3G13380
fragaria_vesca	FvH4_3g41391 FvH4_3g41392 FvH4_3g41420
malus_domestica	MD03G1044500.v1.1 MD11G1047400.v1.1
prunus_persica	Prupe.6G036400_v2.0.a1
pyrus_communis	pycom03g03440 pycom11g03840
rosa_chinensis	RchiOBHm_Chr5g0074361 RchiOBHm_Chr5g0074371 RchiOBHm_Chr5g0074401
rosa_laevigata	RLG00000036471 RLG00000036472
rosa_multiflora	Rmu_sc0000573.1_g000010 Rmu_sc0000573.1_g000018 Rmu_sc0004706.1_g000021 Rmu_sc0027008.1_g000001 Rmu_sc0027009.1_g000001
rosa_roxburghii	Rroxscaffold_1G00007140 Rroxscaffold_1G00007150
rosa_rugosa	Rorug05G0430600 Rorug05G0430700 Rorug05G0430800 Rorug05G0430800
rosa_samantha	Rh5AG488300 Rh5AG488500 Rh5BG509000 Rh5BG509100 Rh5BG509300 Rh5CG532900 Rh5CG533000 Rh5CG533100 Rh5DG521600 Rh5DG521700 Rh5DG521800 Rh5DG522000
rosa_wichuraiana	Rw5G045290 Rw5G045300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	896
AccIII	TCCGGA	2 cut(s)	818, 1050
AciI	CCGC	2 cut(s)	405, 600
AclWI	GGATC	2 cut(s)	717, 754
AcsI	RAATTY	1 cut(s)	507
AcuI	CTGAAG	4 cut(s)	165, 200, 945, 957
AfaI	GTAC	2 cut(s)	409, 808
AfiI	CCNNNNNNNGG	2 cut(s)	821, 896
AflII	CTTAAG	1 cut(s)	200
AgeI	ACCGGT	1 cut(s)	803
AgsI	TTSAA	2 cut(s)	637, 731
AhlI	ACTAGT	1 cut(s)	433
AjnI	CCWGG	5 cut(s)	60, 339, 358, 705, 742
AluBI	AGCT	7 cut(s)	205, 254, 259, 331, 413, 678, 829
AluI	AGCT	7 cut(s)	205, 254, 259, 331, 413, 678, 829
Alw21I	GWGCWC	1 cut(s)	616
Alw26I	GTCTC	1 cut(s)	457
Alw44I	GTGCAC	1 cut(s)	612
AlwI	GGATC	2 cut(s)	717, 754
AlwNI	CAGNNNCTG	2 cut(s)	371, 923
Aor13HI	TCCGGA	2 cut(s)	818, 1050
AoxI	GGCC	3 cut(s)	99, 342, 868
ApaLI	GTGCAC	1 cut(s)	612
ApoI	RAATTY	1 cut(s)	507
AsiGI	ACCGGT	1 cut(s)	803
Asp700I	GAANNNNTTC	2 cut(s)	367, 930
AspS9I	GGNCC	1 cut(s)	99
AsuHPI	GGTGA	6 cut(s)	35, 529, 793, 823, 1015, 1020
BaeGI	GKGCMC	1 cut(s)	616
BarI	GAAGNNNNNNTAC	2 cut(s)	799, 831
BbsI	GAAGAC	2 cut(s)	625, 953
Bbv12I	GWGCWC	1 cut(s)	616
BccI	CCATC	1 cut(s)	331
BciT130I	CCWGG	5 cut(s)	62, 341, 360, 707, 744
BcoDI	GTCTC	1 cut(s)	457
BcuI	ACTAGT	1 cut(s)	433
BfaI	CTAG	7 cut(s)	153, 350, 434, 467, 504, 641, 1078
BfmI	CTRYAG	1 cut(s)	951
BfrI	CTTAAG	1 cut(s)	200
BglI	GCCNNNNNGGC	1 cut(s)	876
BlpI	GCTNAGC	1 cut(s)	255
Bme1390I	CCNGG	5 cut(s)	62, 341, 360, 707, 744
BmgT120I	GGNCC	1 cut(s)	99
BmiI	GGNNCC	1 cut(s)	100
BmrFI	CCNGG	5 cut(s)	62, 341, 360, 707, 744
BmrI	ACTGGG	1 cut(s)	105
BmsI	GCATC	3 cut(s)	54, 113, 854
BmuI	ACTGGG	1 cut(s)	105
BpiI	GAAGAC	2 cut(s)	625, 953
BplI	GAGNNNNNCTC	4 cut(s)	813, 845, 848, 880
BpmI	CTGGAG	1 cut(s)	897
Bpu1102I	GCTNAGC	1 cut(s)	255
BpuEI	CTTGAG	1 cut(s)	1046
BsaJI	CCNNGG	1 cut(s)	742
BsaWI	WCCGGW	3 cut(s)	803, 818, 1050
BsaXI	ACNNNNNCTCC	2 cut(s)	420, 450
Bsc4I	CCNNNNNNNGG	2 cut(s)	821, 896
Bse118I	RCCGGY	1 cut(s)	803
Bse1I	ACTGG	2 cut(s)	25, 100
Bse3DI	GCAATG	2 cut(s)	307, 550
BseAI	TCCGGA	2 cut(s)	818, 1050
BseBI	CCWGG	5 cut(s)	62, 341, 360, 707, 744
BseDI	CCNNGG	1 cut(s)	742
BseLI	CCNNNNNNNGG	2 cut(s)	821, 896
BseMI	GCAATG	2 cut(s)	307, 550
BseMII	CTCAG	3 cut(s)	246, 452, 761
BseNI	ACTGG	2 cut(s)	25, 100
BseRI	GAGGAG	1 cut(s)	1049
BseSI	GKGCMC	1 cut(s)	616
BseYI	CCCAGC	1 cut(s)	841
BsgI	GTGCAG	1 cut(s)	444
BshFI	GGCC	3 cut(s)	101, 344, 870
BshTI	ACCGGT	1 cut(s)	803
BsiHKAI	GWGCWC	1 cut(s)	616
BsiSI	CCGG	4 cut(s)	804, 819, 867, 1051
BslFI	GGGAC	2 cut(s)	604, 769
BslI	CCNNNNNNNGG	2 cut(s)	821, 896
BsmAI	GTCTC	1 cut(s)	457
BsmFI	GGGAC	2 cut(s)	604, 769
BsmI	GAATGC	1 cut(s)	879
BsnI	GGCC	3 cut(s)	101, 344, 870
Bsp1286I	GDGCHC	1 cut(s)	616
Bsp13I	TCCGGA	2 cut(s)	818, 1050
Bsp143I	GATC	2 cut(s)	709, 746
Bsp1720I	GCTNAGC	1 cut(s)	255
BspACI	CCGC	2 cut(s)	405, 600
BspANI	GGCC	3 cut(s)	101, 344, 870
BspCNI	CTCAG	3 cut(s)	247, 453, 762
BspEI	TCCGGA	2 cut(s)	818, 1050
BspLI	GGNNCC	1 cut(s)	100
BspPI	GGATC	2 cut(s)	717, 754
BspQI	GCTCTTC	1 cut(s)	563
BspTI	CTTAAG	1 cut(s)	200
BsrDI	GCAATG	2 cut(s)	307, 550
BsrFI	RCCGGY	1 cut(s)	803
BsrI	ACTGG	2 cut(s)	25, 100
BssAI	RCCGGY	1 cut(s)	803
BssECI	CCNNGG	1 cut(s)	742
BssMI	GATC	2 cut(s)	709, 746
Bst2UI	CCWGG	5 cut(s)	62, 341, 360, 707, 744
Bst4CI	ACNGT	6 cut(s)	111, 237, 367, 526, 618, 1009
Bst6I	CTCTTC	2 cut(s)	563, 936
BstAFI	CTTAAG	1 cut(s)	200
BstC8I	GCNNGC	5 cut(s)	207, 333, 415, 554, 891
BstDEI	CTNAG	4 cut(s)	255, 461, 607, 770
BstENI	CCTNNNNNAGG	1 cut(s)	819
BstKTI	GATC	2 cut(s)	712, 749
BstMAI	GTCTC	1 cut(s)	457
BstMBI	GATC	2 cut(s)	709, 746
BstMWI	GCNNNNNNNGC	3 cut(s)	341, 549, 876
BstNI	CCWGG	5 cut(s)	62, 341, 360, 707, 744
BstNSI	RCATGY	1 cut(s)	556
BstSCI	CCNGG	5 cut(s)	60, 339, 358, 705, 742
BstSFI	CTRYAG	1 cut(s)	951
BstSLI	GKGCMC	1 cut(s)	616
BstV2I	GAAGAC	2 cut(s)	625, 953
BstX2I	RGATCY	2 cut(s)	709, 746
BstYI	RGATCY	2 cut(s)	709, 746
BsuRI	GGCC	3 cut(s)	101, 344, 870
BtsIMutI	CAGTG	3 cut(s)	18, 233, 614
Cac8I	GCNNGC	5 cut(s)	207, 333, 415, 554, 891
CaiI	CAGNNNCTG	2 cut(s)	371, 923
Cfr10I	RCCGGY	1 cut(s)	803
Cfr13I	GGNCC	1 cut(s)	99
Csp6I	GTAC	2 cut(s)	408, 807
CspAI	ACCGGT	1 cut(s)	803
CviAII	CATG	1 cut(s)	553
CviQI	GTAC	2 cut(s)	408, 807
DdeI	CTNAG	4 cut(s)	255, 461, 607, 770
DpnI	GATC	2 cut(s)	711, 748
DpnII	GATC	2 cut(s)	709, 746
Eam1104I	CTCTTC	2 cut(s)	563, 936
EarI	CTCTTC	2 cut(s)	563, 936
Eco32I	GATATC	1 cut(s)	902
Eco57I	CTGAAG	4 cut(s)	165, 200, 945, 957
EcoNI	CCTNNNNNAGG	1 cut(s)	819
EcoRII	CCWGG	5 cut(s)	60, 339, 358, 705, 742
EcoRV	GATATC	1 cut(s)	902
FaeI	CATG	1 cut(s)	556
FaiI	YATR	8 cut(s)	134, 212, 482, 554, 653, 738, 855, 953
FaqI	GGGAC	2 cut(s)	604, 769
FatI	CATG	1 cut(s)	552
FauI	CCCGC	1 cut(s)	607
FspBI	CTAG	7 cut(s)	153, 350, 434, 467, 504, 641, 1078
GsaI	CCCAGC	1 cut(s)	845
GsuI	CTGGAG	1 cut(s)	897
HaeIII	GGCC	3 cut(s)	101, 344, 870
HapII	CCGG	4 cut(s)	804, 819, 867, 1051
Hin1II	CATG	1 cut(s)	556
HindIII	AAGCTT	2 cut(s)	203, 676
HinfI	GANTC	7 cut(s)	73, 247, 450, 702, 757, 920, 1054
HpaII	CCGG	4 cut(s)	804, 819, 867, 1051
HphI	GGTGA	6 cut(s)	35, 529, 793, 823, 1015, 1020
Hpy166II	GTNNAC	3 cut(s)	476, 529, 614
Hpy188I	TCNGA	5 cut(s)	246, 328, 455, 462, 925
Hpy188III	TCNNGA	9 cut(s)	504, 671, 769, 819, 849, 935, 960, 1037, 1051
Hpy8I	GTNNAC	3 cut(s)	476, 529, 614
HpyAV	CCTTC	4 cut(s)	29, 189, 825, 847
HpyCH4III	ACNGT	6 cut(s)	111, 237, 367, 526, 618, 1009
HpyCH4V	TGCA	7 cut(s)	45, 126, 386, 417, 425, 614, 628
HpyF10VI	GCNNNNNNNGC	3 cut(s)	341, 549, 876
HpyF3I	CTNAG	4 cut(s)	255, 461, 607, 770
Hsp92II	CATG	1 cut(s)	556
Kpn2I	TCCGGA	2 cut(s)	818, 1050
Kzo9I	GATC	2 cut(s)	709, 746
LguI	GCTCTTC	1 cut(s)	563
LmnI	GCTCC	1 cut(s)	170
LweI	GCATC	3 cut(s)	54, 113, 854
MaeI	CTAG	7 cut(s)	153, 350, 434, 467, 504, 641, 1078
MaeIII	GTNAC	4 cut(s)	144, 773, 1003, 1026
MalI	GATC	2 cut(s)	711, 748
MboI	GATC	2 cut(s)	709, 746
MboII	GAAGA	6 cut(s)	550, 625, 719, 950, 953, 958
MfeI	CAATTG	1 cut(s)	696
MflI	RGATCY	2 cut(s)	709, 746
MhlI	GDGCHC	1 cut(s)	616
MluCI	AATT	3 cut(s)	229, 507, 696
MlyI	GAGTC	4 cut(s)	459, 711, 751, 914
MmeI	TCCRAC	1 cut(s)	478
MroI	TCCGGA	2 cut(s)	818, 1050
MroXI	GAANNNNTTC	2 cut(s)	367, 930
MseI	TTAA	2 cut(s)	201, 656
MslI	CAYNNNNRTG	2 cut(s)	131, 518
MspA1I	CMGCKG	1 cut(s)	254
MspCI	CTTAAG	1 cut(s)	200
MspI	CCGG	4 cut(s)	804, 819, 867, 1051
MspR9I	CCNGG	5 cut(s)	62, 341, 360, 707, 744
MunI	CAATTG	1 cut(s)	696
Mva1269I	GAATGC	1 cut(s)	879
MvaI	CCWGG	5 cut(s)	62, 341, 360, 707, 744
MwoI	GCNNNNNNNGC	3 cut(s)	341, 549, 876
NdeII	GATC	2 cut(s)	709, 746
NlaIII	CATG	1 cut(s)	556
NlaIV	GGNNCC	1 cut(s)	100
NmuCI	GTSAC	4 cut(s)	144, 773, 1003, 1026
NspI	RCATGY	1 cut(s)	556
PaeI	GCATGC	1 cut(s)	556
PciSI	GCTCTTC	1 cut(s)	563
PctI	GAATGC	1 cut(s)	879
PdmI	GAANNNNTTC	2 cut(s)	367, 930
PfeI	GAWTC	3 cut(s)	73, 247, 1054
PflMI	CCANNNNNTGG	1 cut(s)	896
PfoI	TCCNGGA	2 cut(s)	358, 705
PinAI	ACCGGT	1 cut(s)	803
PleI	GAGTC	4 cut(s)	458, 710, 751, 914
PpsI	GAGTC	4 cut(s)	458, 710, 751, 914
Psp6I	CCWGG	5 cut(s)	60, 339, 358, 705, 742
PspFI	CCCAGC	1 cut(s)	841
PspGI	CCWGG	5 cut(s)	60, 339, 358, 705, 742
PspN4I	GGNNCC	1 cut(s)	100
PspPI	GGNCC	1 cut(s)	99
PstNI	CAGNNNCTG	2 cut(s)	371, 923
PsuI	RGATCY	2 cut(s)	709, 746
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	2 cut(s)	409, 808
RsaNI	GTAC	2 cut(s)	408, 807
RseI	CAYNNNNRTG	2 cut(s)	131, 518
SapI	GCTCTTC	1 cut(s)	563
SaqAI	TTAA	2 cut(s)	201, 656
Sau3AI	GATC	2 cut(s)	709, 746
Sau96I	GGNCC	1 cut(s)	99
SchI	GAGTC	4 cut(s)	459, 711, 751, 914
ScrFI	CCNGG	5 cut(s)	62, 341, 360, 707, 744
SduI	GDGCHC	1 cut(s)	616
SfaNI	GCATC	3 cut(s)	54, 113, 854
SfcI	CTRYAG	1 cut(s)	951
SmiMI	CAYNNNNRTG	2 cut(s)	131, 518
SmlI	CTYRAG	2 cut(s)	200, 1061
SmoI	CTYRAG	2 cut(s)	200, 1061
SpeI	ACTAGT	1 cut(s)	433
SphI	GCATGC	1 cut(s)	556
Sse9I	AATT	3 cut(s)	229, 507, 696
SsiI	CCGC	2 cut(s)	405, 600
SspI	AATATT	1 cut(s)	667
SspMI	CTAG	7 cut(s)	153, 350, 434, 467, 504, 641, 1078
StyD4I	CCNGG	5 cut(s)	60, 339, 358, 705, 742
TaaI	ACNGT	6 cut(s)	111, 237, 367, 526, 618, 1009
TaqI	TCGA	2 cut(s)	780, 1038
TasI	AATT	3 cut(s)	229, 507, 696
TfiI	GAWTC	3 cut(s)	73, 247, 1054
Tru1I	TTAA	2 cut(s)	201, 656
Tru9I	TTAA	2 cut(s)	201, 656
TscAI	CASTG	3 cut(s)	25, 240, 621
TseFI	GTSAC	4 cut(s)	144, 773, 1003, 1026
Tsp45I	GTSAC	4 cut(s)	144, 773, 1003, 1026
TspDTI	ATGAA	1 cut(s)	476
TspGWI	ACGGA	1 cut(s)	486
TspRI	CASTG	3 cut(s)	25, 240, 621
Van91I	CCANNNNNTGG	1 cut(s)	896
Vha464I	CTTAAG	1 cut(s)	200
VneI	GTGCAC	1 cut(s)	612
XagI	CCTNNNNNAGG	1 cut(s)	819
XapI	RAATTY	1 cut(s)	507
XbaI	TCTAGA	1 cut(s)	503
XceI	RCATGY	1 cut(s)	556
XmnI	GAANNNNTTC	2 cut(s)	367, 930
XspI	CTAG	7 cut(s)	153, 350, 434, 467, 504, 641, 1078

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.