Rh5DG521600
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0002466
Physical Location & Seq
Forward (+)
80963392 .. 80964392
1001 bp
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UTR
Exon/CDS
Intron
Rh5DG521600.1

Sequence Viewer

Length: 903 bp
ATGATGGGTTTGTTCTGTTTTTTGGTTCTGCTTCTCTTTCACTCTCTAAATTTCACTTCAGCTGCTTCTAATGAGGATGTGGTGAAGAATCTTTTGTTGCAGTTCAAGCAATCCTCTGTTCAATCTGACCCTCATGGTTTCTTATCTGACTGGAAATATGATTCTTCAACTGCCCTTTGTTCATGGAAAGGCCTGACTTGCTCTGAAGGCCACGTCATCACCCTCGACCTCTCCTATTCTGGTCTCATTGGAAGTCTTGTAACAGTTGACTTGTCCTCCAACAACATCACAAGCCCTCTTCCGGTTCGGTCTTTTCTTGAGGGTTGTGAGAATCTGGCTTTGGTCAACCTCTCTAGCAATTCAATCCCAGGAGGGAGTTTCAGCTTTGGTGCTTCCTTGCTTCAGCTTGACATCTCTAGAAACCTGATTTCGGATTCATCCTTGTTGACTTGCCAGAATCTGAATCTGCTCAATGTTTCCGGTAACAAGCTGACCGGAAAACTGAGTGATTCTATCTTGTCTTGCAAGAATCTGACAACACTTGACCTTTCATACAATGCTTTATCTGGGGAGATACCCAACACTTTCCTGGAAAGCGGCTCTGCATCTCTCAAGTATTTGGATCTCTCAAGCAACAATTTCACTGGAAAGTTTGCAAGCCTTGATTTCGGGCAGTGTAGCAGCCTCACGTTGCTGAAGCTATCACACAATAATCTCTATGGGGATGAGTTTCCTTCAAGCCTTGCTAACTGTCAAGCTTTGGAGACACTGAACCTGACTAGTAATAAGTTGCAAGACAAAATTCCAGGTGCTTTGTTGGGAAATCTCAAGAAGTTGAGGCAACTCTTTCTGGGTCGCAATCAGTTTTCGGGTGAAATTCCAGCCGAATTAGGAAAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase

Protein Analysis

300

Amino Acids

32.26

Weight (kDa)

5.35

Isoelectric Point (pI)

32.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 31 - 68 1.7e-09 Leucine rich repeat N-terminal domain
LRR_8 PF13855 153 - 214 3.9e-06 Leucine rich repeat
LRR_4 PF12799 176 - 221 1.7e-06 Leucine Rich repeats (2 copies)
LRR_At1g61320_AtMIF1 PF23622 189 - 278 8.2e-06 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 597
AclWI GGATC 1 cut(s) 630
AcsI RAATTY 3 cut(s) 49, 801, 876
AcuI CTGAAG 4 cut(s) 42, 225, 386, 716
AfiI CCNNNNNNNGG 2 cut(s) 301, 430
AgsI TTSAA 5 cut(s) 106, 122, 168, 363, 738
AhlI ACTAGT 1 cut(s) 779
AjiI CACGTC 1 cut(s) 214
AjnI CCWGG 3 cut(s) 367, 588, 805
AjuI GAANNNNNNNTTGG 2 cut(s) 323, 355
AluBI AGCT 6 cut(s) 62, 384, 406, 490, 700, 758
AluI AGCT 6 cut(s) 62, 384, 406, 490, 700, 758
Alw26I GTCTC 2 cut(s) 248, 758
AlwI GGATC 1 cut(s) 630
AlwNI CAGNNNCTG 1 cut(s) 460
AoxI GGCC 2 cut(s) 190, 208
ApeKI GCWGC 2 cut(s) 62, 681
ApoI RAATTY 3 cut(s) 49, 801, 876
AsuHPI GGTGA 3 cut(s) 94, 211, 884
BbvI GCAGC 2 cut(s) 49, 693
BciT130I CCWGG 3 cut(s) 369, 590, 807
BcoDI GTCTC 2 cut(s) 248, 758
BcuI ACTAGT 1 cut(s) 779
BfaI CTAG 3 cut(s) 354, 417, 780
BisI GCNGC 3 cut(s) 63, 598, 682
BlsI GCNGC 3 cut(s) 64, 599, 683
Bme1390I CCNGG 3 cut(s) 369, 590, 807
BmgBI CACGTC 1 cut(s) 214
BmrFI CCNGG 3 cut(s) 369, 590, 807
BmsI GCATC 1 cut(s) 614
BpuEI CTTGAG 4 cut(s) 338, 596, 613, 812
BsaI GGTCTC 1 cut(s) 248
BsaJI CCNNGG 1 cut(s) 367
BsaWI WCCGGW 3 cut(s) 301, 479, 494
BsaXI ACNNNNNCTCC 2 cut(s) 260, 290
Bsc4I CCNNNNNNNGG 2 cut(s) 301, 430
Bse1I ACTGG 2 cut(s) 155, 649
BseBI CCWGG 3 cut(s) 369, 590, 807
BseDI CCNNGG 1 cut(s) 367
BseGI GGATG 3 cut(s) 82, 437, 730
BseLI CCNNNNNNNGG 2 cut(s) 301, 430
BseMII CTCAG 1 cut(s) 494
BseNI ACTGG 2 cut(s) 155, 649
BseXI GCAGC 2 cut(s) 49, 693
BshFI GGCC 2 cut(s) 192, 210
BsiSI CCGG 3 cut(s) 302, 480, 495
BslI CCNNNNNNNGG 2 cut(s) 301, 430
BsmAI GTCTC 2 cut(s) 248, 758
BsnI GGCC 2 cut(s) 192, 210
Bso31I GGTCTC 1 cut(s) 248
Bsp143I GATC 1 cut(s) 622
BspACI CCGC 1 cut(s) 597
BspANI GGCC 2 cut(s) 192, 210
BspCNI CTCAG 1 cut(s) 495
BspPI GGATC 1 cut(s) 630
BspTNI GGTCTC 1 cut(s) 248
BsrI ACTGG 2 cut(s) 155, 649
BssECI CCNNGG 1 cut(s) 367
BssMI GATC 1 cut(s) 622
Bst2UI CCWGG 3 cut(s) 369, 590, 807
Bst4CI ACNGT 2 cut(s) 265, 752
Bst6I CTCTTC 1 cut(s) 303
BstC8I GCNNGC 1 cut(s) 658
BstDEI CTNAG 1 cut(s) 503
BstF5I GGATG 3 cut(s) 82, 437, 730
BstKTI GATC 1 cut(s) 625
BstMAI GTCTC 2 cut(s) 248, 758
BstMBI GATC 1 cut(s) 622
BstMWI GCNNNNNNNGC 3 cut(s) 106, 198, 207
BstNI CCWGG 3 cut(s) 369, 590, 807
BstSCI CCNGG 3 cut(s) 367, 588, 805
BstV1I GCAGC 2 cut(s) 49, 693
BstX2I RGATCY 1 cut(s) 622
BstYI RGATCY 1 cut(s) 622
BsuRI GGCC 2 cut(s) 192, 210
BtrI CACGTC 1 cut(s) 214
BtsCI GGATG 3 cut(s) 82, 437, 730
BtsI GCAGTG 1 cut(s) 680
BtsIMutI CAGTG 3 cut(s) 642, 680, 767
Cac8I GCNNGC 1 cut(s) 658
CaiI CAGNNNCTG 1 cut(s) 460
CviAII CATG 2 cut(s) 134, 183
DdeI CTNAG 1 cut(s) 503
DpnI GATC 1 cut(s) 624
DpnII GATC 1 cut(s) 622
Eam1104I CTCTTC 1 cut(s) 303
EarI CTCTTC 1 cut(s) 303
Eco147I AGGCCT 1 cut(s) 192
Eco31I GGTCTC 1 cut(s) 248
Eco57I CTGAAG 4 cut(s) 42, 225, 386, 716
EcoRII CCWGG 3 cut(s) 367, 588, 805
FaeI CATG 2 cut(s) 137, 186
FaiI YATR 5 cut(s) 135, 159, 184, 553, 720
FatI CATG 2 cut(s) 133, 182
Fnu4HI GCNGC 3 cut(s) 63, 598, 682
FokI GGATG 3 cut(s) 89, 424, 737
Fsp4HI GCNGC 3 cut(s) 63, 598, 682
FspBI CTAG 3 cut(s) 354, 417, 780
GluI GCNGC 3 cut(s) 63, 598, 682
HaeIII GGCC 2 cut(s) 192, 210
HapII CCGG 3 cut(s) 302, 480, 495
Hin1II CATG 2 cut(s) 137, 186
HincII GTYRAC 3 cut(s) 268, 346, 447
HindII GTYRAC 3 cut(s) 268, 346, 447
HindIII AAGCTT 1 cut(s) 756
HinfI GANTC 8 cut(s) 88, 161, 331, 434, 457, 463, 509, 529
HpaII CCGG 3 cut(s) 302, 480, 495
HphI GGTGA 3 cut(s) 94, 211, 884
Hpy166II GTNNAC 3 cut(s) 268, 346, 447
Hpy188I TCNGA 6 cut(s) 127, 148, 205, 433, 462, 534
Hpy188III TCNNGA 3 cut(s) 317, 417, 829
Hpy8I GTNNAC 3 cut(s) 268, 346, 447
HpyAV CCTTC 2 cut(s) 200, 744
HpyCH4III ACNGT 2 cut(s) 265, 752
HpyCH4IV ACGT 2 cut(s) 213, 689
HpyCH4V TGCA 5 cut(s) 100, 525, 605, 656, 793
HpyF10VI GCNNNNNNNGC 3 cut(s) 106, 198, 207
HpyF3I CTNAG 1 cut(s) 503
HpySE526I ACGT 2 cut(s) 213, 689
Hsp92II CATG 2 cut(s) 137, 186
Kzo9I GATC 1 cut(s) 622
Lsp1109I GCAGC 2 cut(s) 49, 693
LweI GCATC 1 cut(s) 614
MaeI CTAG 3 cut(s) 354, 417, 780
MaeII ACGT 2 cut(s) 213, 689
MaeIII GTNAC 2 cut(s) 259, 482
MalI GATC 1 cut(s) 624
MboI GATC 1 cut(s) 622
MboII GAAGA 3 cut(s) 97, 156, 290
MflI RGATCY 1 cut(s) 622
MluCI AATT 6 cut(s) 49, 358, 637, 801, 876, 887
MmeI TCCRAC 1 cut(s) 303
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 3 cut(s) 302, 480, 495
MspR9I CCNGG 3 cut(s) 369, 590, 807
MvaI CCWGG 3 cut(s) 369, 590, 807
MwoI GCNNNNNNNGC 3 cut(s) 106, 198, 207
NdeII GATC 1 cut(s) 622
NlaIII CATG 2 cut(s) 137, 186
PceI AGGCCT 1 cut(s) 192
PfeI GAWTC 8 cut(s) 88, 161, 331, 434, 457, 463, 509, 529
PfoI TCCNGGA 1 cut(s) 588
PkrI GCNGC 3 cut(s) 64, 599, 683
Psp6I CCWGG 3 cut(s) 367, 588, 805
PspGI CCWGG 3 cut(s) 367, 588, 805
PstNI CAGNNNCTG 1 cut(s) 460
PsuI RGATCY 1 cut(s) 622
PvuII CAGCTG 1 cut(s) 62
SatI GCNGC 3 cut(s) 63, 598, 682
Sau3AI GATC 1 cut(s) 622
ScrFI CCNGG 3 cut(s) 369, 590, 807
SfaNI GCATC 1 cut(s) 614
SmlI CTYRAG 4 cut(s) 317, 611, 628, 827
SmoI CTYRAG 4 cut(s) 317, 611, 628, 827
SpeI ACTAGT 1 cut(s) 779
Sse9I AATT 6 cut(s) 49, 358, 637, 801, 876, 887
SseBI AGGCCT 1 cut(s) 192
SsiI CCGC 1 cut(s) 597
SspMI CTAG 3 cut(s) 354, 417, 780
StuI AGGCCT 1 cut(s) 192
StyD4I CCNGG 3 cut(s) 367, 588, 805
TaaI ACNGT 2 cut(s) 265, 752
TaiI ACGT 2 cut(s) 216, 692
TaqI TCGA 1 cut(s) 225
TaqII GACCGA 1 cut(s) 297
TasI AATT 6 cut(s) 49, 358, 637, 801, 876, 887
TauI GCSGC 1 cut(s) 600
TfiI GAWTC 8 cut(s) 88, 161, 331, 434, 457, 463, 509, 529
TscAI CASTG 3 cut(s) 649, 680, 774
TseI GCWGC 2 cut(s) 62, 681
TspDTI ATGAA 3 cut(s) 171, 426, 540
TspRI CASTG 3 cut(s) 649, 680, 774
XapI RAATTY 3 cut(s) 49, 801, 876
XbaI TCTAGA 1 cut(s) 416
XcmI CCANNNNNNNNNTGG 1 cut(s) 586
XspI CTAG 3 cut(s) 354, 417, 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.