Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002671

Physical Location & Seq

Genomic Coordinates Reverse (-)

5678334 .. 5679380

Gene Structure 1047 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g06400.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGGATTTCTACTTCTATGCTATTATCGATTCCTCCTCCTTAGAGCTAAGCAATTCTGGGTGGAACTAGTTTATTTTGTCACCCTCTCCTTTTTGGGTTATTGGGTTCTCAAGGTATTGCCAGTTAGAACCACCGACTCTTTTACCCCTAGGAACTTAGATTTGTTCTTCGCCTCAGTTTCTGCCACAACCGTTTCGAGCATGTCCACAGTTGAAATGGAGGTCTTCTCCAATGACCAGCTCATCGTAATGACCATCCAAATGTTCATAGGTGGGGAGGTCTTCACCTCCATGGTTGGACTCCATTTCAAGAAGTTCAAGCTCATGATGATGAGCACAAAAGAGAAGATTGCTTCAGTTAACAGCTCTTCTTCATCAAGTTCCGCAAGGGCGATTGATGAAAATATCGAATTGGGTTTGGCGATCAAGCCCGAATTTCCTAAGGACCAATCTGATCAAATTCCAGCAGTAAATGATCAATCCTTGAAACTTCAAAATTCCATTGAGCTTTTGGGTTACGTTGTTTTAGCTTATCTTCTTGTGGTTCATTTCCTGGGGGTGGCTATGGTTTTGGTTTATCTAGCCTTTACTTCAAGTGCAAGAAACATAGTAAAGAACAAGGGCCTAAATGTTCATACATTCTCATTCTTCACCACAGTTTCAACTTTCTCAAGCTGTGGTTTTGTTCCCACCAATGAAAACATGATTGTCTTCAGCAAAAACTCAGGTCTCCTCCTAATACTCATTCCTCAAGTTCTTCTTGGAAACAAACTGTATCCATCTTGCTTGAGATATACAGTTTGGCTTTTGGGGAAACTTTTCAAAAAGCAAACAGACTCGTGCAATTACCTATTGAAGAACACAAAGGAGGTTGGATACCTACACTTGCTTCCTACTCCGCACTCGTCACTCTTGGTTGTTACAGTTTTTGGGTTCATCCTGGTACAACTTGTACCTTTTGCCATCATGGAATGGAGTTCCGAAAGCTTAAGTGGACTTAATTCTTTCCAGAAAATCATTGGATCTTTGTTCCAAACCGTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006814 GO:0008150 GO:0008324 GO:0015075 GO:0015077 GO:0015081 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0035725 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TrkH

Protein Analysis

349

Amino Acids

39.04

Weight (kDa)

9.02

Isoelectric Point (pI)

33.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TrkH	PF02386	166 - 347	6.8e-11	Cation transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10310
fragaria_vesca	FvH4_4g06400 FvH4_4g06412 FvH4_4g06420 FvH4_4g06420 FvH4_4g06420 FvH4_4g06420
malus_domestica	MD16G1240400.v1.1
prunus_persica	Prupe.1G066800_v2.0.a1 Prupe.1G067100_v2.0.a1
pyrus_communis	pycom16g20110
rosa_chinensis	RchiOBHm_Chr4g0398141 RchiOBHm_Chr4g0398151
rosa_laevigata	RLG00000009382 RLG00000009383 RLG00000035139
rosa_multiflora	Rmu_sc0002035.1_g000011 Rmu_sc0002378.1_g000014 Rmu_sc0002378.1_g000025 Rmu_sc0008195.1_g000011 Rmu_sc0023295.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023290 Rroxscaffold_5G00343040 Rroxscaffold_5G00343070
rosa_rugosa	Rorug04G0006300 Rorug04G0006600 Rorug05G0304200
rosa_samantha	Rh4AG083400 Rh4AG083500 Rh4BG081100 Rh4BG081300 Rh4CG090400 Rh4CG090600 Rh4DG076000 Rh4DG076300 Rh5BG384700 Rh5DG398100
rosa_wichuraiana	Rw4G006930 Rw4G006940 Rw5G035170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	384, 899
AclWI	GGATC	1 cut(s)	1030
AcsI	RAATTY	3 cut(s)	434, 459, 496
AcuI	CTGAAG	2 cut(s)	339, 697
AfaI	GTAC	2 cut(s)	945, 954
AfiI	CCNNNNNNNGG	1 cut(s)	559
AflII	CTTAAG	1 cut(s)	988
AgsI	TTSAA	9 cut(s)	215, 310, 319, 487, 494, 594, 663, 823, 856
AhlI	ACTAGT	1 cut(s)	67
AjnI	CCWGG	2 cut(s)	552, 939
AluBI	AGCT	8 cut(s)	47, 241, 322, 366, 508, 530, 675, 987
AluI	AGCT	8 cut(s)	47, 241, 322, 366, 508, 530, 675, 987
Alw21I	GWGCWC	1 cut(s)	338
Alw26I	GTCTC	1 cut(s)	734
AlwI	GGATC	1 cut(s)	1030
AlwNI	CAGNNNCTG	1 cut(s)	182
AoxI	GGCC	1 cut(s)	622
ApoI	RAATTY	3 cut(s)	434, 459, 496
Asp700I	GAANNNNTTC	1 cut(s)	818
AspA2I	CCTAGG	1 cut(s)	149
AspS9I	GGNCC	2 cut(s)	445, 622
AsuHPI	GGTGA	3 cut(s)	73, 277, 643
AvaII	GGWCC	1 cut(s)	445
AvrII	CCTAGG	1 cut(s)	149
AxyI	CCTNAGG	1 cut(s)	441
BauI	CACGAG	1 cut(s)	838
BbsI	GAAGAC	3 cut(s)	217, 274, 703
Bbv12I	GWGCWC	1 cut(s)	338
BccI	CCATC	3 cut(s)	263, 787, 971
BciT130I	CCWGG	2 cut(s)	554, 941
BciVI	GTATCC	2 cut(s)	786, 869
BclI	TGATCA	2 cut(s)	454, 475
BcoDI	GTCTC	1 cut(s)	734
BcuI	ACTAGT	1 cut(s)	67
BfaI	CTAG	3 cut(s)	68, 150, 581
BfrI	CTTAAG	1 cut(s)	988
BfuI	GTATCC	2 cut(s)	786, 869
BlnI	CCTAGG	1 cut(s)	149
BlpI	GCTNAGC	1 cut(s)	48
Bme1390I	CCNGG	2 cut(s)	554, 941
Bme18I	GGWCC	1 cut(s)	445
BmgT120I	GGNCC	2 cut(s)	445, 622
BmrFI	CCNGG	2 cut(s)	554, 941
BpiI	GAAGAC	3 cut(s)	217, 274, 703
BplI	GAGNNNNNCTC	2 cut(s)	212, 244
Bpu1102I	GCTNAGC	1 cut(s)	48
BpuEI	CTTGAG	4 cut(s)	95, 655, 735, 808
Bsa29I	ATCGAT	1 cut(s)	28
BsaI	GGTCTC	1 cut(s)	734
BsaJI	CCNNGG	3 cut(s)	149, 291, 553
Bsc4I	CCNNNNNNNGG	1 cut(s)	559
Bse1I	ACTGG	1 cut(s)	122
Bse21I	CCTNAGG	1 cut(s)	441
BseBI	CCWGG	2 cut(s)	554, 941
BseCI	ATCGAT	1 cut(s)	28
BseDI	CCNNGG	3 cut(s)	149, 291, 553
BseGI	GGATG	2 cut(s)	255, 936
BseLI	CCNNNNNNNGG	1 cut(s)	559
BseMII	CTCAG	2 cut(s)	189, 738
BseNI	ACTGG	1 cut(s)	122
BseRI	GAGGAG	2 cut(s)	26, 722
BshFI	GGCC	1 cut(s)	624
BshVI	ATCGAT	1 cut(s)	28
BsiHKAI	GWGCWC	1 cut(s)	338
BslI	CCNNNNNNNGG	1 cut(s)	559
BsmAI	GTCTC	1 cut(s)	734
BsnI	GGCC	1 cut(s)	624
Bso31I	GGTCTC	1 cut(s)	734
Bsp1286I	GDGCHC	1 cut(s)	338
Bsp143I	GATC	4 cut(s)	423, 454, 475, 1022
Bsp1720I	GCTNAGC	1 cut(s)	48
Bsp19I	CCATGG	1 cut(s)	291
BspACI	CCGC	2 cut(s)	384, 899
BspANI	GGCC	1 cut(s)	624
BspCNI	CTCAG	2 cut(s)	188, 737
BspDI	ATCGAT	1 cut(s)	28
BspHI	TCATGA	1 cut(s)	324
BspPI	GGATC	1 cut(s)	1030
BspQI	GCTCTTC	1 cut(s)	373
BspTI	CTTAAG	1 cut(s)	988
BspTNI	GGTCTC	1 cut(s)	734
BsrI	ACTGG	1 cut(s)	122
BssECI	CCNNGG	3 cut(s)	149, 291, 553
BssMI	GATC	4 cut(s)	423, 454, 475, 1022
BssSI	CACGAG	1 cut(s)	838
BssT1I	CCWWGG	2 cut(s)	149, 291
Bst2BI	CACGAG	1 cut(s)	838
Bst2UI	CCWGG	2 cut(s)	554, 941
Bst4CI	ACNGT	7 cut(s)	193, 211, 658, 774, 799, 925, 1039
Bst6I	CTCTTC	1 cut(s)	373
BstAFI	CTTAAG	1 cut(s)	988
BstDEI	CTNAG	6 cut(s)	41, 48, 157, 175, 441, 724
BstDSI	CCRYGG	1 cut(s)	291
BstF5I	GGATG	2 cut(s)	255, 936
BstKTI	GATC	4 cut(s)	426, 457, 478, 1025
BstMAI	GTCTC	1 cut(s)	734
BstMBI	GATC	4 cut(s)	423, 454, 475, 1022
BstNI	CCWGG	2 cut(s)	554, 941
BstNSI	RCATGY	1 cut(s)	205
BstSCI	CCNGG	2 cut(s)	552, 939
BstV2I	GAAGAC	3 cut(s)	217, 274, 703
BstX2I	RGATCY	1 cut(s)	1022
BstYI	RGATCY	1 cut(s)	1022
Bsu15I	ATCGAT	1 cut(s)	28
Bsu36I	CCTNAGG	1 cut(s)	441
BsuI	GTATCC	2 cut(s)	786, 869
BsuRI	GGCC	1 cut(s)	624
BsuTUI	ATCGAT	1 cut(s)	28
BtgI	CCRYGG	1 cut(s)	291
BtsCI	GGATG	2 cut(s)	255, 936
CaiI	CAGNNNCTG	1 cut(s)	182
CciI	TCATGA	1 cut(s)	324
Cfr13I	GGNCC	2 cut(s)	445, 622
ClaI	ATCGAT	1 cut(s)	28
Csp6I	GTAC	2 cut(s)	944, 953
CviAII	CATG	5 cut(s)	202, 292, 325, 703, 967
CviQI	GTAC	2 cut(s)	944, 953
DdeI	CTNAG	6 cut(s)	41, 48, 157, 175, 441, 724
DpnI	GATC	4 cut(s)	425, 456, 477, 1024
DpnII	GATC	4 cut(s)	423, 454, 475, 1022
Eam1104I	CTCTTC	1 cut(s)	373
EarI	CTCTTC	1 cut(s)	373
Eco130I	CCWWGG	2 cut(s)	149, 291
Eco31I	GGTCTC	1 cut(s)	734
Eco47I	GGWCC	1 cut(s)	445
Eco57I	CTGAAG	2 cut(s)	339, 697
Eco81I	CCTNAGG	1 cut(s)	441
EcoO109I	RGGNCCY	1 cut(s)	622
EcoRII	CCWGG	2 cut(s)	552, 939
EcoT14I	CCWWGG	2 cut(s)	149, 291
ErhI	CCWWGG	2 cut(s)	149, 291
FaeI	CATG	5 cut(s)	205, 295, 328, 706, 970
FalI	AAGNNNNNCTT	2 cut(s)	744, 776
FatI	CATG	5 cut(s)	201, 291, 324, 702, 966
FbaI	TGATCA	2 cut(s)	454, 475
FokI	GGATG	2 cut(s)	242, 923
FspBI	CTAG	3 cut(s)	68, 150, 581
HaeIII	GGCC	1 cut(s)	624
Hin1II	CATG	5 cut(s)	205, 295, 328, 706, 970
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HindIII	AAGCTT	1 cut(s)	985
HinfI	GANTC	4 cut(s)	30, 137, 300, 836
HpaI	GTTAAC	1 cut(s)	361
HphI	GGTGA	3 cut(s)	73, 277, 643
Hpy166II	GTNNAC	3 cut(s)	207, 361, 995
Hpy188I	TCNGA	2 cut(s)	454, 982
Hpy188III	TCNNGA	3 cut(s)	310, 325, 1009
Hpy8I	GTNNAC	3 cut(s)	207, 361, 995
HpyCH4III	ACNGT	7 cut(s)	193, 211, 658, 774, 799, 925, 1039
HpyCH4IV	ACGT	1 cut(s)	519
HpyCH4V	TGCA	2 cut(s)	599, 843
HpyF3I	CTNAG	6 cut(s)	41, 48, 157, 175, 441, 724
HpySE526I	ACGT	1 cut(s)	519
Hsp92II	CATG	5 cut(s)	205, 295, 328, 706, 970
Ksp22I	TGATCA	2 cut(s)	454, 475
KspAI	GTTAAC	1 cut(s)	361
Kzo9I	GATC	4 cut(s)	423, 454, 475, 1022
LguI	GCTCTTC	1 cut(s)	373
MaeI	CTAG	3 cut(s)	68, 150, 581
MaeII	ACGT	1 cut(s)	519
MaeIII	GTNAC	4 cut(s)	79, 515, 906, 919
MalI	GATC	4 cut(s)	425, 456, 477, 1024
MboI	GATC	4 cut(s)	423, 454, 475, 1022
MflI	RGATCY	1 cut(s)	1022
MhlI	GDGCHC	1 cut(s)	338
MluCI	AATT	8 cut(s)	53, 410, 434, 459, 496, 844, 1000, 1042
MlyI	GAGTC	3 cut(s)	131, 294, 830
MmeI	TCCRAC	2 cut(s)	277, 853
MroXI	GAANNNNTTC	1 cut(s)	818
MseI	TTAA	4 cut(s)	360, 989, 999, 1045
MslI	CAYNNNNRTG	4 cut(s)	248, 260, 290, 329
MspCI	CTTAAG	1 cut(s)	988
MspR9I	CCNGG	2 cut(s)	554, 941
MvaI	CCWGG	2 cut(s)	554, 941
NcoI	CCATGG	1 cut(s)	291
NdeII	GATC	4 cut(s)	423, 454, 475, 1022
NlaIII	CATG	5 cut(s)	205, 295, 328, 706, 970
NmuCI	GTSAC	2 cut(s)	79, 906
NspI	RCATGY	1 cut(s)	205
PagI	TCATGA	1 cut(s)	324
PciSI	GCTCTTC	1 cut(s)	373
PdmI	GAANNNNTTC	1 cut(s)	818
PfeI	GAWTC	1 cut(s)	30
PleI	GAGTC	3 cut(s)	131, 294, 830
PpsI	GAGTC	3 cut(s)	131, 294, 830
Psp6I	CCWGG	2 cut(s)	552, 939
PspGI	CCWGG	2 cut(s)	552, 939
PspPI	GGNCC	2 cut(s)	445, 622
PstNI	CAGNNNCTG	1 cut(s)	182
PsuI	RGATCY	1 cut(s)	1022
RsaI	GTAC	2 cut(s)	945, 954
RsaNI	GTAC	2 cut(s)	944, 953
RseI	CAYNNNNRTG	4 cut(s)	248, 260, 290, 329
SapI	GCTCTTC	1 cut(s)	373
SaqAI	TTAA	4 cut(s)	360, 989, 999, 1045
Sau3AI	GATC	4 cut(s)	423, 454, 475, 1022
Sau96I	GGNCC	2 cut(s)	445, 622
SchI	GAGTC	3 cut(s)	131, 294, 830
ScrFI	CCNGG	2 cut(s)	554, 941
SduI	GDGCHC	1 cut(s)	338
SinI	GGWCC	1 cut(s)	445
SmiMI	CAYNNNNRTG	4 cut(s)	248, 260, 290, 329
SmlI	CTYRAG	5 cut(s)	110, 670, 750, 787, 988
SmoI	CTYRAG	5 cut(s)	110, 670, 750, 787, 988
SpeI	ACTAGT	1 cut(s)	67
Sse9I	AATT	8 cut(s)	53, 410, 434, 459, 496, 844, 1000, 1042
SsiI	CCGC	2 cut(s)	384, 899
SspMI	CTAG	3 cut(s)	68, 150, 581
StyD4I	CCNGG	2 cut(s)	552, 939
StyI	CCWWGG	2 cut(s)	149, 291
TaaI	ACNGT	7 cut(s)	193, 211, 658, 774, 799, 925, 1039
TaiI	ACGT	1 cut(s)	522
TaqI	TCGA	3 cut(s)	28, 197, 408
TasI	AATT	8 cut(s)	53, 410, 434, 459, 496, 844, 1000, 1042
TfiI	GAWTC	1 cut(s)	30
Tru1I	TTAA	4 cut(s)	360, 989, 999, 1045
Tru9I	TTAA	4 cut(s)	360, 989, 999, 1045
TseFI	GTSAC	2 cut(s)	79, 906
Tsp45I	GTSAC	2 cut(s)	79, 906
TspDTI	ATGAA	7 cut(s)	256, 363, 414, 536, 623, 711, 925
Vha464I	CTTAAG	1 cut(s)	988
VpaK11BI	GGWCC	1 cut(s)	445
XapI	RAATTY	3 cut(s)	434, 459, 496
XceI	RCATGY	1 cut(s)	205
XcmI	CCANNNNNNNNNTGG	3 cut(s)	214, 508, 1016
XmaJI	CCTAGG	1 cut(s)	149
XmnI	GAANNNNTTC	1 cut(s)	818
XspI	CTAG	3 cut(s)	68, 150, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.