Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008195.1

Orthogroup ID

OG0002671

Physical Location & Seq

Genomic Coordinates Forward (+)

26639 .. 27922

Gene Structure 1284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008195.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

atggtctctgtcctgggttatttggctttgagggtcacaaaaccaagaactagaacttcctttaggcccaaggattttgatttgttcttcacatctgtgtcttccacaacagtagcaagcatgtcaactgtagaaatggaggtcttttcaaacatccaactcatcattatgaccattttgatgctagcgggtggagaggttttcacttccttgcttggacttcaaattgcaaggtccaagattgccaaatttcatgataacaaagttgatgtagaactcagctcttctaataaggcctcctttgatcgaatagaatttcatgataacaaagttgatgtagaactcagctcttctaataaggcctcctttgatcgaatagaatttcatgataacaaagttgatgtagaactcagctcttctaataaggcctcctttgatcgaatagaatttcatgataacaaagttgatgtagaactcagctcttctaataaggcctcctttgatcgaatagaatttcatgataacaaagttgatgtagaactcagctcttctaataaggcctcctttgatcgaatagaatttcatgataacaaagttgatgtagaactcagctcttctaataaggcctcctttgatcgaatagaatttcatgataacaaagttgatgtagaactcagctcttctaataaggcctcctttgatcgaatagaatttcatgataacaaagttgatgtagaactcagctcttctaataaggcctcctttgatcgaatagaatttcatgataacaaagttgatgtagaactcagctcttctaataaggcctcctttgatcgaatagaatttcatgataacaaagttgatgtagaactcagctcttctaataaggcctcctttgatcgaatagaatttcatgataacaaagttgatgtagaactcagctcttctaataaggcctcctttgatcgaatagaatttcatgataacaaagttgatgtagaactcagctcttctaataaggcctcctttgatcgaatagaatttcatgataacaaagttgatgtagaactcagctcttctaataaggcctcctttgatcgaatagaatttcatgataacaaagttgatgtagaactcaactcttctaataaggcctccttcgatcgaatagagttaggtttggttaccctttcacagttagagagtcatgcatcatttgtgagacccacttttcgatcatatttcgacatctcgactgttcagtttttaggttccaatgtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006950 GO:0006970 GO:0008150 GO:0008324 GO:0009628 GO:0009651 GO:0015075 GO:0015077 GO:0015081 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0035725 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TrkH

Protein Analysis

427

Amino Acids

48.47

Weight (kDa)

5.05

Isoelectric Point (pI)

53.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10310
fragaria_vesca	FvH4_4g06400 FvH4_4g06412 FvH4_4g06420 FvH4_4g06420 FvH4_4g06420 FvH4_4g06420
malus_domestica	MD16G1240400.v1.1
prunus_persica	Prupe.1G066800_v2.0.a1 Prupe.1G067100_v2.0.a1
pyrus_communis	pycom16g20110
rosa_chinensis	RchiOBHm_Chr4g0398141 RchiOBHm_Chr4g0398151
rosa_laevigata	RLG00000009382 RLG00000009383 RLG00000035139
rosa_multiflora	Rmu_sc0002035.1_g000011 Rmu_sc0002378.1_g000014 Rmu_sc0002378.1_g000025 Rmu_sc0008195.1_g000011 Rmu_sc0023295.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023290 Rroxscaffold_5G00343040 Rroxscaffold_5G00343070
rosa_rugosa	Rorug04G0006300 Rorug04G0006600 Rorug05G0304200
rosa_samantha	Rh4AG083400 Rh4AG083500 Rh4BG081100 Rh4BG081300 Rh4CG090400 Rh4CG090600 Rh4DG076000 Rh4DG076300 Rh5BG384700 Rh5DG398100
rosa_wichuraiana	Rw4G006930 Rw4G006940 Rw5G035170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	188
AgsI	TTSAA	2 cut(s)	150, 224
AjnI	CCWGG	1 cut(s)	12
AleI	CACNNNNGTG	1 cut(s)	95
Alw26I	GTCTC	2 cut(s)	10, 1216
ArsI	GACNNNNNNTTYG	2 cut(s)	1215, 1247
AspS9I	GGNCC	2 cut(s)	66, 234
AsuNHI	GCTAGC	1 cut(s)	184
AvaII	GGWCC	1 cut(s)	234
BbsI	GAAGAC	1 cut(s)	93
BciT130I	CCWGG	1 cut(s)	14
BcoDI	GTCTC	2 cut(s)	10, 1216
BfaI	CTAG	2 cut(s)	51, 185
BfmI	CTRYAG	1 cut(s)	129
Bme1390I	CCNGG	1 cut(s)	14
Bme18I	GGWCC	1 cut(s)	234
BmgT120I	GGNCC	2 cut(s)	66, 234
BmiI	GGNNCC	1 cut(s)	1273
BmrFI	CCNGG	1 cut(s)	14
BmsI	GCATC	2 cut(s)	171, 1220
BmtI	GCTAGC	1 cut(s)	188
BpiI	GAAGAC	1 cut(s)	93
BsaI	GGTCTC	2 cut(s)	10, 1216
BsaJI	CCNNGG	2 cut(s)	13, 69
BseBI	CCWGG	1 cut(s)	14
BseDI	CCNNGG	2 cut(s)	13, 69
BseGI	GGATG	1 cut(s)	153
Bsh1285I	CGRYCG	1 cut(s)	1165
BsiEI	CGRYCG	1 cut(s)	1165
BsmAI	GTCTC	2 cut(s)	10, 1216
Bso31I	GGTCTC	2 cut(s)	10, 1216
BspACI	CCGC	1 cut(s)	188
BspLI	GGNNCC	1 cut(s)	1273
BspOI	GCTAGC	1 cut(s)	188
BspTNI	GGTCTC	2 cut(s)	10, 1216
BssECI	CCNNGG	2 cut(s)	13, 69
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	14
Bst4CI	ACNGT	4 cut(s)	112, 130, 1197, 1258
BstC8I	GCNNGC	2 cut(s)	118, 186
BstEII	GGTNACC	1 cut(s)	1183
BstF5I	GGATG	1 cut(s)	153
BstMAI	GTCTC	2 cut(s)	10, 1216
BstMCI	CGRYCG	1 cut(s)	1165
BstNI	CCWGG	1 cut(s)	14
BstNSI	RCATGY	1 cut(s)	124
BstPI	GGTNACC	1 cut(s)	1183
BstSCI	CCNGG	1 cut(s)	12
BstSFI	CTRYAG	1 cut(s)	129
BstV2I	GAAGAC	1 cut(s)	93
BtsCI	GGATG	1 cut(s)	153
Cac8I	GCNNGC	2 cut(s)	118, 186
Cfr13I	GGNCC	2 cut(s)	66, 234
Eco130I	CCWWGG	1 cut(s)	69
Eco31I	GGTCTC	2 cut(s)	10, 1216
Eco47I	GGWCC	1 cut(s)	234
Eco91I	GGTNACC	1 cut(s)	1183
EcoO65I	GGTNACC	1 cut(s)	1183
EcoRII	CCWGG	1 cut(s)	12
EcoT14I	CCWWGG	1 cut(s)	69
EcoT22I	ATGCAT	1 cut(s)	1213
ErhI	CCWWGG	1 cut(s)	69
FauI	CCCGC	1 cut(s)	181
FokI	GGATG	1 cut(s)	140
FspBI	CTAG	2 cut(s)	51, 185
HincII	GTYRAC	1 cut(s)	126
HindII	GTYRAC	1 cut(s)	126
HinfI	GANTC	1 cut(s)	1204
Hpy166II	GTNNAC	1 cut(s)	126
Hpy8I	GTNNAC	1 cut(s)	126
HpyAV	CCTTC	1 cut(s)	1168
HpyCH4III	ACNGT	4 cut(s)	112, 130, 1197, 1258
HpyCH4V	TGCA	2 cut(s)	230, 1211
LpnPI	CCDG	1 cut(s)	26
LweI	GCATC	2 cut(s)	171, 1220
MaeI	CTAG	2 cut(s)	51, 185
MaeIII	GTNAC	2 cut(s)	34, 1183
MlyI	GAGTC	1 cut(s)	1213
MmeI	TCCRAC	1 cut(s)	181
Mph1103I	ATGCAT	1 cut(s)	1213
MslI	CAYNNNNRTG	3 cut(s)	95, 167, 179
MspR9I	CCNGG	1 cut(s)	14
MvaI	CCWGG	1 cut(s)	14
NheI	GCTAGC	1 cut(s)	184
NlaIV	GGNNCC	1 cut(s)	1273
NmuCI	GTSAC	1 cut(s)	34
NsiI	ATGCAT	1 cut(s)	1213
NspI	RCATGY	1 cut(s)	124
OliI	CACNNNNGTG	1 cut(s)	95
Ple19I	CGATCG	1 cut(s)	1165
PleI	GAGTC	1 cut(s)	1212
PpsI	GAGTC	1 cut(s)	1212
Psp6I	CCWGG	1 cut(s)	12
PspEI	GGTNACC	1 cut(s)	1183
PspGI	CCWGG	1 cut(s)	12
PspN4I	GGNNCC	1 cut(s)	1273
PspPI	GGNCC	2 cut(s)	66, 234
PvuI	CGATCG	1 cut(s)	1165
RseI	CAYNNNNRTG	3 cut(s)	95, 167, 179
Sau96I	GGNCC	2 cut(s)	66, 234
SchI	GAGTC	1 cut(s)	1213
ScrFI	CCNGG	1 cut(s)	14
SfaNI	GCATC	2 cut(s)	171, 1220
SfcI	CTRYAG	1 cut(s)	129
SinI	GGWCC	1 cut(s)	234
SmiMI	CAYNNNNRTG	3 cut(s)	95, 167, 179
SsiI	CCGC	1 cut(s)	188
SspMI	CTAG	2 cut(s)	51, 185
StyD4I	CCNGG	1 cut(s)	12
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	4 cut(s)	112, 130, 1197, 1258
TseFI	GTSAC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	34
VpaK11BI	GGWCC	1 cut(s)	234
XceI	RCATGY	1 cut(s)	124
XspI	CTAG	2 cut(s)	51, 185
Zsp2I	ATGCAT	1 cut(s)	1213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.