Rh4DG076000

Cation transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0002671
Physical Location & Seq
Reverse (-)
11194110 .. 11198556
4447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG076000.1

Sequence Viewer

Length: 1452 bp
ATGAACAGCTATGCTTGTTTTGGCCAGAAATTGCACCACCTTTGCACTTGTTCATTTCTCAAACTAGCATTTCTTAGCCAATCCATGGGATTTCTACTTCTATGCTATTATCGATTTCTCCTTCTTAGAGCTAAGCAATTCTGGGTGGAACTAGTTTATTTTGTCACCCTTTCCTTTTTGGGTTATTGGGTTCTAAAGGTATTGCCAGTTAGAACCACCGACTCTTTTACCCCTAGGAACTTAGATTTGTTCTTCACCTCAGTTTCTGCCACAACCGTTTCGAGCATGTCCACAGTTGAAATGGAGGTCTTCTCCAATGGCCAGCTCATCTTAATGACCATCCTAATGTTCATAGGTGGGGAGGTCTTCACCTCCATGGTTGGACTTCATTTCAAGAAATTCAAGCTCATGATGATGATGAGCACAAAAGAGAAGATTGCTTCAGTTAACAGCGATGTTAGCTCTTCATCAAGTCCCGCAAAGGCGATTGATGAGAATATTGAATTGGGCTTGGCAATCAAGCCCGAATTTCCTCATGACCAAATTGGTATAATTGCAGCAGTAGATGATCAATCCTTGACACTTCAGAATTCCATTAACCTTTTGGGTTACGTTGTTTTAGCTTATCTTCTAGTGGTTCATTTCCTTGGGGTGGCTATGGTTTTGGTTTATCTATCATTTACTTCAAGTGCAAGAAACGTAGTAAAGAACAAGGGGATAAATGTTCATACATTCTCATTGTTCACCACAGTTTCAACTTTCTCAAGTTGTGGTTTTGTTCCCACCAATGAAAACATGATTGTCTTTAGCAAAAACTCCGGTCTCCTTCTAATACTCATTCCTCAAGTCCTTCTTGGGAACACATTGTATCCATCTTGCTTGAGATTTTCAATTTGGCTTTTGGGAAAAATTTTCAAAAAGCAAAGAGATTCTTGCAATTACCTGTTGAAGAACACAAAGGAGGTTGGATACCTACACTTGCTTCCTAGTCTGCACTCATCACTCTTGGTCGTTACAGTTTTTGGGTTCATCCTGGTACAACTTCTACCTTTTGCCTCCATGGAGTGGAGTTCAGAAAGCTTAAGTGGACTTAATTCTTACCAGAAAATCATTGGATCTTTGTTCCAAACCGTCAATTCAAGACATACCGGTGAAACCATCGTCGACCTCTCCATCATTTCTCCCGCAATCTTGGTATTATTCATCGTGATGATGTATCTTCCTCCTTACACTTCGTTTCTCCCCGCTATAGAAAATGATCGATATGATCTACAATCTCATGATCAGAGGAAGAAAAAGAGAAGAGGAAAGCTCATGGATAATCTCATATTCTCACAGCTCTCCTATTTGACCATATTTATCATTTTAGTCTGCATAACGGAGAGGAAAAGCTTGAAAGAAGATCCCCTCAATTTCAATGTACTCAATATCGTGCTTGAAGTCATCAGGTAA

Protein Analysis

483

Amino Acids

54.5

Weight (kDa)

9.01

Isoelectric Point (pI)

37.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TrkH PF02386 198 - 482 3.3e-22 Cation transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 85, 1065
AccI GTMKAC 1 cut(s) 1164
AciI CCGC 3 cut(s) 477, 1185, 1245
AclWI GGATC 2 cut(s) 1123, 1397
AcoI YGGCCR 2 cut(s) 22, 319
AcsI RAATTY 4 cut(s) 398, 527, 589, 909
AcuI CTGAAG 2 cut(s) 426, 569
AfaI GTAC 2 cut(s) 1038, 1422
AfiI CCNNNNNNNGG 3 cut(s) 85, 652, 1065
AflII CTTAAG 1 cut(s) 1081
AgeI ACCGGT 1 cut(s) 1148
AhlI ACTAGT 1 cut(s) 151
AjnI CCWGG 1 cut(s) 1032
AjuI GAANNNNNNNTTGG 2 cut(s) 488, 520
Alw21I GWGCWC 1 cut(s) 425
Alw26I GTCTC 1 cut(s) 827
AlwI GGATC 2 cut(s) 1123, 1397
AlwNI CAGNNNCTG 1 cut(s) 266
AoxI GGCC 2 cut(s) 22, 319
ApeKI GCWGC 1 cut(s) 557
ApoI RAATTY 4 cut(s) 398, 527, 589, 909
AsiGI ACCGGT 1 cut(s) 1148
AspA2I CCTAGG 1 cut(s) 233
AsuHPI GGTGA 5 cut(s) 157, 247, 361, 736, 1163
AvrII CCTAGG 1 cut(s) 233
BalI TGGCCA 2 cut(s) 24, 321
BbsI GAAGAC 2 cut(s) 301, 358
Bbv12I GWGCWC 1 cut(s) 425
BbvI GCAGC 1 cut(s) 569
BccI CCATC 4 cut(s) 347, 880, 1166, 1181
BciT130I CCWGG 1 cut(s) 1034
BciVI GTATCC 2 cut(s) 879, 962
BclI TGATCA 2 cut(s) 568, 1282
BcoDI GTCTC 1 cut(s) 827
BcuI ACTAGT 1 cut(s) 151
BfaI CTAG 5 cut(s) 65, 152, 234, 632, 987
BfmI CTRYAG 1 cut(s) 1248
BfrI CTTAAG 1 cut(s) 1081
BfuI GTATCC 2 cut(s) 879, 962
BisI GCNGC 1 cut(s) 558
BlnI CCTAGG 1 cut(s) 233
BlpI GCTNAGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 559
Bme1390I CCNGG 1 cut(s) 1034
BmrFI CCNGG 1 cut(s) 1034
BpiI GAAGAC 2 cut(s) 301, 358
BplI GAGNNNNNCTC 4 cut(s) 296, 328, 1296, 1328
Bpu1102I GCTNAGC 1 cut(s) 132
BpuEI CTTGAG 3 cut(s) 748, 828, 901
Bsa29I ATCGAT 2 cut(s) 112, 1261
BsaI GGTCTC 1 cut(s) 827
BsaJI CCNNGG 5 cut(s) 84, 233, 375, 646, 1059
BsaWI WCCGGW 2 cut(s) 818, 1148
Bsc4I CCNNNNNNNGG 3 cut(s) 85, 652, 1065
Bse118I RCCGGY 1 cut(s) 1148
Bse1I ACTGG 1 cut(s) 206
BseBI CCWGG 1 cut(s) 1034
BseCI ATCGAT 2 cut(s) 112, 1261
BseDI CCNNGG 5 cut(s) 84, 233, 375, 646, 1059
BseGI GGATG 2 cut(s) 339, 1029
BseLI CCNNNNNNNGG 3 cut(s) 85, 652, 1065
BseMII CTCAG 1 cut(s) 273
BseNI ACTGG 1 cut(s) 206
BseXI GCAGC 1 cut(s) 569
BsgI GTGCAG 1 cut(s) 977
BshFI GGCC 2 cut(s) 24, 321
BshTI ACCGGT 1 cut(s) 1148
BshVI ATCGAT 2 cut(s) 112, 1261
BsiHKAI GWGCWC 1 cut(s) 425
BsiSI CCGG 2 cut(s) 819, 1149
BslFI GGGAC 1 cut(s) 459
BslI CCNNNNNNNGG 3 cut(s) 85, 652, 1065
BsmAI GTCTC 1 cut(s) 827
BsmFI GGGAC 1 cut(s) 459
BsnI GGCC 2 cut(s) 24, 321
Bso31I GGTCTC 1 cut(s) 827
Bsp1286I GDGCHC 1 cut(s) 425
Bsp143I GATC 6 cut(s) 568, 1115, 1258, 1267, 1282, 1402
Bsp1720I GCTNAGC 1 cut(s) 132
Bsp19I CCATGG 3 cut(s) 84, 375, 1059
BspACI CCGC 3 cut(s) 477, 1185, 1245
BspANI GGCC 2 cut(s) 24, 321
BspCNI CTCAG 1 cut(s) 272
BspDI ATCGAT 2 cut(s) 112, 1261
BspHI TCATGA 3 cut(s) 408, 535, 1279
BspPI GGATC 2 cut(s) 1123, 1397
BspQI GCTCTTC 1 cut(s) 469
BspTI CTTAAG 1 cut(s) 1081
BspTNI GGTCTC 1 cut(s) 827
BsrFI RCCGGY 1 cut(s) 1148
BsrI ACTGG 1 cut(s) 206
BssAI RCCGGY 1 cut(s) 1148
BssECI CCNNGG 5 cut(s) 84, 233, 375, 646, 1059
BssMI GATC 6 cut(s) 568, 1115, 1258, 1267, 1282, 1402
BssT1I CCWWGG 5 cut(s) 84, 233, 375, 646, 1059
Bst2UI CCWGG 1 cut(s) 1034
Bst4CI ACNGT 5 cut(s) 277, 295, 751, 1018, 1132
Bst6I CTCTTC 2 cut(s) 469, 1297
BstAFI CTTAAG 1 cut(s) 1081
BstC8I GCNNGC 1 cut(s) 323
BstDEI CTNAG 5 cut(s) 74, 125, 132, 241, 259
BstDSI CCRYGG 3 cut(s) 84, 375, 1059
BstF5I GGATG 2 cut(s) 339, 1029
BstKTI GATC 6 cut(s) 571, 1118, 1261, 1270, 1285, 1405
BstMAI GTCTC 1 cut(s) 827
BstMBI GATC 6 cut(s) 568, 1115, 1258, 1267, 1282, 1402
BstMWI GCNNNNNNNGC 1 cut(s) 459
BstNI CCWGG 1 cut(s) 1034
BstNSI RCATGY 1 cut(s) 289
BstSCI CCNGG 1 cut(s) 1032
BstSFI CTRYAG 1 cut(s) 1248
BstV1I GCAGC 1 cut(s) 569
BstV2I GAAGAC 2 cut(s) 301, 358
BstX2I RGATCY 2 cut(s) 1115, 1402
BstYI RGATCY 2 cut(s) 1115, 1402
Bsu15I ATCGAT 2 cut(s) 112, 1261
BsuI GTATCC 2 cut(s) 879, 962
BsuRI GGCC 2 cut(s) 24, 321
BsuTUI ATCGAT 2 cut(s) 112, 1261
BtgI CCRYGG 3 cut(s) 84, 375, 1059
BtgZI GCGATG 1 cut(s) 468
BtsCI GGATG 2 cut(s) 339, 1029
Cac8I GCNNGC 1 cut(s) 323
CaiI CAGNNNCTG 1 cut(s) 266
CciI TCATGA 3 cut(s) 408, 535, 1279
Cfr10I RCCGGY 1 cut(s) 1148
ClaI ATCGAT 2 cut(s) 112, 1261
Csp6I GTAC 2 cut(s) 1037, 1421
CspAI ACCGGT 1 cut(s) 1148
CviAII CATG 9 cut(s) 85, 286, 376, 409, 536, 796, 1060, 1280, 1315
CviQI GTAC 2 cut(s) 1037, 1421
DdeI CTNAG 5 cut(s) 74, 125, 132, 241, 259
DpnI GATC 6 cut(s) 570, 1117, 1260, 1269, 1284, 1404
DpnII GATC 6 cut(s) 568, 1115, 1258, 1267, 1282, 1402
EaeI YGGCCR 2 cut(s) 22, 319
Eam1104I CTCTTC 2 cut(s) 469, 1297
EarI CTCTTC 2 cut(s) 469, 1297
Eco130I CCWWGG 5 cut(s) 84, 233, 375, 646, 1059
Eco31I GGTCTC 1 cut(s) 827
Eco57I CTGAAG 2 cut(s) 426, 569
EcoRI GAATTC 1 cut(s) 589
EcoRII CCWGG 1 cut(s) 1032
EcoT14I CCWWGG 5 cut(s) 84, 233, 375, 646, 1059
ErhI CCWWGG 5 cut(s) 84, 233, 375, 646, 1059
FaeI CATG 9 cut(s) 88, 289, 379, 412, 539, 799, 1063, 1283, 1318
FalI AAGNNNNNCTT 4 cut(s) 837, 869, 916, 948
FaqI GGGAC 1 cut(s) 459
FatI CATG 9 cut(s) 84, 285, 375, 408, 535, 795, 1059, 1279, 1314
FauI CCCGC 3 cut(s) 484, 1192, 1252
FbaI TGATCA 2 cut(s) 568, 1282
FblI GTMKAC 1 cut(s) 1164
Fnu4HI GCNGC 1 cut(s) 558
FokI GGATG 2 cut(s) 326, 1016
Fsp4HI GCNGC 1 cut(s) 558
FspBI CTAG 5 cut(s) 65, 152, 234, 632, 987
GluI GCNGC 1 cut(s) 558
HaeIII GGCC 2 cut(s) 24, 321
HapII CCGG 2 cut(s) 819, 1149
Hin1II CATG 9 cut(s) 88, 289, 379, 412, 539, 799, 1063, 1283, 1318
HincII GTYRAC 2 cut(s) 448, 1165
HindII GTYRAC 2 cut(s) 448, 1165
HindIII AAGCTT 2 cut(s) 1078, 1390
HinfI GANTC 2 cut(s) 221, 929
HpaI GTTAAC 1 cut(s) 448
HpaII CCGG 2 cut(s) 819, 1149
HphI GGTGA 5 cut(s) 157, 247, 361, 736, 1163
Hpy166II GTNNAC 5 cut(s) 291, 448, 744, 1088, 1165
Hpy188I TCNGA 3 cut(s) 588, 1075, 1287
Hpy188III TCNNGA 6 cut(s) 394, 409, 536, 1140, 1207, 1280
Hpy8I GTNNAC 5 cut(s) 291, 448, 744, 1088, 1165
Hpy99I CGWCG 1 cut(s) 1166
HpyAV CCTTC 3 cut(s) 131, 836, 860
HpyCH4III ACNGT 5 cut(s) 277, 295, 751, 1018, 1132
HpyCH4IV ACGT 2 cut(s) 612, 699
HpyCH4V TGCA 7 cut(s) 34, 45, 557, 692, 936, 994, 1374
HpyF10VI GCNNNNNNNGC 1 cut(s) 459
HpyF3I CTNAG 5 cut(s) 74, 125, 132, 241, 259
HpySE526I ACGT 2 cut(s) 612, 699
Hsp92II CATG 9 cut(s) 88, 289, 379, 412, 539, 799, 1063, 1283, 1318
Ksp22I TGATCA 2 cut(s) 568, 1282
KspAI GTTAAC 1 cut(s) 448
Kzo9I GATC 6 cut(s) 568, 1115, 1258, 1267, 1282, 1402
LguI GCTCTTC 1 cut(s) 469
Lsp1109I GCAGC 1 cut(s) 569
MaeI CTAG 5 cut(s) 65, 152, 234, 632, 987
MaeII ACGT 2 cut(s) 612, 699
MaeIII GTNAC 3 cut(s) 163, 608, 1012
MalI GATC 6 cut(s) 570, 1117, 1260, 1269, 1284, 1404
MboI GATC 6 cut(s) 568, 1115, 1258, 1267, 1282, 1402
MflI RGATCY 2 cut(s) 1115, 1402
MhlI GDGCHC 1 cut(s) 425
MlsI TGGCCA 2 cut(s) 24, 321
MluNI TGGCCA 2 cut(s) 24, 321
MlyI GAGTC 1 cut(s) 215
MmeI TCCRAC 2 cut(s) 361, 946
Mox20I TGGCCA 2 cut(s) 24, 321
MscI TGGCCA 2 cut(s) 24, 321
MseI TTAA 5 cut(s) 332, 447, 597, 1082, 1092
MslI CAYNNNNRTG 6 cut(s) 332, 344, 374, 413, 1149, 1208
Msp20I TGGCCA 2 cut(s) 24, 321
MspCI CTTAAG 1 cut(s) 1081
MspI CCGG 2 cut(s) 819, 1149
MspR9I CCNGG 1 cut(s) 1034
MvaI CCWGG 1 cut(s) 1034
MwoI GCNNNNNNNGC 1 cut(s) 459
NcoI CCATGG 3 cut(s) 84, 375, 1059
NdeII GATC 6 cut(s) 568, 1115, 1258, 1267, 1282, 1402
NlaIII CATG 9 cut(s) 88, 289, 379, 412, 539, 799, 1063, 1283, 1318
NmuCI GTSAC 1 cut(s) 163
NspI RCATGY 1 cut(s) 289
PagI TCATGA 3 cut(s) 408, 535, 1279
PciSI GCTCTTC 1 cut(s) 469
PfeI GAWTC 1 cut(s) 929
PflMI CCANNNNNTGG 2 cut(s) 85, 1065
PinAI ACCGGT 1 cut(s) 1148
PkrI GCNGC 1 cut(s) 559
PleI GAGTC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 215
Psp6I CCWGG 1 cut(s) 1032
PspGI CCWGG 1 cut(s) 1032
PstNI CAGNNNCTG 1 cut(s) 266
PsuI RGATCY 2 cut(s) 1115, 1402
RsaI GTAC 2 cut(s) 1038, 1422
RsaNI GTAC 2 cut(s) 1037, 1421
RseI CAYNNNNRTG 6 cut(s) 332, 344, 374, 413, 1149, 1208
SalI GTCGAC 1 cut(s) 1163
SapI GCTCTTC 1 cut(s) 469
SaqAI TTAA 5 cut(s) 332, 447, 597, 1082, 1092
SatI GCNGC 1 cut(s) 558
Sau3AI GATC 6 cut(s) 568, 1115, 1258, 1267, 1282, 1402
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 1 cut(s) 1034
SduI GDGCHC 1 cut(s) 425
SfcI CTRYAG 1 cut(s) 1248
SmiMI CAYNNNNRTG 6 cut(s) 332, 344, 374, 413, 1149, 1208
SmlI CTYRAG 4 cut(s) 763, 843, 880, 1081
SmoI CTYRAG 4 cut(s) 763, 843, 880, 1081
SpeI ACTAGT 1 cut(s) 151
SsiI CCGC 3 cut(s) 477, 1185, 1245
SspI AATATT 1 cut(s) 499
SspMI CTAG 5 cut(s) 65, 152, 234, 632, 987
StyD4I CCNGG 1 cut(s) 1032
StyI CCWWGG 5 cut(s) 84, 233, 375, 646, 1059
TaaI ACNGT 5 cut(s) 277, 295, 751, 1018, 1132
TaiI ACGT 2 cut(s) 615, 702
TaqI TCGA 4 cut(s) 112, 281, 1164, 1261
TatI WGTACW 1 cut(s) 1420
TfiI GAWTC 1 cut(s) 929
Tru1I TTAA 5 cut(s) 332, 447, 597, 1082, 1092
Tru9I TTAA 5 cut(s) 332, 447, 597, 1082, 1092
TseFI GTSAC 1 cut(s) 163
TseI GCWGC 1 cut(s) 557
Tsp45I GTSAC 1 cut(s) 163
TspGWI ACGGA 1 cut(s) 1394
Van91I CCANNNNNTGG 2 cut(s) 85, 1065
Vha464I CTTAAG 1 cut(s) 1081
XapI RAATTY 4 cut(s) 398, 527, 589, 909
XceI RCATGY 1 cut(s) 289
XcmI CCANNNNNNNNNTGG 3 cut(s) 298, 601, 1109
XmaJI CCTAGG 1 cut(s) 233
XmiI GTMKAC 1 cut(s) 1164
XspI CTAG 5 cut(s) 65, 152, 234, 632, 987
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.