Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002378.1

Orthogroup ID

OG0002671

Physical Location & Seq

Genomic Coordinates Forward (+)

52342 .. 53436

Gene Structure 1095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002378.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

atggtctctgtcctgggttatttggctttgagggtcacaaaaccaagaactagaacttcctttaggcccaaggattttgatttgttcttcacatctgtgtcttccacaacagtagcaagcatgtcaactgtagaaatggaggtcttttcaaacatccaactcatcattatgaccattttgatgctagcgggtggagaggttttcacttccttgcttggacttcaaattgcaaggtccaagattgccaaatttcatgataacaaagttgatgtagaactcagctcttctaataaggcctcctttgatcgaatagaatttcatgataacaaagttgatgtagaactcaactcttctaataaggcctccttcgatcgaatagagttaggtttggttaccctttcacagttagagagtcagcagaaacctaacattcaaaatggtttaaaaacctttgacaatgatatcaagtacaagtctattaggtgtctggcctatgtggttttaggttatcttttagtggttcatataggtggttccagtttagtttcattgtacattatccttgttccaagtgcaagacaagtactcaaaaacaaaggcattgaaatccaaacctttgctgttttcaccacggtttccacctttgcaaactgtggttttgtccccacaaacgagaatatgatcattttcaagaacaattctgggcttttacttcttctaattccccaaatccttgttggaaacaccttatatcccgtgatccttcgatttgtgatttggggtttggcaaaaatcacaaggagggtggagttcagttacatattgaagaatcataatgaattgggttacagtcatatgctatctggtcttcattctcttcttctacttgccactgtcttggggttcatagcagttcagctgatactattttgtgccatggagtggaaatctgaagccatggatggtctgagtggctatcagaaatttgtggcgtcattgtttcaaacggtgaattccaggcatgctggtgaatcggttgttgatctctccatcatctctcctgcaatcttggtgctatttgtcttgatgatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006950 GO:0006970 GO:0008150 GO:0008324 GO:0009628 GO:0009651 GO:0015075 GO:0015077 GO:0015081 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0035725 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TrkH

Protein Analysis

364

Amino Acids

40.48

Weight (kDa)

8.99

Isoelectric Point (pI)

37.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10310
fragaria_vesca	FvH4_4g06400 FvH4_4g06412 FvH4_4g06420 FvH4_4g06420 FvH4_4g06420 FvH4_4g06420
malus_domestica	MD16G1240400.v1.1
prunus_persica	Prupe.1G066800_v2.0.a1 Prupe.1G067100_v2.0.a1
pyrus_communis	pycom16g20110
rosa_chinensis	RchiOBHm_Chr4g0398141 RchiOBHm_Chr4g0398151
rosa_laevigata	RLG00000009382 RLG00000009383 RLG00000035139
rosa_multiflora	Rmu_sc0002035.1_g000011 Rmu_sc0002378.1_g000014 Rmu_sc0002378.1_g000025 Rmu_sc0008195.1_g000011 Rmu_sc0023295.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023290 Rroxscaffold_5G00343040 Rroxscaffold_5G00343070
rosa_rugosa	Rorug04G0006300 Rorug04G0006600 Rorug05G0304200
rosa_samantha	Rh4AG083400 Rh4AG083500 Rh4BG081100 Rh4BG081300 Rh4CG090400 Rh4CG090600 Rh4DG076000 Rh4DG076300 Rh5BG384700 Rh5DG398100
rosa_wichuraiana	Rw4G006930 Rw4G006940 Rw5G035170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	942
AciI	CCGC	1 cut(s)	188
AclWI	GGATC	1 cut(s)	754
AcsI	RAATTY	4 cut(s)	248, 314, 983, 1012
AcuI	CTGAAG	1 cut(s)	972
AcyI	GRCGYC	1 cut(s)	992
AfaI	GTAC	3 cut(s)	470, 554, 585
AfiI	CCNNNNNNNGG	1 cut(s)	942
AgsI	TTSAA	7 cut(s)	150, 224, 434, 605, 691, 826, 1004
AjnI	CCWGG	2 cut(s)	12, 1016
AleI	CACNNNNGTG	1 cut(s)	95
AluBI	AGCT	2 cut(s)	282, 919
AluI	AGCT	2 cut(s)	282, 919
Alw26I	GTCTC	1 cut(s)	10
AlwI	GGATC	1 cut(s)	754
AoxI	GGCC	4 cut(s)	65, 294, 360, 489
ApoI	RAATTY	4 cut(s)	248, 314, 983, 1012
AspS9I	GGNCC	2 cut(s)	66, 234
AsuHPI	GGTGA	3 cut(s)	619, 1021, 1040
AsuNHI	GCTAGC	1 cut(s)	184
AvaII	GGWCC	1 cut(s)	234
BbsI	GAAGAC	2 cut(s)	93, 860
BccI	CCATC	2 cut(s)	956, 1058
BciT130I	CCWGG	2 cut(s)	14, 1018
BclI	TGATCA	1 cut(s)	681
BcoDI	GTCTC	1 cut(s)	10
BfaI	CTAG	2 cut(s)	51, 185
BfmI	CTRYAG	1 cut(s)	129
BmcAI	AGTACT	1 cut(s)	585
Bme1390I	CCNGG	2 cut(s)	14, 1018
Bme18I	GGWCC	1 cut(s)	234
BmgT120I	GGNCC	2 cut(s)	66, 234
BmiI	GGNNCC	1 cut(s)	535
BmrFI	CCNGG	2 cut(s)	14, 1018
BmsI	GCATC	1 cut(s)	171
BmtI	GCTAGC	1 cut(s)	188
BpiI	GAAGAC	2 cut(s)	93, 860
BsaHI	GRCGYC	1 cut(s)	992
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	5 cut(s)	13, 69, 630, 936, 957
Bsc4I	CCNNNNNNNGG	1 cut(s)	942
Bse1I	ACTGG	1 cut(s)	537
BseBI	CCWGG	2 cut(s)	14, 1018
BseDI	CCNNGG	5 cut(s)	13, 69, 630, 936, 957
BseGI	GGATG	2 cut(s)	153, 967
BseLI	CCNNNNNNNGG	1 cut(s)	942
BseMII	CTCAG	2 cut(s)	292, 959
BseNI	ACTGG	1 cut(s)	537
Bsh1285I	CGRYCG	1 cut(s)	373
BshFI	GGCC	4 cut(s)	67, 296, 362, 491
BsiEI	CGRYCG	1 cut(s)	373
BslFI	GGGAC	1 cut(s)	647
BslI	CCNNNNNNNGG	1 cut(s)	942
BsmAI	GTCTC	1 cut(s)	10
BsmFI	GGGAC	1 cut(s)	647
BsnI	GGCC	4 cut(s)	67, 296, 362, 491
Bso31I	GGTCTC	1 cut(s)	10
Bsp1407I	TGTACA	1 cut(s)	552
Bsp143I	GATC	5 cut(s)	304, 370, 681, 759, 1042
Bsp19I	CCATGG	2 cut(s)	936, 957
BspACI	CCGC	1 cut(s)	188
BspANI	GGCC	4 cut(s)	67, 296, 362, 491
BspCNI	CTCAG	2 cut(s)	291, 960
BspHI	TCATGA	2 cut(s)	253, 319
BspLI	GGNNCC	1 cut(s)	535
BspOI	GCTAGC	1 cut(s)	188
BspPI	GGATC	1 cut(s)	754
BspQI	GCTCTTC	1 cut(s)	289
BspTNI	GGTCTC	1 cut(s)	10
BsrGI	TGTACA	1 cut(s)	552
BsrI	ACTGG	1 cut(s)	537
BssECI	CCNNGG	5 cut(s)	13, 69, 630, 936, 957
BssMI	GATC	5 cut(s)	304, 370, 681, 759, 1042
BssNI	GRCGYC	1 cut(s)	992
BssT1I	CCWWGG	3 cut(s)	69, 936, 957
Bst2UI	CCWGG	2 cut(s)	14, 1018
Bst4CI	ACNGT	8 cut(s)	112, 130, 405, 634, 653, 851, 895, 1009
Bst6I	CTCTTC	3 cut(s)	289, 355, 882
BstACI	GRCGYC	1 cut(s)	992
BstAUI	TGTACA	1 cut(s)	552
BstC8I	GCNNGC	3 cut(s)	118, 186, 1023
BstDEI	CTNAG	2 cut(s)	278, 968
BstDSI	CCRYGG	3 cut(s)	630, 936, 957
BstEII	GGTNACC	1 cut(s)	391
BstF5I	GGATG	2 cut(s)	153, 967
BstKTI	GATC	5 cut(s)	307, 373, 684, 762, 1045
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	5 cut(s)	304, 370, 681, 759, 1042
BstMCI	CGRYCG	1 cut(s)	373
BstNI	CCWGG	2 cut(s)	14, 1018
BstNSI	RCATGY	2 cut(s)	124, 1025
BstPI	GGTNACC	1 cut(s)	391
BstSCI	CCNGG	2 cut(s)	12, 1016
BstSFI	CTRYAG	1 cut(s)	129
BstV2I	GAAGAC	2 cut(s)	93, 860
BstXI	CCANNNNNNTGG	1 cut(s)	898
BsuRI	GGCC	4 cut(s)	67, 296, 362, 491
BtgI	CCRYGG	3 cut(s)	630, 936, 957
BtsCI	GGATG	2 cut(s)	153, 967
BtsIMutI	CAGTG	1 cut(s)	891
Cac8I	GCNNGC	3 cut(s)	118, 186, 1023
CciI	TCATGA	2 cut(s)	253, 319
Cfr13I	GGNCC	2 cut(s)	66, 234
CseI	GACGC	1 cut(s)	981
Csp6I	GTAC	3 cut(s)	469, 553, 584
CspCI	CAANNNNNGTGG	2 cut(s)	786, 821
CviAII	CATG	6 cut(s)	121, 254, 320, 937, 958, 1022
CviQI	GTAC	3 cut(s)	469, 553, 584
DdeI	CTNAG	2 cut(s)	278, 968
DpnI	GATC	5 cut(s)	306, 372, 683, 761, 1044
DpnII	GATC	5 cut(s)	304, 370, 681, 759, 1042
DraI	TTTAAA	1 cut(s)	444
Eam1104I	CTCTTC	3 cut(s)	289, 355, 882
EarI	CTCTTC	3 cut(s)	289, 355, 882
Eco130I	CCWWGG	3 cut(s)	69, 936, 957
Eco147I	AGGCCT	2 cut(s)	296, 362
Eco31I	GGTCTC	1 cut(s)	10
Eco32I	GATATC	1 cut(s)	463
Eco47I	GGWCC	1 cut(s)	234
Eco57I	CTGAAG	1 cut(s)	972
Eco91I	GGTNACC	1 cut(s)	391
EcoO65I	GGTNACC	1 cut(s)	391
EcoRI	GAATTC	1 cut(s)	1012
EcoRII	CCWGG	2 cut(s)	12, 1016
EcoRV	GATATC	1 cut(s)	463
EcoT14I	CCWWGG	3 cut(s)	69, 936, 957
ErhI	CCWWGG	3 cut(s)	69, 936, 957
FaeI	CATG	6 cut(s)	124, 257, 323, 940, 961, 1025
FalI	AAGNNNNNCTT	4 cut(s)	284, 316, 350, 382
FaqI	GGGAC	1 cut(s)	647
FatI	CATG	6 cut(s)	120, 253, 319, 936, 957, 1021
FauI	CCCGC	1 cut(s)	181
FauNDI	CATATG	1 cut(s)	855
FbaI	TGATCA	1 cut(s)	681
FokI	GGATG	2 cut(s)	140, 974
FspBI	CTAG	2 cut(s)	51, 185
HaeIII	GGCC	4 cut(s)	67, 296, 362, 491
HgaI	GACGC	1 cut(s)	981
Hin1I	GRCGYC	1 cut(s)	992
Hin1II	CATG	6 cut(s)	124, 257, 323, 940, 961, 1025
HincII	GTYRAC	1 cut(s)	126
HindII	GTYRAC	1 cut(s)	126
HinfI	GANTC	3 cut(s)	412, 829, 1031
HphI	GGTGA	3 cut(s)	619, 1021, 1040
Hpy166II	GTNNAC	1 cut(s)	126
Hpy188I	TCNGA	3 cut(s)	952, 969, 981
Hpy188III	TCNNGA	4 cut(s)	254, 320, 691, 1084
Hpy8I	GTNNAC	1 cut(s)	126
HpyAV	CCTTC	2 cut(s)	376, 773
HpyCH4III	ACNGT	8 cut(s)	112, 130, 405, 634, 653, 851, 895, 1009
HpyCH4V	TGCA	4 cut(s)	230, 575, 647, 1064
HpyF3I	CTNAG	2 cut(s)	278, 968
Hsp92I	GRCGYC	1 cut(s)	992
Hsp92II	CATG	6 cut(s)	124, 257, 323, 940, 961, 1025
Ksp22I	TGATCA	1 cut(s)	681
Kzo9I	GATC	5 cut(s)	304, 370, 681, 759, 1042
LguI	GCTCTTC	1 cut(s)	289
LpnPI	CCDG	9 cut(s)	26, 473, 550, 687, 849, 1003, 1011, 1030, 1074
LweI	GCATC	1 cut(s)	171
MaeI	CTAG	2 cut(s)	51, 185
MaeIII	GTNAC	4 cut(s)	34, 391, 815, 845
MalI	GATC	5 cut(s)	306, 372, 683, 761, 1044
MboI	GATC	5 cut(s)	304, 370, 681, 759, 1042
MboII	GAAGA	9 cut(s)	79, 93, 276, 342, 707, 838, 860, 869, 872
MluCI	AATT	8 cut(s)	225, 248, 314, 697, 720, 839, 983, 1012
MlyI	GAGTC	1 cut(s)	421
MmeI	TCCRAC	2 cut(s)	181, 718
MnlI	CCTC	6 cut(s)	24, 133, 190, 307, 373, 795
MseI	TTAA	1 cut(s)	443
MslI	CAYNNNNRTG	5 cut(s)	95, 167, 179, 528, 1026
MspA1I	CMGCKG	1 cut(s)	919
MspR9I	CCNGG	2 cut(s)	14, 1018
MvaI	CCWGG	2 cut(s)	14, 1018
NcoI	CCATGG	2 cut(s)	936, 957
NdeI	CATATG	1 cut(s)	855
NdeII	GATC	5 cut(s)	304, 370, 681, 759, 1042
NheI	GCTAGC	1 cut(s)	184
NlaIII	CATG	6 cut(s)	124, 257, 323, 940, 961, 1025
NlaIV	GGNNCC	1 cut(s)	535
NmuCI	GTSAC	1 cut(s)	34
NspI	RCATGY	2 cut(s)	124, 1025
OliI	CACNNNNGTG	1 cut(s)	95
PaeI	GCATGC	1 cut(s)	1025
PagI	TCATGA	2 cut(s)	253, 319
PceI	AGGCCT	2 cut(s)	296, 362
PciSI	GCTCTTC	1 cut(s)	289
PfeI	GAWTC	2 cut(s)	829, 1031
PflMI	CCANNNNNTGG	1 cut(s)	942
Ple19I	CGATCG	1 cut(s)	373
PleI	GAGTC	1 cut(s)	420
PpsI	GAGTC	1 cut(s)	420
Psp6I	CCWGG	2 cut(s)	12, 1016
PspEI	GGTNACC	1 cut(s)	391
PspGI	CCWGG	2 cut(s)	12, 1016
PspN4I	GGNNCC	1 cut(s)	535
PspPI	GGNCC	2 cut(s)	66, 234
PvuI	CGATCG	1 cut(s)	373
PvuII	CAGCTG	1 cut(s)	919
RsaI	GTAC	3 cut(s)	470, 554, 585
RsaNI	GTAC	3 cut(s)	469, 553, 584
RseI	CAYNNNNRTG	5 cut(s)	95, 167, 179, 528, 1026
SapI	GCTCTTC	1 cut(s)	289
SaqAI	TTAA	1 cut(s)	443
Sau3AI	GATC	5 cut(s)	304, 370, 681, 759, 1042
Sau96I	GGNCC	2 cut(s)	66, 234
ScaI	AGTACT	1 cut(s)	585
SchI	GAGTC	1 cut(s)	421
ScrFI	CCNGG	2 cut(s)	14, 1018
SfaNI	GCATC	1 cut(s)	171
SfcI	CTRYAG	1 cut(s)	129
SinI	GGWCC	1 cut(s)	234
SmiMI	CAYNNNNRTG	5 cut(s)	95, 167, 179, 528, 1026
SphI	GCATGC	1 cut(s)	1025
Sse9I	AATT	8 cut(s)	225, 248, 314, 697, 720, 839, 983, 1012
SseBI	AGGCCT	2 cut(s)	296, 362
SsiI	CCGC	1 cut(s)	188
SspMI	CTAG	2 cut(s)	51, 185
StuI	AGGCCT	2 cut(s)	296, 362
StyD4I	CCNGG	2 cut(s)	12, 1016
StyI	CCWWGG	3 cut(s)	69, 936, 957
TaaI	ACNGT	8 cut(s)	112, 130, 405, 634, 653, 851, 895, 1009
TaqI	TCGA	4 cut(s)	307, 369, 373, 766
TasI	AATT	8 cut(s)	225, 248, 314, 697, 720, 839, 983, 1012
TatI	WGTACW	3 cut(s)	468, 552, 583
TfiI	GAWTC	2 cut(s)	829, 1031
Tru1I	TTAA	1 cut(s)	443
Tru9I	TTAA	1 cut(s)	443
TscAI	CASTG	1 cut(s)	898
TseFI	GTSAC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	7 cut(s)	242, 308, 512, 537, 852, 860, 895
TspRI	CASTG	1 cut(s)	898
Van91I	CCANNNNNTGG	1 cut(s)	942
VpaK11BI	GGWCC	1 cut(s)	234
XapI	RAATTY	4 cut(s)	248, 314, 983, 1012
XceI	RCATGY	2 cut(s)	124, 1025
XcmI	CCANNNNNNNNNTGG	1 cut(s)	734
XspI	CTAG	2 cut(s)	51, 185
ZrmI	AGTACT	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.