Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002671

Physical Location & Seq

Genomic Coordinates Reverse (-)

17723481 .. 17728499

Gene Structure 5019 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g20110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1605 bp

ATGAACAACTTTGCAGTTTTTGGTAAAAAGCTAGAGAGCTTTTATAGCAATTCATGCATAGCTTTAAGGCGTTCACTATTCCGTGTCCTGCTCTTTCATTCAAACCCTTTCTGTTTCCAGCTTTTTTATTTCCTAACGGTCTCTCTTTTTGGTTATTTGGCTTTGAGGGTCACAAAACCAAGAACAAGCACCAACACTTCTTTCAGGCCCAATGATTATGATATCTTCTTCACATCTGTGTCTGCCACAACAGTCTCAAGCATGTCAACAGTTGAAATGGAGGTCTTTTCAAATACCCAACTAATTATTTTGACCATTTTGATGTTATTGGGTGGGGAGGTTTTCACTTCCATGCTTGGACTTCAAATCGCAAAGTCCAAAAATTTTCCCAAATCTCTTAATCACAAAGACGACAACAGAGTTGATGTTGTTGTTGATAATAGCAGACACCATCCCCCAGACTCTAATAACAATACGTCTTTTGAGCAATTTGAGTTGAGGTTTGTCAATGATCGTTCACATTTAGAAAATGATGAGAAAAATAATATCTACAAGTCCATTAGGATTTTGGGTTATGTAGTTTTGGGATATCTTTTAGTGGTTCATATAGGTGGTTCTATTTTAGTTTCCATGTACATAGCCCTTGTACCAAGTGCAAGACAAATACTTCAAAGCAAAGGCATCGAAATCCAAACATTTTCTATTTTCACCACTGTTTCTACCTTTGCAAATTGTGGTTATGTTCCCACAAATGAAAACATGATCGTTTTCAAGAAAAACTCAGGTCTTCTACTGCTTCTTCTCCCTCAACTCCTTATAGGGAACACATTGTATCCGTCGTGCCTTCGGTTTCTGATCTGGCTTTTGCAGAAAATCACGAAGAGAGCAGAATTCAGTTACATACTGAAGAATTATAAAGAATTGGGCTACTGTCATTTGCGGTCTAGTCTTCACTCTTTTCTTCTGGCCCTTACTGTCTTGGGATTCATAGTAGCTCAGTTTATACTATTTTGTGTCATGGAATGGAAATCAGAAGCCATGGATGGTCTAAGTGCGTATGAGAAATTTGTCGCCTCAATCTTTCAAGTGACGAATTCAAGACATAGCGGTGAATCCGTTGTTGATCTCTCTGTTCTCTCTCCTGCAATCTTAGTGCTCTTTGTGGTGATGATGTATCTCCCACCATATACCACATTTCTTCCAACAACTAGCGACTGTGAAGAGATTGCTTTAGCAAATGGAAGTCGAAATCGAAATCCAATAAAGACTTTGGTGGATTCTCTAATATTCTCACAACTGTCTTATATAGCAATGTTCGTCATTCTCGTTTGTATCACAGAGAGAGATAAGATGAAGGACGACCCCCTCAACTTTAATGTGCTCAACATCACCATAGAAGTAATTAGTGGATACGGAAATGTTGGATTCTCCACCGGCTACAGTTGTAAACGTCTATTGAAACATGATAGTGCTTGCGTAGATGCTTGGTACGGGTTTGCCGGAAGATGGAGTACCCAAGGAAAGTTCGTCCTCATTCTTGTCATGATATTTGGGAGGCTCAAGCAATTCAGTATGAAGCAGGGTAAAGCTTGGAAGCTATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006950 GO:0006970 GO:0008150 GO:0008324 GO:0009628 GO:0009651 GO:0015075 GO:0015077 GO:0015081 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0035725 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TrkH

Protein Analysis

535

Amino Acids

60.51

Weight (kDa)

9.1

Isoelectric Point (pI)

40.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TrkH	PF02386	178 - 393	1.8e-24	Cation transport protein
TrkH	PF02386	423 - 524	5.5e-08	Cation transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10310
fragaria_vesca	FvH4_4g06400 FvH4_4g06412 FvH4_4g06420 FvH4_4g06420 FvH4_4g06420 FvH4_4g06420
malus_domestica	MD16G1240400.v1.1
prunus_persica	Prupe.1G066800_v2.0.a1 Prupe.1G067100_v2.0.a1
pyrus_communis	pycom16g20110
rosa_chinensis	RchiOBHm_Chr4g0398141 RchiOBHm_Chr4g0398151
rosa_laevigata	RLG00000009382 RLG00000009383 RLG00000035139
rosa_multiflora	Rmu_sc0002035.1_g000011 Rmu_sc0002378.1_g000014 Rmu_sc0002378.1_g000025 Rmu_sc0008195.1_g000011 Rmu_sc0023295.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023290 Rroxscaffold_5G00343040 Rroxscaffold_5G00343070
rosa_rugosa	Rorug04G0006300 Rorug04G0006600 Rorug05G0304200
rosa_samantha	Rh4AG083400 Rh4AG083500 Rh4BG081100 Rh4BG081300 Rh4CG090400 Rh4CG090600 Rh4DG076000 Rh4DG076300 Rh5BG384700 Rh5DG398100
rosa_wichuraiana	Rw4G006930 Rw4G006940 Rw5G035170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	915
AciI	CCGC	2 cut(s)	940, 1107
AcsI	RAATTY	4 cut(s)	382, 890, 1064, 1093
AcuI	CTGAAG	1 cut(s)	926
AfaI	GTAC	4 cut(s)	635, 648, 1490, 1513
AfiI	CCNNNNNNNGG	1 cut(s)	1506
AgsI	TTSAA	9 cut(s)	102, 275, 291, 365, 671, 772, 1085, 1098, 1459
AjuI	GAANNNNNNNTTGG	2 cut(s)	185, 217
AleI	CACNNNNGTG	1 cut(s)	236
AluBI	AGCT	7 cut(s)	31, 39, 62, 121, 995, 1589, 1597
AluI	AGCT	7 cut(s)	31, 39, 62, 121, 995, 1589, 1597
Alw21I	GWGCWC	2 cut(s)	1158, 1383
Alw26I	GTCTC	2 cut(s)	145, 259
AoxI	GGCC	2 cut(s)	206, 966
ApoI	RAATTY	4 cut(s)	382, 890, 1064, 1093
AspS9I	GGNCC	2 cut(s)	207, 967
AsuHPI	GGTGA	4 cut(s)	700, 1121, 1177, 1381
BarI	GAAGNNNNNNTAC	2 cut(s)	1495, 1527
BbsI	GAAGAC	2 cut(s)	779, 941
Bbv12I	GWGCWC	2 cut(s)	1158, 1383
BccI	CCATC	3 cut(s)	459, 1037, 1500
BcgI	CGANNNNNNTGC	2 cut(s)	664, 698
BciVI	GTATCC	2 cut(s)	843, 1403
BcoDI	GTCTC	2 cut(s)	145, 259
BfaI	CTAG	3 cut(s)	32, 945, 1209
BfmI	CTRYAG	1 cut(s)	1438
BfuI	GTATCC	2 cut(s)	843, 1403
BmgT120I	GGNCC	2 cut(s)	207, 967
BmsI	GCATC	2 cut(s)	690, 1471
BpiI	GAAGAC	2 cut(s)	779, 941
BpuEI	CTTGAG	2 cut(s)	241, 1544
BsaI	GGTCTC	1 cut(s)	145
BsaJI	CCNNGG	2 cut(s)	1038, 1516
Bsc4I	CCNNNNNNNGG	1 cut(s)	1506
Bse118I	RCCGGY	1 cut(s)	1433
Bse3DI	GCAATG	1 cut(s)	1317
BseDI	CCNNGG	2 cut(s)	1038, 1516
BseGI	GGATG	2 cut(s)	451, 1048
BseLI	CCNNNNNNNGG	1 cut(s)	1506
BseMI	GCAATG	1 cut(s)	1317
BseMII	CTCAG	2 cut(s)	795, 1010
BshFI	GGCC	2 cut(s)	208, 968
BsiHKAI	GWGCWC	2 cut(s)	1158, 1383
BsiSI	CCGG	2 cut(s)	1434, 1500
BslI	CCNNNNNNNGG	1 cut(s)	1506
BsmAI	GTCTC	2 cut(s)	145, 259
BsnI	GGCC	2 cut(s)	208, 968
Bso31I	GGTCTC	1 cut(s)	145
Bsp1286I	GDGCHC	2 cut(s)	1158, 1383
Bsp1407I	TGTACA	1 cut(s)	633
Bsp143I	GATC	4 cut(s)	511, 762, 855, 1123
Bsp19I	CCATGG	1 cut(s)	1038
BspACI	CCGC	2 cut(s)	940, 1107
BspANI	GGCC	2 cut(s)	208, 968
BspCNI	CTCAG	2 cut(s)	794, 1009
BspHI	TCATGA	2 cut(s)	1542, 1601
BspTNI	GGTCTC	1 cut(s)	145
BsrDI	GCAATG	1 cut(s)	1317
BsrFI	RCCGGY	1 cut(s)	1433
BsrGI	TGTACA	1 cut(s)	633
BssAI	RCCGGY	1 cut(s)	1433
BssECI	CCNNGG	2 cut(s)	1038, 1516
BssMI	GATC	4 cut(s)	511, 762, 855, 1123
BssT1I	CCWWGG	2 cut(s)	1038, 1516
Bst4CI	ACNGT	9 cut(s)	139, 253, 271, 715, 932, 976, 1217, 1299, 1442
Bst6I	CTCTTC	2 cut(s)	875, 1215
BstAPI	GCANNNNNTGC	1 cut(s)	54
BstAUI	TGTACA	1 cut(s)	633
BstC8I	GCNNGC	1 cut(s)	1474
BstDEI	CTNAG	4 cut(s)	781, 996, 1049, 1150
BstDSI	CCRYGG	1 cut(s)	1038
BstF5I	GGATG	2 cut(s)	451, 1048
BstKTI	GATC	4 cut(s)	514, 765, 858, 1126
BstMAI	GTCTC	2 cut(s)	145, 259
BstMBI	GATC	4 cut(s)	511, 762, 855, 1123
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 54
BstNSI	RCATGY	1 cut(s)	265
BstSFI	CTRYAG	1 cut(s)	1438
BstV2I	GAAGAC	2 cut(s)	779, 941
BsuI	GTATCC	2 cut(s)	843, 1403
BsuRI	GGCC	2 cut(s)	208, 968
BtgI	CCRYGG	1 cut(s)	1038
BtsCI	GGATG	2 cut(s)	451, 1048
BtsIMutI	CAGTG	1 cut(s)	711
Cac8I	GCNNGC	1 cut(s)	1474
CciI	TCATGA	2 cut(s)	1542, 1601
Cfr10I	RCCGGY	1 cut(s)	1433
Cfr13I	GGNCC	2 cut(s)	207, 967
Csp6I	GTAC	4 cut(s)	634, 647, 1489, 1512
CviQI	GTAC	4 cut(s)	634, 647, 1489, 1512
DdeI	CTNAG	4 cut(s)	781, 996, 1049, 1150
DpnI	GATC	4 cut(s)	513, 764, 857, 1125
DpnII	GATC	4 cut(s)	511, 762, 855, 1123
Eam1104I	CTCTTC	2 cut(s)	875, 1215
EarI	CTCTTC	2 cut(s)	875, 1215
Eco130I	CCWWGG	2 cut(s)	1038, 1516
Eco31I	GGTCTC	1 cut(s)	145
Eco32I	GATATC	2 cut(s)	223, 590
Eco57I	CTGAAG	1 cut(s)	926
EcoRI	GAATTC	2 cut(s)	890, 1093
EcoRV	GATATC	2 cut(s)	223, 590
EcoT14I	CCWWGG	2 cut(s)	1038, 1516
EcoT22I	ATGCAT	1 cut(s)	59
ErhI	CCWWGG	2 cut(s)	1038, 1516
FokI	GGATG	2 cut(s)	438, 1055
FspBI	CTAG	3 cut(s)	32, 945, 1209
HaeIII	GGCC	2 cut(s)	208, 968
HapII	CCGG	2 cut(s)	1434, 1500
HincII	GTYRAC	1 cut(s)	267
HindII	GTYRAC	1 cut(s)	267
HindIII	AAGCTT	1 cut(s)	1587
HinfI	GANTC	5 cut(s)	461, 984, 1112, 1277, 1425
HpaII	CCGG	2 cut(s)	1434, 1500
HphI	GGTGA	4 cut(s)	700, 1121, 1177, 1381
Hpy166II	GTNNAC	4 cut(s)	74, 267, 518, 1448
Hpy188I	TCNGA	2 cut(s)	855, 1033
Hpy188III	TCNNGA	5 cut(s)	772, 877, 1098, 1543, 1602
Hpy8I	GTNNAC	4 cut(s)	74, 267, 518, 1448
Hpy99I	CGWCG	1 cut(s)	841
HpyAV	CCTTC	2 cut(s)	854, 1348
HpyCH4III	ACNGT	9 cut(s)	139, 253, 271, 715, 932, 976, 1217, 1299, 1442
HpyCH4IV	ACGT	2 cut(s)	476, 1450
HpyCH4V	TGCA	6 cut(s)	14, 57, 656, 728, 868, 1145
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 54
HpyF3I	CTNAG	4 cut(s)	781, 996, 1049, 1150
HpySE526I	ACGT	2 cut(s)	476, 1450
Kzo9I	GATC	4 cut(s)	511, 762, 855, 1123
LweI	GCATC	2 cut(s)	690, 1471
MaeI	CTAG	3 cut(s)	32, 945, 1209
MaeII	ACGT	2 cut(s)	476, 1450
MaeIII	GTNAC	3 cut(s)	169, 896, 1087
MalI	GATC	4 cut(s)	513, 764, 857, 1125
MboI	GATC	4 cut(s)	511, 762, 855, 1123
MhlI	GDGCHC	2 cut(s)	1158, 1383
MlyI	GAGTC	1 cut(s)	455
MmeI	TCCRAC	2 cut(s)	1226, 1402
MnlI	CCTC	9 cut(s)	159, 274, 331, 492, 816, 1084, 1376, 1541, 1548
Mph1103I	ATGCAT	1 cut(s)	59
MseI	TTAA	3 cut(s)	65, 399, 1374
MslI	CAYNNNNRTG	6 cut(s)	236, 320, 350, 609, 1107, 1467
MspI	CCGG	2 cut(s)	1434, 1500
MwoI	GCNNNNNNNGC	2 cut(s)	45, 54
NcoI	CCATGG	1 cut(s)	1038
NdeII	GATC	4 cut(s)	511, 762, 855, 1123
NmuCI	GTSAC	2 cut(s)	169, 1087
NsiI	ATGCAT	1 cut(s)	59
NspI	RCATGY	1 cut(s)	265
OliI	CACNNNNGTG	1 cut(s)	236
PagI	TCATGA	2 cut(s)	1542, 1601
PcsI	WCGNNNNNNNCGW	1 cut(s)	1323
PfeI	GAWTC	4 cut(s)	984, 1112, 1277, 1425
PleI	GAGTC	1 cut(s)	455
PpsI	GAGTC	1 cut(s)	455
PsiI	TTATAA	1 cut(s)	915
PspPI	GGNCC	2 cut(s)	207, 967
RsaI	GTAC	4 cut(s)	635, 648, 1490, 1513
RsaNI	GTAC	4 cut(s)	634, 647, 1489, 1512
RseI	CAYNNNNRTG	6 cut(s)	236, 320, 350, 609, 1107, 1467
SaqAI	TTAA	3 cut(s)	65, 399, 1374
Sau3AI	GATC	4 cut(s)	511, 762, 855, 1123
Sau96I	GGNCC	2 cut(s)	207, 967
SchI	GAGTC	1 cut(s)	455
SduI	GDGCHC	2 cut(s)	1158, 1383
SfaNI	GCATC	2 cut(s)	690, 1471
SfcI	CTRYAG	1 cut(s)	1438
SmiMI	CAYNNNNRTG	6 cut(s)	236, 320, 350, 609, 1107, 1467
SmlI	CTYRAG	2 cut(s)	256, 1559
SmoI	CTYRAG	2 cut(s)	256, 1559
SsiI	CCGC	2 cut(s)	940, 1107
SspI	AATATT	1 cut(s)	1287
SspMI	CTAG	3 cut(s)	32, 945, 1209
StyI	CCWWGG	2 cut(s)	1038, 1516
TaaI	ACNGT	9 cut(s)	139, 253, 271, 715, 932, 976, 1217, 1299, 1442
TaiI	ACGT	2 cut(s)	479, 1453
TaqI	TCGA	3 cut(s)	684, 1246, 1252
TatI	WGTACW	1 cut(s)	633
TfiI	GAWTC	4 cut(s)	984, 1112, 1277, 1425
Tru1I	TTAA	3 cut(s)	65, 399, 1374
Tru9I	TTAA	3 cut(s)	65, 399, 1374
TscAI	CASTG	1 cut(s)	718
TseFI	GTSAC	2 cut(s)	169, 1087
Tsp45I	GTSAC	2 cut(s)	169, 1087
TspDTI	ATGAA	8 cut(s)	17, 42, 86, 593, 768, 976, 1367, 1589
TspGWI	ACGGA	4 cut(s)	71, 825, 1105, 1428
TspRI	CASTG	1 cut(s)	718
XapI	RAATTY	4 cut(s)	382, 890, 1064, 1093
XceI	RCATGY	1 cut(s)	265
XcmI	CCANNNNNNNNNTGG	1 cut(s)	565
XspI	CTAG	3 cut(s)	32, 945, 1209
Zsp2I	ATGCAT	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.