Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002671

Physical Location & Seq

Genomic Coordinates Reverse (-)

4779946 .. 4783246

Gene Structure 3301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G067100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1629 bp

ATGAAGAACTTTGCTGTTCTTGGTCATAAACTAGAGATGCTTTCTAGCTATTCATGCAACAAACTGCCTTGCTTCTCCCAATCTTTTAAAGCTCAAATTCGATCAATTTTTCGTGTCTTGCTCTTTCATGCCAACCCTTTCTATGTCCAGCTTGTTTATTTTGTGATGCTCTCTCTGTTGGGTTATTTGGCTTTGATATTCACAAAGCCAAGAACTACTAGGCCCAAGGACGCTGATGTGTTCTTCACATCTGTGTCTGCCACAACAGTCTCAAGCATGTCAGTAGTGGAAATGGAGGTCTTTTCAAACACCCATCTAATTATTTTGACCATTTTGATGTTATTGGGTGGGGAGGTTTTCACTTCCATGCTTGGACTTCTATTTACAAAGTCCAAAATTATTCCCAAGTTTCATGATCATCAAACAGACAGCAGAATTGATGTAGTCAATACCAAAAACCATTTCCCAGACTCTAATGCTGATCAAATTGAGTTGGGTTTGGCTACTCATTCACATTTAGAGAATGAGAAACCGCAAATTATTAATCACATAGATGGTATGAACAACATCAACAACAAGTATAATTCTATTAGGTTTTTGGGTTATGTAGTTTTGGGCTATCTTTTAGTGGTTCATATAGGTGGCTCTATTTTAGTTTCCTTGTACTTCACCCTTGTCCCAAGTGCAAGACATGTACTCGAAAAAAAAGGCATTGAAATCCCAACATTTGCTGTTTTCACCACAGTTTCCACCTTTTCAAATTGCGGTTTTGTCCCCACAAACGAAAATATGATAGTTTTCAAGAACAACTCAGGTCTTTTGCTTCTTCTCCTTCCTCAACTCCTTCTTGGCAACACTTTATATCCAGCATGCCTAAGATTTCTGATCTGGGTTTTGGAGAAAATTACCAAGAGGGTGGAATTTAGTTACATGTTGAAGAATTATAAAGACATGGGCTACAGCCATATGCTATCTAGTCTTCGTTCTTTTCTTCTGGCCATTACTGTCTTGGGCTTCATAGTAGTTCAGGTTACACTATTTTGTGCCATGGAGTGGAAATCTGAAGCCATGGATGGTCTGACTGCCTATCAGAAATTTGTGGCCTCAATCTTTCAGACCATGAATTCGAGACATGCCGGTGAATCCGTTATTGATCTCTCTGTTATCTCTCCTGCAATCTTAGTGCTCTTTGTGGTGATGATGTATCTTCCACCATATACTACATTTCTTCCAACAACTAGCGATTGCGAAGACTCTGCCTCAGCAAAGGGCATTCCAAACCCAAGAAAGACTTTGGTGGAGTCTCTAATATTTTCACAACTGTCTTATTTAGCAATGTTTATCATTCTCATTTGCATCACAGAGAGGGAAAAGATGAAGGAAGACCCCCTCAACTTTAGTGTTCTTAACGTCATTATAGAAGTAATTAGTGCATATGGGAATGTTGGGTTCTCAACTGGCTACAGCTGCAAGCGTCGACTGAAACATGAAGGTGATTGCAAAGACGCATGGGCTGGATTTTCCGGAAGGTGGAGTACCCAAGGAAAGTTTATACTCATTACTGTCATGTTCTTTGGGAGGCTAAAGAGTTTCAGTACTAAACATGGCAAAGCTTGGAAGCTATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006950 GO:0006970 GO:0008150 GO:0008324 GO:0009628 GO:0009651 GO:0015075 GO:0015077 GO:0015081 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0035725 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TrkH

Protein Analysis

543

Amino Acids

61.08

Weight (kDa)

9.12

Isoelectric Point (pI)

35.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10310
fragaria_vesca	FvH4_4g06400 FvH4_4g06412 FvH4_4g06420 FvH4_4g06420 FvH4_4g06420 FvH4_4g06420
malus_domestica	MD16G1240400.v1.1
prunus_persica	Prupe.1G066800_v2.0.a1 Prupe.1G067100_v2.0.a1
pyrus_communis	pycom16g20110
rosa_chinensis	RchiOBHm_Chr4g0398141 RchiOBHm_Chr4g0398151
rosa_laevigata	RLG00000009382 RLG00000009383 RLG00000035139
rosa_multiflora	Rmu_sc0002035.1_g000011 Rmu_sc0002378.1_g000014 Rmu_sc0002378.1_g000025 Rmu_sc0008195.1_g000011 Rmu_sc0023295.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023290 Rroxscaffold_5G00343040 Rroxscaffold_5G00343070
rosa_rugosa	Rorug04G0006300 Rorug04G0006600 Rorug05G0304200
rosa_samantha	Rh4AG083400 Rh4AG083500 Rh4BG081100 Rh4BG081300 Rh4CG090400 Rh4CG090600 Rh4DG076000 Rh4DG076300 Rh5BG384700 Rh5DG398100
rosa_wichuraiana	Rw4G006930 Rw4G006940 Rw5G035170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	945
AccB7I	CCANNNNNTGG	1 cut(s)	1053
AccI	GTMKAC	1 cut(s)	1477
AccIII	TCCGGA	1 cut(s)	1523
AciI	CCGC	2 cut(s)	533, 765
AcoI	YGGCCR	1 cut(s)	996
AcsI	RAATTY	4 cut(s)	96, 920, 1094, 1123
AcuI	CTGAAG	1 cut(s)	1083
AfaI	GTAC	4 cut(s)	665, 696, 1537, 1597
AfiI	CCNNNNNNNGG	2 cut(s)	1053, 1530
AflIII	ACRYGT	2 cut(s)	691, 930
AgsI	TTSAA	5 cut(s)	306, 716, 759, 802, 937
AjuI	GAANNNNNNNTTGG	2 cut(s)	446, 478
AleI	CACNNNNGTG	1 cut(s)	251
AluBI	AGCT	6 cut(s)	48, 92, 151, 1467, 1613, 1621
AluI	AGCT	6 cut(s)	48, 92, 151, 1467, 1613, 1621
Alw21I	GWGCWC	1 cut(s)	1188
Alw26I	GTCTC	3 cut(s)	274, 1123, 1308
Aor13HI	TCCGGA	1 cut(s)	1523
AoxI	GGCC	3 cut(s)	221, 996, 1101
ApeKI	GCWGC	1 cut(s)	1467
ApoI	RAATTY	4 cut(s)	96, 920, 1094, 1123
ArsI	GACNNNNNNTTYG	2 cut(s)	1108, 1140
AseI	ATTAAT	1 cut(s)	543
AspS9I	GGNCC	1 cut(s)	222
AsuHPI	GGTGA	5 cut(s)	661, 730, 1151, 1207, 1505
BalI	TGGCCA	1 cut(s)	998
BarI	GAAGNNNNNNTAC	2 cut(s)	1519, 1551
BbsI	GAAGAC	3 cut(s)	971, 1257, 1389
Bbv12I	GWGCWC	1 cut(s)	1188
BbvCI	CCTCAGC	1 cut(s)	1261
BbvI	GCAGC	1 cut(s)	1454
BccI	CCATC	3 cut(s)	321, 548, 1067
BcgI	CGANNNNNNTGC	2 cut(s)	1238, 1272
BclI	TGATCA	2 cut(s)	415, 481
BcoDI	GTCTC	3 cut(s)	274, 1123, 1308
BfaI	CTAG	5 cut(s)	32, 45, 219, 975, 1239
BfmI	CTRYAG	2 cut(s)	958, 1462
BisI	GCNGC	1 cut(s)	1468
BlsI	GCNGC	1 cut(s)	1469
BmcAI	AGTACT	1 cut(s)	1597
BmgT120I	GGNCC	1 cut(s)	222
BmsI	GCATC	3 cut(s)	27, 156, 1365
BpiI	GAAGAC	3 cut(s)	971, 1257, 1389
Bpu10I	CCTNAGC	1 cut(s)	1261
BpuEI	CTTGAG	1 cut(s)	256
BsaJI	CCNNGG	4 cut(s)	225, 1047, 1068, 1540
BsaWI	WCCGGW	1 cut(s)	1523
Bsc4I	CCNNNNNNNGG	2 cut(s)	1053, 1530
Bse118I	RCCGGY	1 cut(s)	1136
Bse1I	ACTGG	1 cut(s)	1462
Bse3DI	GCAATG	1 cut(s)	1341
BseAI	TCCGGA	1 cut(s)	1523
BseDI	CCNNGG	4 cut(s)	225, 1047, 1068, 1540
BseGI	GGATG	1 cut(s)	1078
BseLI	CCNNNNNNNGG	2 cut(s)	1053, 1530
BseMI	GCAATG	1 cut(s)	1341
BseMII	CTCAG	2 cut(s)	825, 1275
BseNI	ACTGG	1 cut(s)	1462
BseXI	GCAGC	1 cut(s)	1454
BshFI	GGCC	3 cut(s)	223, 998, 1103
BsiHKAI	GWGCWC	1 cut(s)	1188
BsiSI	CCGG	2 cut(s)	1137, 1524
BslFI	GGGAC	2 cut(s)	662, 758
BslI	CCNNNNNNNGG	2 cut(s)	1053, 1530
BsmAI	GTCTC	3 cut(s)	274, 1123, 1308
BsmFI	GGGAC	2 cut(s)	662, 758
BsmI	GAATGC	1 cut(s)	1272
BsnI	GGCC	3 cut(s)	223, 998, 1103
Bsp1286I	GDGCHC	1 cut(s)	1188
Bsp13I	TCCGGA	1 cut(s)	1523
Bsp143I	GATC	5 cut(s)	101, 415, 481, 885, 1153
Bsp19I	CCATGG	2 cut(s)	1047, 1068
BspACI	CCGC	2 cut(s)	533, 765
BspANI	GGCC	3 cut(s)	223, 998, 1103
BspCNI	CTCAG	2 cut(s)	824, 1274
BspEI	TCCGGA	1 cut(s)	1523
BspHI	TCATGA	1 cut(s)	412
BsrDI	GCAATG	1 cut(s)	1341
BsrFI	RCCGGY	1 cut(s)	1136
BsrI	ACTGG	1 cut(s)	1462
BssAI	RCCGGY	1 cut(s)	1136
BssECI	CCNNGG	4 cut(s)	225, 1047, 1068, 1540
BssMI	GATC	5 cut(s)	101, 415, 481, 885, 1153
BssT1I	CCWWGG	4 cut(s)	225, 1047, 1068, 1540
Bst4CI	ACNGT	5 cut(s)	268, 745, 1006, 1323, 1564
BstC8I	GCNNGC	2 cut(s)	871, 1472
BstDEI	CTNAG	4 cut(s)	811, 875, 1180, 1261
BstDSI	CCRYGG	2 cut(s)	1047, 1068
BstF5I	GGATG	1 cut(s)	1078
BstKTI	GATC	5 cut(s)	104, 418, 484, 888, 1156
BstMAI	GTCTC	3 cut(s)	274, 1123, 1308
BstMBI	GATC	5 cut(s)	101, 415, 481, 885, 1153
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 1467
BstNSI	RCATGY	5 cut(s)	280, 695, 873, 934, 1136
BstSFI	CTRYAG	2 cut(s)	958, 1462
BstV1I	GCAGC	1 cut(s)	1454
BstV2I	GAAGAC	3 cut(s)	971, 1257, 1389
BstXI	CCANNNNNNTGG	1 cut(s)	916
BsuRI	GGCC	3 cut(s)	223, 998, 1103
BtgI	CCRYGG	2 cut(s)	1047, 1068
BtsCI	GGATG	1 cut(s)	1078
Cac8I	GCNNGC	2 cut(s)	871, 1472
CciI	TCATGA	1 cut(s)	412
Cfr10I	RCCGGY	1 cut(s)	1136
Cfr13I	GGNCC	1 cut(s)	222
CseI	GACGC	3 cut(s)	239, 1463, 1514
Csp6I	GTAC	4 cut(s)	664, 695, 1536, 1596
CviQI	GTAC	4 cut(s)	664, 695, 1536, 1596
DdeI	CTNAG	4 cut(s)	811, 875, 1180, 1261
DpnI	GATC	5 cut(s)	103, 417, 483, 887, 1155
DpnII	GATC	5 cut(s)	101, 415, 481, 885, 1153
DraI	TTTAAA	1 cut(s)	88
EaeI	YGGCCR	1 cut(s)	996
Eco130I	CCWWGG	4 cut(s)	225, 1047, 1068, 1540
Eco57I	CTGAAG	1 cut(s)	1083
EcoRI	GAATTC	1 cut(s)	1123
EcoT14I	CCWWGG	4 cut(s)	225, 1047, 1068, 1540
ErhI	CCWWGG	4 cut(s)	225, 1047, 1068, 1540
FalI	AAGNNNNNCTT	2 cut(s)	1276, 1308
FaqI	GGGAC	2 cut(s)	662, 758
FauNDI	CATATG	2 cut(s)	966, 1435
FbaI	TGATCA	2 cut(s)	415, 481
FblI	GTMKAC	1 cut(s)	1477
Fnu4HI	GCNGC	1 cut(s)	1468
FokI	GGATG	1 cut(s)	1085
Fsp4HI	GCNGC	1 cut(s)	1468
FspBI	CTAG	5 cut(s)	32, 45, 219, 975, 1239
GluI	GCNGC	1 cut(s)	1468
HaeIII	GGCC	3 cut(s)	223, 998, 1103
HapII	CCGG	2 cut(s)	1137, 1524
HgaI	GACGC	3 cut(s)	239, 1463, 1514
HincII	GTYRAC	1 cut(s)	1478
HindII	GTYRAC	1 cut(s)	1478
HindIII	AAGCTT	1 cut(s)	1611
HinfI	GANTC	4 cut(s)	470, 1142, 1253, 1301
HpaII	CCGG	2 cut(s)	1137, 1524
HphI	GGTGA	5 cut(s)	661, 730, 1151, 1207, 1505
Hpy166II	GTNNAC	1 cut(s)	1478
Hpy188I	TCNGA	5 cut(s)	885, 1063, 1080, 1092, 1116
Hpy188III	TCNNGA	5 cut(s)	413, 802, 1128, 1524, 1626
Hpy8I	GTNNAC	1 cut(s)	1478
Hpy99I	CGWCG	1 cut(s)	1479
HpyAV	CCTTC	5 cut(s)	842, 854, 1372, 1484, 1521
HpyCH4III	ACNGT	5 cut(s)	268, 745, 1006, 1323, 1564
HpyCH4IV	ACGT	1 cut(s)	1410
HpyCH4V	TGCA	7 cut(s)	57, 686, 1175, 1356, 1433, 1470, 1500
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 1467
HpyF3I	CTNAG	4 cut(s)	811, 875, 1180, 1261
HpySE526I	ACGT	1 cut(s)	1410
Kpn2I	TCCGGA	1 cut(s)	1523
Ksp22I	TGATCA	2 cut(s)	415, 481
Kzo9I	GATC	5 cut(s)	101, 415, 481, 885, 1153
Lsp1109I	GCAGC	1 cut(s)	1454
LweI	GCATC	3 cut(s)	27, 156, 1365
MaeI	CTAG	5 cut(s)	32, 45, 219, 975, 1239
MaeII	ACGT	1 cut(s)	1410
MaeIII	GTNAC	2 cut(s)	926, 1030
MalI	GATC	5 cut(s)	103, 417, 483, 887, 1155
MboI	GATC	5 cut(s)	101, 415, 481, 885, 1153
MhlI	GDGCHC	1 cut(s)	1188
MlsI	TGGCCA	1 cut(s)	998
MluNI	TGGCCA	1 cut(s)	998
MlyI	GAGTC	3 cut(s)	464, 1247, 1310
MmeI	TCCRAC	1 cut(s)	1256
MnlI	CCTC	9 cut(s)	289, 346, 846, 906, 1114, 1270, 1359, 1400, 1572
Mox20I	TGGCCA	1 cut(s)	998
MroI	TCCGGA	1 cut(s)	1523
MscI	TGGCCA	1 cut(s)	998
MseI	TTAA	3 cut(s)	87, 543, 1407
MslI	CAYNNNNRTG	7 cut(s)	251, 335, 365, 552, 639, 1137, 1491
Msp20I	TGGCCA	1 cut(s)	998
MspA1I	CMGCKG	1 cut(s)	1467
MspI	CCGG	2 cut(s)	1137, 1524
Mva1269I	GAATGC	1 cut(s)	1272
MwoI	GCNNNNNNNGC	2 cut(s)	54, 1467
NcoI	CCATGG	2 cut(s)	1047, 1068
NdeI	CATATG	2 cut(s)	966, 1435
NdeII	GATC	5 cut(s)	101, 415, 481, 885, 1153
NspI	RCATGY	5 cut(s)	280, 695, 873, 934, 1136
OliI	CACNNNNGTG	1 cut(s)	251
PaeI	GCATGC	1 cut(s)	873
PagI	TCATGA	1 cut(s)	412
PciI	ACATGT	2 cut(s)	691, 930
PctI	GAATGC	1 cut(s)	1272
PfeI	GAWTC	1 cut(s)	1142
PflMI	CCANNNNNTGG	1 cut(s)	1053
PkrI	GCNGC	1 cut(s)	1469
PleI	GAGTC	3 cut(s)	464, 1247, 1309
PpsI	GAGTC	3 cut(s)	464, 1247, 1309
PscI	ACATGT	2 cut(s)	691, 930
PshBI	ATTAAT	1 cut(s)	543
PsiI	TTATAA	1 cut(s)	945
PspPI	GGNCC	1 cut(s)	222
PvuII	CAGCTG	1 cut(s)	1467
RsaI	GTAC	4 cut(s)	665, 696, 1537, 1597
RsaNI	GTAC	4 cut(s)	664, 695, 1536, 1596
RseI	CAYNNNNRTG	7 cut(s)	251, 335, 365, 552, 639, 1137, 1491
SalI	GTCGAC	1 cut(s)	1476
SaqAI	TTAA	3 cut(s)	87, 543, 1407
SatI	GCNGC	1 cut(s)	1468
Sau3AI	GATC	5 cut(s)	101, 415, 481, 885, 1153
Sau96I	GGNCC	1 cut(s)	222
ScaI	AGTACT	1 cut(s)	1597
SchI	GAGTC	3 cut(s)	464, 1247, 1310
SduI	GDGCHC	1 cut(s)	1188
SfaNI	GCATC	3 cut(s)	27, 156, 1365
SfcI	CTRYAG	2 cut(s)	958, 1462
SmiMI	CAYNNNNRTG	7 cut(s)	251, 335, 365, 552, 639, 1137, 1491
SmlI	CTYRAG	1 cut(s)	271
SmoI	CTYRAG	1 cut(s)	271
SphI	GCATGC	1 cut(s)	873
SsiI	CCGC	2 cut(s)	533, 765
SspI	AATATT	1 cut(s)	1311
SspMI	CTAG	5 cut(s)	32, 45, 219, 975, 1239
StyI	CCWWGG	4 cut(s)	225, 1047, 1068, 1540
TaaI	ACNGT	5 cut(s)	268, 745, 1006, 1323, 1564
TaiI	ACGT	1 cut(s)	1413
TaqI	TCGA	4 cut(s)	100, 699, 1127, 1477
TatI	WGTACW	3 cut(s)	663, 694, 1595
TfiI	GAWTC	1 cut(s)	1142
Tru1I	TTAA	3 cut(s)	87, 543, 1407
Tru9I	TTAA	3 cut(s)	87, 543, 1407
TseI	GCWGC	1 cut(s)	1467
TspGWI	ACGGA	1 cut(s)	1135
Van91I	CCANNNNNTGG	1 cut(s)	1053
VspI	ATTAAT	1 cut(s)	543
XapI	RAATTY	4 cut(s)	96, 920, 1094, 1123
XceI	RCATGY	5 cut(s)	280, 695, 873, 934, 1136
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1006
XmiI	GTMKAC	1 cut(s)	1477
XspI	CTAG	5 cut(s)	32, 45, 219, 975, 1239
ZrmI	AGTACT	1 cut(s)	1597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.