Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002671

Physical Location & Seq

Genomic Coordinates Reverse (-)

14515003 .. 14518957

Gene Structure 3955 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37033

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1647 bp

ATGAACAGCTTTGCTTGTTTTGGCCAGAAATTGCACCACCTTTGCACTTGTTCATTTCTCAAACTAGCATTTCTTAGCCAATCCATGGGATTTCTACTTCTATGCTATTATCGATTTCTTCTTCTTAGAGCTAAGCCATTCTGGGTGGAACTAGTTTATTTTGTCACCCTTTCCTTTTTGGGTTATTGGGTTCTCAAGGTATTGCCAGTTAGAACCACCGACTCTTTTACCCCTAGGAACTTAGATTTGTTCTTCACCTCAGTTTCTGCCACAACTGTTTCGAGCATGTCCACAGTTGAAATGGAGGTCTTCTCCAATGGCCAGCTCATCTTAATGACCATCCTAATGTTCATAGGTGGGGAGGTCTTCACCTCCATGGTTGGACTTCATTTCAAGAAGTTCAAGCTCATGATGATGATGAGCACAAAAGAGAAGATTACTTCAGTTAACAGCGATGTTAGCTCTTCATCAAGTCCCGCAAAGGCGATTGATGAGAATATTGAATTGGGCTTGGCAATCAAGCCCGAATTTCCTCATGAGCAAATTGATATAATTGCAGCAGTAGATGATCAATCCTTGACACTTCAGAATTCCATTAACCTTTTGGGTTACGTTGTTTTAGCTTATCTTCTAGTGGTTCATTTCCTTGGGGTGGCTATGGTTTTGGTTTATCTAGCATTTACTTCAAGTGCAAGAAACATAGTAAAGAACAAGGGGATAAATGTTCATACATTCTCATTTTTCACCACAGTTTCAACTTTCTCAAGTTGTGGTTTTGTTCCCACCAATGAAAACATGATTGTCTTTAGCAAAAACTCCGGTCTCCTTTTAATACTCATTCCTCAAGTCCTTCTTGGGAACACATTGTATCCATCTTGCTTGAGATTTTCAATTTGGCTTTTGGGAAAAAATTTCAAAAAGCAAAGAGATTCTTGCAATTACCTGTTGAAGAACACAAAGGAGGTTGGATACCTACACTTGCTTCCTAGTCTGCACTCATCACTCTTGGTCGTTACAGTTTTTGGGTTCATCCTGGTACAACTTCTACCTTTTGCCTCCATGGAGTGGAGTTCAGAAAGCTTAAGTGGACTTAATTCTTACCAGAAAATCATTGGATCTTTGTTCCAAACCGTCAATTCAAGACATACCGGTGAAACCATCGTCGACCTCTCCATCATTTCTCCCGCAATCTTGGTATTATTTATCGTGATGATGTATCTTCCTCCTTACACTTCGTTTCTCCCCGCTATAGAAAATGATCGATATGATCTACAATCTCATGATCAGAGGAAGAAAAAGAGAAGAGGAAAGCTCATGGATAATCTCATATTCTCACAGCTCTCCTATTTGACCATATTTATCATTTTAGTCTGCATAACGGAGAGGAAAAGCTTGAAAGAAGATCCTCTCAATTTCAATGTACTCAATATCGTGCTTGAAGTCATCAGTGCTTATGGAAATGTAGGGTTTACGACCGGCTATAGTTGTAAACGCCAGCTCAACCCTAACGGCGATTGTCAGGATAGATTGTATGGATTTTCAGGAAGATGGAGTGACGAGGGGAAAATAGTTCTTATAGCTGTCATGTTCTTCGGAAGACTCAAGAAATTCAACATGGATGGAGGTAAAGGATGGAAGCTCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006814 GO:0008150 GO:0008324 GO:0015075 GO:0015077 GO:0015081 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0035725 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TrkH

Protein Analysis

548

Amino Acids

61.82

Weight (kDa)

9.09

Isoelectric Point (pI)

35.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TrkH	PF02386	198 - 535	7.8e-31	Cation transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10310
fragaria_vesca	FvH4_4g06400 FvH4_4g06412 FvH4_4g06420 FvH4_4g06420 FvH4_4g06420 FvH4_4g06420
malus_domestica	MD16G1240400.v1.1
prunus_persica	Prupe.1G066800_v2.0.a1 Prupe.1G067100_v2.0.a1
pyrus_communis	pycom16g20110
rosa_chinensis	RchiOBHm_Chr4g0398141 RchiOBHm_Chr4g0398151
rosa_laevigata	RLG00000009382 RLG00000009383 RLG00000035139
rosa_multiflora	Rmu_sc0002035.1_g000011 Rmu_sc0002378.1_g000014 Rmu_sc0002378.1_g000025 Rmu_sc0008195.1_g000011 Rmu_sc0023295.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023290 Rroxscaffold_5G00343040 Rroxscaffold_5G00343070
rosa_rugosa	Rorug04G0006300 Rorug04G0006600 Rorug05G0304200
rosa_samantha	Rh4AG083400 Rh4AG083500 Rh4BG081100 Rh4BG081300 Rh4CG090400 Rh4CG090600 Rh4DG076000 Rh4DG076300 Rh5BG384700 Rh5DG398100
rosa_wichuraiana	Rw4G006930 Rw4G006940 Rw5G035170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	85, 1065
AccI	GTMKAC	1 cut(s)	1164
AciI	CCGC	3 cut(s)	477, 1185, 1245
AclWI	GGATC	2 cut(s)	1123, 1397
AcoI	YGGCCR	2 cut(s)	22, 319
AcsI	RAATTY	4 cut(s)	527, 589, 910, 1607
AcuI	CTGAAG	2 cut(s)	426, 569
AfaI	GTAC	2 cut(s)	1038, 1422
AfiI	CCNNNNNNNGG	3 cut(s)	85, 652, 1065
AflII	CTTAAG	1 cut(s)	1081
AgeI	ACCGGT	1 cut(s)	1148
AhlI	ACTAGT	1 cut(s)	151
AjnI	CCWGG	1 cut(s)	1032
AjuI	GAANNNNNNNTTGG	2 cut(s)	488, 520
Alw21I	GWGCWC	1 cut(s)	425
Alw26I	GTCTC	1 cut(s)	827
AlwI	GGATC	2 cut(s)	1123, 1397
AlwNI	CAGNNNCTG	1 cut(s)	266
AoxI	GGCC	2 cut(s)	22, 319
ApeKI	GCWGC	1 cut(s)	557
ApoI	RAATTY	4 cut(s)	527, 589, 910, 1607
AsiGI	ACCGGT	1 cut(s)	1148
AspA2I	CCTAGG	1 cut(s)	233
AsuHPI	GGTGA	5 cut(s)	157, 247, 361, 736, 1163
AvrII	CCTAGG	1 cut(s)	233
BalI	TGGCCA	2 cut(s)	24, 321
BbsI	GAAGAC	3 cut(s)	301, 358, 1603
Bbv12I	GWGCWC	1 cut(s)	425
BbvI	GCAGC	1 cut(s)	569
BccI	CCATC	7 cut(s)	347, 880, 1166, 1181, 1542, 1613, 1626
BceAI	ACGGC	1 cut(s)	1525
BciT130I	CCWGG	1 cut(s)	1034
BciVI	GTATCC	2 cut(s)	879, 962
BclI	TGATCA	2 cut(s)	568, 1282
BcoDI	GTCTC	1 cut(s)	827
BcuI	ACTAGT	1 cut(s)	151
BfaI	CTAG	6 cut(s)	65, 152, 234, 632, 674, 987
BfmI	CTRYAG	2 cut(s)	1248, 1480
BfrI	CTTAAG	1 cut(s)	1081
BfuI	GTATCC	2 cut(s)	879, 962
BisI	GCNGC	1 cut(s)	558
BlnI	CCTAGG	1 cut(s)	233
BlpI	GCTNAGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	559
Bme1390I	CCNGG	1 cut(s)	1034
BmrFI	CCNGG	1 cut(s)	1034
BpiI	GAAGAC	3 cut(s)	301, 358, 1603
BplI	GAGNNNNNCTC	4 cut(s)	296, 328, 1296, 1328
Bpu1102I	GCTNAGC	1 cut(s)	132
BpuEI	CTTGAG	5 cut(s)	179, 748, 828, 901, 1586
Bsa29I	ATCGAT	2 cut(s)	112, 1261
BsaI	GGTCTC	1 cut(s)	827
BsaJI	CCNNGG	5 cut(s)	84, 233, 375, 646, 1059
BsaWI	WCCGGW	2 cut(s)	818, 1148
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 652, 1065
Bse118I	RCCGGY	2 cut(s)	1148, 1475
Bse1I	ACTGG	1 cut(s)	206
BseBI	CCWGG	1 cut(s)	1034
BseCI	ATCGAT	2 cut(s)	112, 1261
BseDI	CCNNGG	5 cut(s)	84, 233, 375, 646, 1059
BseGI	GGATG	4 cut(s)	339, 1029, 1624, 1637
BseLI	CCNNNNNNNGG	3 cut(s)	85, 652, 1065
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	1 cut(s)	206
BseRI	GAGGAG	1 cut(s)	1631
BseXI	GCAGC	1 cut(s)	569
BsgI	GTGCAG	1 cut(s)	977
Bsh1285I	CGRYCG	1 cut(s)	1476
BshFI	GGCC	2 cut(s)	24, 321
BshTI	ACCGGT	1 cut(s)	1148
BshVI	ATCGAT	2 cut(s)	112, 1261
BsiEI	CGRYCG	1 cut(s)	1476
BsiHKAI	GWGCWC	1 cut(s)	425
BsiSI	CCGG	3 cut(s)	819, 1149, 1476
BslFI	GGGAC	1 cut(s)	459
BslI	CCNNNNNNNGG	3 cut(s)	85, 652, 1065
BsmAI	GTCTC	1 cut(s)	827
BsmFI	GGGAC	1 cut(s)	459
BsnI	GGCC	2 cut(s)	24, 321
Bso31I	GGTCTC	1 cut(s)	827
Bsp1286I	GDGCHC	1 cut(s)	425
Bsp143I	GATC	6 cut(s)	568, 1115, 1258, 1267, 1282, 1402
Bsp1720I	GCTNAGC	1 cut(s)	132
Bsp19I	CCATGG	3 cut(s)	84, 375, 1059
BspACI	CCGC	3 cut(s)	477, 1185, 1245
BspANI	GGCC	2 cut(s)	24, 321
BspCNI	CTCAG	1 cut(s)	272
BspDI	ATCGAT	2 cut(s)	112, 1261
BspHI	TCATGA	3 cut(s)	408, 535, 1279
BspPI	GGATC	2 cut(s)	1123, 1397
BspQI	GCTCTTC	1 cut(s)	469
BspTI	CTTAAG	1 cut(s)	1081
BspTNI	GGTCTC	1 cut(s)	827
BsrFI	RCCGGY	2 cut(s)	1148, 1475
BsrI	ACTGG	1 cut(s)	206
BssAI	RCCGGY	2 cut(s)	1148, 1475
BssECI	CCNNGG	5 cut(s)	84, 233, 375, 646, 1059
BssMI	GATC	6 cut(s)	568, 1115, 1258, 1267, 1282, 1402
BssT1I	CCWWGG	5 cut(s)	84, 233, 375, 646, 1059
Bst2UI	CCWGG	1 cut(s)	1034
Bst4CI	ACNGT	5 cut(s)	277, 295, 751, 1018, 1132
Bst6I	CTCTTC	2 cut(s)	469, 1297
BstAFI	CTTAAG	1 cut(s)	1081
BstC8I	GCNNGC	2 cut(s)	323, 1496
BstDEI	CTNAG	5 cut(s)	74, 125, 132, 241, 259
BstDSI	CCRYGG	3 cut(s)	84, 375, 1059
BstF5I	GGATG	4 cut(s)	339, 1029, 1624, 1637
BstKTI	GATC	6 cut(s)	571, 1118, 1261, 1270, 1285, 1405
BstMAI	GTCTC	1 cut(s)	827
BstMBI	GATC	6 cut(s)	568, 1115, 1258, 1267, 1282, 1402
BstMCI	CGRYCG	1 cut(s)	1476
BstMWI	GCNNNNNNNGC	1 cut(s)	459
BstNI	CCWGG	1 cut(s)	1034
BstNSI	RCATGY	1 cut(s)	289
BstSCI	CCNGG	1 cut(s)	1032
BstSFI	CTRYAG	2 cut(s)	1248, 1480
BstV1I	GCAGC	1 cut(s)	569
BstV2I	GAAGAC	3 cut(s)	301, 358, 1603
BstX2I	RGATCY	2 cut(s)	1115, 1402
BstYI	RGATCY	2 cut(s)	1115, 1402
Bsu15I	ATCGAT	2 cut(s)	112, 1261
BsuI	GTATCC	2 cut(s)	879, 962
BsuRI	GGCC	2 cut(s)	24, 321
BsuTUI	ATCGAT	2 cut(s)	112, 1261
BtgI	CCRYGG	3 cut(s)	84, 375, 1059
BtgZI	GCGATG	1 cut(s)	468
BtsCI	GGATG	4 cut(s)	339, 1029, 1624, 1637
BtsIMutI	CAGTG	1 cut(s)	1453
Cac8I	GCNNGC	2 cut(s)	323, 1496
CaiI	CAGNNNCTG	1 cut(s)	266
CciI	TCATGA	3 cut(s)	408, 535, 1279
Cfr10I	RCCGGY	2 cut(s)	1148, 1475
ClaI	ATCGAT	2 cut(s)	112, 1261
Csp6I	GTAC	2 cut(s)	1037, 1421
CspAI	ACCGGT	1 cut(s)	1148
CviQI	GTAC	2 cut(s)	1037, 1421
DdeI	CTNAG	5 cut(s)	74, 125, 132, 241, 259
DpnI	GATC	6 cut(s)	570, 1117, 1260, 1269, 1284, 1404
DpnII	GATC	6 cut(s)	568, 1115, 1258, 1267, 1282, 1402
EaeI	YGGCCR	2 cut(s)	22, 319
Eam1104I	CTCTTC	2 cut(s)	469, 1297
EarI	CTCTTC	2 cut(s)	469, 1297
Eco130I	CCWWGG	5 cut(s)	84, 233, 375, 646, 1059
Eco31I	GGTCTC	1 cut(s)	827
Eco57I	CTGAAG	2 cut(s)	426, 569
EcoRI	GAATTC	1 cut(s)	589
EcoRII	CCWGG	1 cut(s)	1032
EcoT14I	CCWWGG	5 cut(s)	84, 233, 375, 646, 1059
ErhI	CCWWGG	5 cut(s)	84, 233, 375, 646, 1059
FalI	AAGNNNNNCTT	4 cut(s)	837, 869, 916, 948
FaqI	GGGAC	1 cut(s)	459
FauI	CCCGC	3 cut(s)	484, 1192, 1252
FbaI	TGATCA	2 cut(s)	568, 1282
FblI	GTMKAC	1 cut(s)	1164
Fnu4HI	GCNGC	1 cut(s)	558
FokI	GGATG	3 cut(s)	326, 1016, 1631
Fsp4HI	GCNGC	1 cut(s)	558
FspBI	CTAG	6 cut(s)	65, 152, 234, 632, 674, 987
GluI	GCNGC	1 cut(s)	558
HaeIII	GGCC	2 cut(s)	24, 321
HapII	CCGG	3 cut(s)	819, 1149, 1476
HincII	GTYRAC	2 cut(s)	448, 1165
HindII	GTYRAC	2 cut(s)	448, 1165
HindIII	AAGCTT	2 cut(s)	1078, 1390
HinfI	GANTC	3 cut(s)	221, 929, 1599
HpaI	GTTAAC	1 cut(s)	448
HpaII	CCGG	3 cut(s)	819, 1149, 1476
HphI	GGTGA	5 cut(s)	157, 247, 361, 736, 1163
Hpy166II	GTNNAC	6 cut(s)	291, 448, 1088, 1165, 1470, 1490
Hpy188I	TCNGA	4 cut(s)	588, 1075, 1287, 1595
Hpy188III	TCNNGA	9 cut(s)	394, 409, 536, 1140, 1207, 1280, 1520, 1542, 1603
Hpy8I	GTNNAC	6 cut(s)	291, 448, 1088, 1165, 1470, 1490
Hpy99I	CGWCG	1 cut(s)	1166
HpyAV	CCTTC	1 cut(s)	860
HpyCH4III	ACNGT	5 cut(s)	277, 295, 751, 1018, 1132
HpyCH4IV	ACGT	1 cut(s)	612
HpyCH4V	TGCA	7 cut(s)	34, 45, 557, 692, 936, 994, 1374
HpyF10VI	GCNNNNNNNGC	1 cut(s)	459
HpyF3I	CTNAG	5 cut(s)	74, 125, 132, 241, 259
HpySE526I	ACGT	1 cut(s)	612
Ksp22I	TGATCA	2 cut(s)	568, 1282
KspAI	GTTAAC	1 cut(s)	448
Kzo9I	GATC	6 cut(s)	568, 1115, 1258, 1267, 1282, 1402
LguI	GCTCTTC	1 cut(s)	469
LmnI	GCTCC	1 cut(s)	1644
Lsp1109I	GCAGC	1 cut(s)	569
MaeI	CTAG	6 cut(s)	65, 152, 234, 632, 674, 987
MaeII	ACGT	1 cut(s)	612
MaeIII	GTNAC	4 cut(s)	163, 608, 1012, 1553
MalI	GATC	6 cut(s)	570, 1117, 1260, 1269, 1284, 1404
MboI	GATC	6 cut(s)	568, 1115, 1258, 1267, 1282, 1402
MflI	RGATCY	2 cut(s)	1115, 1402
MhlI	GDGCHC	1 cut(s)	425
MlsI	TGGCCA	2 cut(s)	24, 321
MluNI	TGGCCA	2 cut(s)	24, 321
MlyI	GAGTC	2 cut(s)	215, 1593
MmeI	TCCRAC	2 cut(s)	361, 946
Mox20I	TGGCCA	2 cut(s)	24, 321
MscI	TGGCCA	2 cut(s)	24, 321
MseI	TTAA	6 cut(s)	332, 447, 597, 830, 1082, 1092
MslI	CAYNNNNRTG	5 cut(s)	332, 344, 374, 413, 1149
Msp20I	TGGCCA	2 cut(s)	24, 321
MspCI	CTTAAG	1 cut(s)	1081
MspI	CCGG	3 cut(s)	819, 1149, 1476
MspR9I	CCNGG	1 cut(s)	1034
MvaI	CCWGG	1 cut(s)	1034
MwoI	GCNNNNNNNGC	1 cut(s)	459
NcoI	CCATGG	3 cut(s)	84, 375, 1059
NdeII	GATC	6 cut(s)	568, 1115, 1258, 1267, 1282, 1402
NmuCI	GTSAC	2 cut(s)	163, 1553
NspI	RCATGY	1 cut(s)	289
PagI	TCATGA	3 cut(s)	408, 535, 1279
PciSI	GCTCTTC	1 cut(s)	469
PfeI	GAWTC	1 cut(s)	929
PflMI	CCANNNNNTGG	2 cut(s)	85, 1065
PinAI	ACCGGT	1 cut(s)	1148
PkrI	GCNGC	1 cut(s)	559
PleI	GAGTC	2 cut(s)	215, 1593
PpsI	GAGTC	2 cut(s)	215, 1593
Psp6I	CCWGG	1 cut(s)	1032
PspGI	CCWGG	1 cut(s)	1032
PstNI	CAGNNNCTG	1 cut(s)	266
PsuI	RGATCY	2 cut(s)	1115, 1402
RsaI	GTAC	2 cut(s)	1038, 1422
RsaNI	GTAC	2 cut(s)	1037, 1421
RseI	CAYNNNNRTG	5 cut(s)	332, 344, 374, 413, 1149
SalI	GTCGAC	1 cut(s)	1163
SapI	GCTCTTC	1 cut(s)	469
SaqAI	TTAA	6 cut(s)	332, 447, 597, 830, 1082, 1092
SatI	GCNGC	1 cut(s)	558
Sau3AI	GATC	6 cut(s)	568, 1115, 1258, 1267, 1282, 1402
SchI	GAGTC	2 cut(s)	215, 1593
ScrFI	CCNGG	1 cut(s)	1034
SduI	GDGCHC	1 cut(s)	425
SfcI	CTRYAG	2 cut(s)	1248, 1480
SmiMI	CAYNNNNRTG	5 cut(s)	332, 344, 374, 413, 1149
SmlI	CTYRAG	6 cut(s)	194, 763, 843, 880, 1081, 1601
SmoI	CTYRAG	6 cut(s)	194, 763, 843, 880, 1081, 1601
SpeI	ACTAGT	1 cut(s)	151
SsiI	CCGC	3 cut(s)	477, 1185, 1245
SspI	AATATT	1 cut(s)	499
SspMI	CTAG	6 cut(s)	65, 152, 234, 632, 674, 987
StyD4I	CCNGG	1 cut(s)	1032
StyI	CCWWGG	5 cut(s)	84, 233, 375, 646, 1059
TaaI	ACNGT	5 cut(s)	277, 295, 751, 1018, 1132
TaiI	ACGT	1 cut(s)	615
TaqI	TCGA	4 cut(s)	112, 281, 1164, 1261
TatI	WGTACW	1 cut(s)	1420
TfiI	GAWTC	1 cut(s)	929
Tru1I	TTAA	6 cut(s)	332, 447, 597, 830, 1082, 1092
Tru9I	TTAA	6 cut(s)	332, 447, 597, 830, 1082, 1092
TscAI	CASTG	1 cut(s)	1453
TseFI	GTSAC	2 cut(s)	163, 1553
TseI	GCWGC	1 cut(s)	557
Tsp45I	GTSAC	2 cut(s)	163, 1553
TspDTI	ATGAA	9 cut(s)	17, 42, 340, 377, 456, 629, 716, 804, 1018
TspGWI	ACGGA	1 cut(s)	1394
TspRI	CASTG	1 cut(s)	1453
Van91I	CCANNNNNTGG	2 cut(s)	85, 1065
Vha464I	CTTAAG	1 cut(s)	1081
XapI	RAATTY	4 cut(s)	527, 589, 910, 1607
XceI	RCATGY	1 cut(s)	289
XcmI	CCANNNNNNNNNTGG	3 cut(s)	298, 601, 1109
XmaJI	CCTAGG	1 cut(s)	233
XmiI	GTMKAC	1 cut(s)	1164
XspI	CTAG	6 cut(s)	65, 152, 234, 632, 674, 987

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.