Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002671

Physical Location & Seq

Genomic Coordinates Reverse (-)

14172893 .. 14174185

Gene Structure 1293 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG081300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGCCAGGCCATTCTCTCATATCAGAAAGATGAAGAACGTTTTTGTTCCTTGTCGTAGGAAATTAGAGGGCATTTCATGCATTCACAAACTCCCTTGCATCCGCCAATCTTCTTGTAAAGGTCTAATTCGTTCACTGTTTCGCTTCCTACCCTTCCTTTTAAATCCTTTCATTATCGAACTTATTTACGTTTTAATGGTCTCTGTCCTGGGTTATTTGGCTTTGAGGGTCACAAAACCAAGAACTAGAACTTCCTTTAGGCCCAAGGATTTTGATTTGTTCTTCACATCTGTGTCTTCCACAACAGTAGCAAGCATGTCAACTGTAGAAATGGAGGTCTTTTCAAACACCCAACTCATCATTATGACCATTTTGATGCTGGCGGGTGGAGAGGTTTTCACTTCCTTGCTTGGACTTCAAATTGCAAAGTCCAAGATTGCCAAATTTCATGATAATAACAAAGTTGATGTAGAACTCAGCTCTTCTAATAAGGCCTCCTTCGATCGAATAGAATTTCAAGATAACAAAGTTGATGTAGAACTCAACTCTTCTAATAAGGCCTCCTTCGATCGAATAGAGTTAGGTTTGGTTACCCTTTCACAGTTAGAGAGTGAGCAGAAACCTAACATTCATAATGGTTTAAAAACCTTTGACAAGGATATCAAGTACAAGTCTCTTAGGTGTCTGGCCTATGTGGTTTTAGGTTATCTTCTAGTGGTTCATATAGGTGGTTCCAGTTTAGTTTCATTGTACATTATCCTTGTTCCAAGTGCAAGACAAGTACTGAAAAACAAAGGCATTGAAACCCAAACCTTTGCTGTTTTCACCGCGGTTTCCACCTTTGCAAACTGTGGTTTTGTCCCCACAAACGAGAATATGATCATTTTCAGGAACAATTCTGGGCTTTTACTTCTTCTAATTCCCCAAATCCTTCTTGGAAACACCTTATATCCCGTGATACTTCGATTTGTGATTTGGGGTTTGGAGAAAATCACAAGGAGGGTGGAGTTCAGTTACATATTGAAGAATCATAATGAATTGGGTTACAGTCATATGCTATCTGGTCTTCATTCTCTTCTTCTACTTGCCACTGTCTTGGGGTTCATAGCAGTTCAGCTGATACTATTTTGTGCCATGGAGTGGAAATCTGAACCCATGGATGGTCTGAGTGGCTATCAGAAATTTGTGGCGTCATTGTTTCAAACGGTGAATTCCAGGCATGCTGGTGAATCGGTTGTTGATCTCTCCATCATCTCTCCTGCAATCTTGGTGCTATTTGTCTTGATGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006950 GO:0006970 GO:0008150 GO:0008324 GO:0009628 GO:0009651 GO:0015075 GO:0015077 GO:0015081 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0035725 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TrkH

Protein Analysis

430

Amino Acids

48.32

Weight (kDa)

9.46

Isoelectric Point (pI)

44.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TrkH	PF02386	216 - 430	1.9e-26	Cation transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10310
fragaria_vesca	FvH4_4g06400 FvH4_4g06412 FvH4_4g06420 FvH4_4g06420 FvH4_4g06420 FvH4_4g06420
malus_domestica	MD16G1240400.v1.1
prunus_persica	Prupe.1G066800_v2.0.a1 Prupe.1G067100_v2.0.a1
pyrus_communis	pycom16g20110
rosa_chinensis	RchiOBHm_Chr4g0398141 RchiOBHm_Chr4g0398151
rosa_laevigata	RLG00000009382 RLG00000009383 RLG00000035139
rosa_multiflora	Rmu_sc0002035.1_g000011 Rmu_sc0002378.1_g000014 Rmu_sc0002378.1_g000025 Rmu_sc0008195.1_g000011 Rmu_sc0023295.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023290 Rroxscaffold_5G00343040 Rroxscaffold_5G00343070
rosa_rugosa	Rorug04G0006300 Rorug04G0006600 Rorug05G0304200
rosa_samantha	Rh4AG083400 Rh4AG083500 Rh4BG081100 Rh4BG081300 Rh4CG090400 Rh4CG090600 Rh4DG076000 Rh4DG076300 Rh5BG384700 Rh5DG398100
rosa_wichuraiana	Rw4G006930 Rw4G006940 Rw5G035170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1140
AccII	CGCG	1 cut(s)	830
AciI	CCGC	4 cut(s)	103, 383, 828, 830
AclI	AACGTT	1 cut(s)	39
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	4 cut(s)	443, 512, 1181, 1210
AcyI	GRCGYC	1 cut(s)	1190
AfaI	GTAC	3 cut(s)	668, 752, 783
AfiI	CCNNNNNNNGG	2 cut(s)	1140, 1160
AgsI	TTSAA	6 cut(s)	345, 419, 518, 803, 1024, 1202
AjnI	CCWGG	3 cut(s)	5, 207, 1214
AleI	CACNNNNGTG	1 cut(s)	290
AluBI	AGCT	2 cut(s)	480, 1117
AluI	AGCT	2 cut(s)	480, 1117
Alw26I	GTCTC	2 cut(s)	205, 678
AoxI	GGCC	6 cut(s)	3, 8, 260, 492, 558, 687
ApoI	RAATTY	4 cut(s)	443, 512, 1181, 1210
AspS9I	GGNCC	1 cut(s)	261
AsuHPI	GGTGA	3 cut(s)	817, 1219, 1238
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	2 cut(s)	288, 1058
BccI	CCATC	2 cut(s)	1154, 1256
BciT130I	CCWGG	3 cut(s)	7, 209, 1216
BclI	TGATCA	1 cut(s)	879
BcoDI	GTCTC	2 cut(s)	205, 678
BfaI	CTAG	2 cut(s)	246, 713
BfmI	CTRYAG	1 cut(s)	324
BmcAI	AGTACT	1 cut(s)	783
Bme1390I	CCNGG	3 cut(s)	7, 209, 1216
BmgT120I	GGNCC	1 cut(s)	261
BmiI	GGNNCC	1 cut(s)	733
BmrFI	CCNGG	3 cut(s)	7, 209, 1216
BmsI	GCATC	2 cut(s)	108, 366
BpiI	GAAGAC	2 cut(s)	288, 1058
BsaHI	GRCGYC	1 cut(s)	1190
BsaI	GGTCTC	1 cut(s)	205
BsaJI	CCNNGG	5 cut(s)	208, 264, 828, 1134, 1155
Bsc4I	CCNNNNNNNGG	2 cut(s)	1140, 1160
Bse1I	ACTGG	1 cut(s)	735
BseBI	CCWGG	3 cut(s)	7, 209, 1216
BseDI	CCNNGG	5 cut(s)	208, 264, 828, 1134, 1155
BseGI	GGATG	2 cut(s)	99, 1165
BseLI	CCNNNNNNNGG	2 cut(s)	1140, 1160
BseMII	CTCAG	2 cut(s)	490, 1157
BseNI	ACTGG	1 cut(s)	735
Bsh1236I	CGCG	1 cut(s)	830
Bsh1285I	CGRYCG	2 cut(s)	505, 571
BshFI	GGCC	6 cut(s)	5, 10, 262, 494, 560, 689
BsiEI	CGRYCG	2 cut(s)	505, 571
BslFI	GGGAC	1 cut(s)	845
BslI	CCNNNNNNNGG	2 cut(s)	1140, 1160
BsmAI	GTCTC	2 cut(s)	205, 678
BsmFI	GGGAC	1 cut(s)	845
BsmI	GAATGC	1 cut(s)	81
BsnI	GGCC	6 cut(s)	5, 10, 262, 494, 560, 689
Bso31I	GGTCTC	1 cut(s)	205
Bsp1407I	TGTACA	1 cut(s)	750
Bsp143I	GATC	4 cut(s)	502, 568, 879, 1240
Bsp19I	CCATGG	2 cut(s)	1134, 1155
BspACI	CCGC	4 cut(s)	103, 383, 828, 830
BspANI	GGCC	6 cut(s)	5, 10, 262, 494, 560, 689
BspCNI	CTCAG	2 cut(s)	489, 1158
BspFNI	CGCG	1 cut(s)	830
BspHI	TCATGA	1 cut(s)	448
BspLI	GGNNCC	1 cut(s)	733
BspQI	GCTCTTC	1 cut(s)	487
BspTNI	GGTCTC	1 cut(s)	205
BsrGI	TGTACA	1 cut(s)	750
BsrI	ACTGG	1 cut(s)	735
BssECI	CCNNGG	5 cut(s)	208, 264, 828, 1134, 1155
BssMI	GATC	4 cut(s)	502, 568, 879, 1240
BssNI	GRCGYC	1 cut(s)	1190
BssT1I	CCWWGG	3 cut(s)	264, 1134, 1155
Bst2UI	CCWGG	3 cut(s)	7, 209, 1216
Bst4CI	ACNGT	8 cut(s)	138, 307, 325, 603, 851, 1049, 1093, 1207
Bst6I	CTCTTC	3 cut(s)	487, 553, 1080
BstACI	GRCGYC	1 cut(s)	1190
BstAPI	GCANNNNNTGC	1 cut(s)	78
BstAUI	TGTACA	1 cut(s)	750
BstC8I	GCNNGC	3 cut(s)	313, 381, 1221
BstDEI	CTNAG	3 cut(s)	476, 677, 1166
BstDSI	CCRYGG	3 cut(s)	828, 1134, 1155
BstEII	GGTNACC	1 cut(s)	589
BstF5I	GGATG	2 cut(s)	99, 1165
BstFNI	CGCG	1 cut(s)	830
BstKTI	GATC	4 cut(s)	505, 571, 882, 1243
BstMAI	GTCTC	2 cut(s)	205, 678
BstMBI	GATC	4 cut(s)	502, 568, 879, 1240
BstMCI	CGRYCG	2 cut(s)	505, 571
BstMWI	GCNNNNNNNGC	1 cut(s)	78
BstNI	CCWGG	3 cut(s)	7, 209, 1216
BstNSI	RCATGY	2 cut(s)	319, 1223
BstPI	GGTNACC	1 cut(s)	589
BstSCI	CCNGG	3 cut(s)	5, 207, 1214
BstSFI	CTRYAG	1 cut(s)	324
BstUI	CGCG	1 cut(s)	830
BstV2I	GAAGAC	2 cut(s)	288, 1058
BstXI	CCANNNNNNTGG	1 cut(s)	1096
BsuRI	GGCC	6 cut(s)	5, 10, 262, 494, 560, 689
BtgI	CCRYGG	3 cut(s)	828, 1134, 1155
BtsCI	GGATG	2 cut(s)	99, 1165
BtsIMutI	CAGTG	2 cut(s)	134, 1089
Cac8I	GCNNGC	3 cut(s)	313, 381, 1221
CciI	TCATGA	1 cut(s)	448
Cfr13I	GGNCC	1 cut(s)	261
Cfr42I	CCGCGG	1 cut(s)	831
CseI	GACGC	1 cut(s)	1179
Csp6I	GTAC	3 cut(s)	667, 751, 782
CspCI	CAANNNNNGTGG	2 cut(s)	984, 1019
CviAII	CATG	6 cut(s)	78, 316, 449, 1135, 1156, 1220
CviQI	GTAC	3 cut(s)	667, 751, 782
DdeI	CTNAG	3 cut(s)	476, 677, 1166
DpnI	GATC	4 cut(s)	504, 570, 881, 1242
DpnII	GATC	4 cut(s)	502, 568, 879, 1240
DraI	TTTAAA	2 cut(s)	162, 642
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	487, 553, 1080
EarI	CTCTTC	3 cut(s)	487, 553, 1080
EciI	GGCGGA	1 cut(s)	92
Eco130I	CCWWGG	3 cut(s)	264, 1134, 1155
Eco147I	AGGCCT	2 cut(s)	494, 560
Eco31I	GGTCTC	1 cut(s)	205
Eco32I	GATATC	1 cut(s)	661
Eco91I	GGTNACC	1 cut(s)	589
EcoO65I	GGTNACC	1 cut(s)	589
EcoRI	GAATTC	1 cut(s)	1210
EcoRII	CCWGG	3 cut(s)	5, 207, 1214
EcoRV	GATATC	1 cut(s)	661
EcoT14I	CCWWGG	3 cut(s)	264, 1134, 1155
EcoT22I	ATGCAT	1 cut(s)	83
ErhI	CCWWGG	3 cut(s)	264, 1134, 1155
FaeI	CATG	6 cut(s)	81, 319, 452, 1138, 1159, 1223
FalI	AAGNNNNNCTT	4 cut(s)	482, 514, 548, 580
FaqI	GGGAC	1 cut(s)	845
FatI	CATG	6 cut(s)	77, 315, 448, 1134, 1155, 1219
FauI	CCCGC	1 cut(s)	376
FauNDI	CATATG	1 cut(s)	1053
FbaI	TGATCA	1 cut(s)	879
FokI	GGATG	2 cut(s)	86, 1172
FspBI	CTAG	2 cut(s)	246, 713
HaeIII	GGCC	6 cut(s)	5, 10, 262, 494, 560, 689
HgaI	GACGC	1 cut(s)	1179
Hin1I	GRCGYC	1 cut(s)	1190
Hin1II	CATG	6 cut(s)	81, 319, 452, 1138, 1159, 1223
HincII	GTYRAC	1 cut(s)	321
HindII	GTYRAC	1 cut(s)	321
HinfI	GANTC	2 cut(s)	1027, 1229
HphI	GGTGA	3 cut(s)	817, 1219, 1238
Hpy166II	GTNNAC	2 cut(s)	134, 321
Hpy188I	TCNGA	4 cut(s)	26, 1150, 1167, 1179
Hpy188III	TCNNGA	4 cut(s)	449, 518, 889, 1282
Hpy8I	GTNNAC	2 cut(s)	134, 321
HpyAV	CCTTC	4 cut(s)	163, 508, 574, 941
HpyCH4III	ACNGT	8 cut(s)	138, 307, 325, 603, 851, 1049, 1093, 1207
HpyCH4IV	ACGT	2 cut(s)	39, 189
HpyCH4V	TGCA	6 cut(s)	81, 99, 425, 773, 845, 1262
HpyF10VI	GCNNNNNNNGC	1 cut(s)	78
HpyF3I	CTNAG	3 cut(s)	476, 677, 1166
HpySE526I	ACGT	2 cut(s)	39, 189
Hsp92I	GRCGYC	1 cut(s)	1190
Hsp92II	CATG	6 cut(s)	81, 319, 452, 1138, 1159, 1223
Ksp22I	TGATCA	1 cut(s)	879
KspI	CCGCGG	1 cut(s)	831
Kzo9I	GATC	4 cut(s)	502, 568, 879, 1240
LguI	GCTCTTC	1 cut(s)	487
LweI	GCATC	2 cut(s)	108, 366
MaeI	CTAG	2 cut(s)	246, 713
MaeII	ACGT	2 cut(s)	39, 189
MaeIII	GTNAC	4 cut(s)	229, 589, 1013, 1043
MalI	GATC	4 cut(s)	504, 570, 881, 1242
MboI	GATC	4 cut(s)	502, 568, 879, 1240
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	7 cut(s)	61, 219, 328, 385, 505, 571, 993
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	161, 194, 641
MslI	CAYNNNNRTG	5 cut(s)	290, 362, 374, 726, 1224
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	830, 1117
MspR9I	CCNGG	3 cut(s)	7, 209, 1216
Mva1269I	GAATGC	1 cut(s)	81
MvaI	CCWGG	3 cut(s)	7, 209, 1216
MvnI	CGCG	1 cut(s)	830
MwoI	GCNNNNNNNGC	1 cut(s)	78
NcoI	CCATGG	2 cut(s)	1134, 1155
NdeI	CATATG	1 cut(s)	1053
NdeII	GATC	4 cut(s)	502, 568, 879, 1240
NlaIII	CATG	6 cut(s)	81, 319, 452, 1138, 1159, 1223
NlaIV	GGNNCC	1 cut(s)	733
NmuCI	GTSAC	1 cut(s)	229
NsiI	ATGCAT	1 cut(s)	83
NspI	RCATGY	2 cut(s)	319, 1223
OliI	CACNNNNGTG	1 cut(s)	290
PaeI	GCATGC	1 cut(s)	1223
PagI	TCATGA	1 cut(s)	448
PceI	AGGCCT	2 cut(s)	494, 560
PciSI	GCTCTTC	1 cut(s)	487
PctI	GAATGC	1 cut(s)	81
PfeI	GAWTC	2 cut(s)	1027, 1229
PflMI	CCANNNNNTGG	1 cut(s)	1140
Ple19I	CGATCG	2 cut(s)	505, 571
Psp1406I	AACGTT	1 cut(s)	39
Psp6I	CCWGG	3 cut(s)	5, 207, 1214
PspEI	GGTNACC	1 cut(s)	589
PspGI	CCWGG	3 cut(s)	5, 207, 1214
PspN4I	GGNNCC	1 cut(s)	733
PspPI	GGNCC	1 cut(s)	261
PvuI	CGATCG	2 cut(s)	505, 571
PvuII	CAGCTG	1 cut(s)	1117
RsaI	GTAC	3 cut(s)	668, 752, 783
RsaNI	GTAC	3 cut(s)	667, 751, 782
RseI	CAYNNNNRTG	5 cut(s)	290, 362, 374, 726, 1224
SacII	CCGCGG	1 cut(s)	831
SapI	GCTCTTC	1 cut(s)	487
SaqAI	TTAA	3 cut(s)	161, 194, 641
Sau3AI	GATC	4 cut(s)	502, 568, 879, 1240
Sau96I	GGNCC	1 cut(s)	261
ScaI	AGTACT	1 cut(s)	783
ScrFI	CCNGG	3 cut(s)	7, 209, 1216
SfaNI	GCATC	2 cut(s)	108, 366
SfcI	CTRYAG	1 cut(s)	324
Sfr303I	CCGCGG	1 cut(s)	831
SgrBI	CCGCGG	1 cut(s)	831
SmiMI	CAYNNNNRTG	5 cut(s)	290, 362, 374, 726, 1224
SphI	GCATGC	1 cut(s)	1223
SseBI	AGGCCT	2 cut(s)	494, 560
SsiI	CCGC	4 cut(s)	103, 383, 828, 830
SspMI	CTAG	2 cut(s)	246, 713
StuI	AGGCCT	2 cut(s)	494, 560
StyD4I	CCNGG	3 cut(s)	5, 207, 1214
StyI	CCWWGG	3 cut(s)	264, 1134, 1155
TaaI	ACNGT	8 cut(s)	138, 307, 325, 603, 851, 1049, 1093, 1207
TaiI	ACGT	2 cut(s)	42, 192
TaqI	TCGA	6 cut(s)	177, 501, 505, 567, 571, 964
TatI	WGTACW	3 cut(s)	666, 750, 781
TfiI	GAWTC	2 cut(s)	1027, 1229
Tru1I	TTAA	3 cut(s)	161, 194, 641
Tru9I	TTAA	3 cut(s)	161, 194, 641
TscAI	CASTG	2 cut(s)	141, 1096
TseFI	GTSAC	1 cut(s)	229
Tsp45I	GTSAC	1 cut(s)	229
TspRI	CASTG	2 cut(s)	141, 1096
Van91I	CCANNNNNTGG	1 cut(s)	1140
XapI	RAATTY	4 cut(s)	443, 512, 1181, 1210
XceI	RCATGY	2 cut(s)	319, 1223
XcmI	CCANNNNNNNNNTGG	2 cut(s)	376, 932
XspI	CTAG	2 cut(s)	246, 713
ZrmI	AGTACT	1 cut(s)	783
Zsp2I	ATGCAT	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.