Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002671

Physical Location & Seq

Genomic Coordinates Reverse (-)

5703351 .. 5705944

Gene Structure 2594 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g06420.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1605 bp

ATGGAGAGCATTTCATGCATTCCCAAACTCCCTTCTTATTACCTCCGCCAATCTTCTTGTAGAGGTCTTATTTGTTCACTGTTTCGTTTCCTACTGATCTTCCTCTTCAACCCTTTCATTTTTGAACTTGGTTACTTTTTAATGATCTCTTTCTTGGGTTATTTGGCTTTGATGGTCACAAAACCAGGAACTAGAACTTCCTTTAGACCCAAGGACTTTGATTTGTTCTTCACATCTGTGTCTTCTGCAACAGTATCAAGCATGTCAACTGTAGAAATGGAGGTCTTTTCAAACACCCAACTCATCATTATGACAATTTTGATGCTTTTGGGTGGAGAGATTTTCACTTCCATGCTTGGACTTCATATTGCGAAGTCCAAGATTGCCAAATTTCATGATAACAAAGTTGATGTGGAACTCAACTCTTCTAATAACAACTTCTCTGATCGAATTGAGTTAGGTGTGGTCACCCTTTCACAGTCAGAGAGTGAGCAGAAACCTAACATTCATAATGGTCTAAAAACTTTTGAAAAGAATAGTTCTACTATCAAATACAAGTGTATTAAGTGTCTTGCCTATGTGGTTTTAGGTTATCTTCTAGTGGTTCATATAGGTGGTTCAACTTTAATTTCATTGTACATAATCCTTGTGCCTAGTGCAAGACGAGTACTCAAAAGCAAAGGCATTGAAATCCAAACCTTTGCTGTTTTCACCACAGTTTCCACCTTCGCAAACTGTGGTTTTGTCCCCACCAACGAGAATATGATCGTTTTCAAGAACAACTCTGGGCTTCTACTTCTTCTAATTCCTCTACTGCTTATCGGAAACACCTTATATCCGGTGATCCTTCGATTTACGATATGGTGTTTGGAGAAAATCACCAGGAGGATGGAGTTCAGTTACATGTTGAAGCATTATAATGAATTAGGTTATAGTCATATGTTATCTGGTCTTCATTCTGTTCTTCTACTTGTCACTGTCCTGGGGTTCATAGCAGTTCAGCTGATACTGTTTTGTGCCATGGAGTGGAAATCAGAAGCCATGGATGGTCTGAGTGGCTATCAGAAGTTTGTGGCGTCATTGTTTCAAACGGTGAATTCCAGGCATGCTGGTGAAATGGTTGTTGATCTCTCCATCATCTCTCCTGCAATCTTGGTGCTTTTTGTCTTGATGATGTATCTTCCACCGTATACTACATTTGATCCTGCAATTGGTGGTTGTCAAGAAGGTGATGCTTCAGAAAAACAAGTTGGAAATCGAAGAAAGACTTTGGTGGAGTCTCTGATATTCTCACAGCTCTCTTATTTAACTATCTTTGTCATACTCATTTGCATCACAGAGAGACAAAAGATGAAGGAAGACCCACTCAACTTCAACGTCTTGAATGTTGTCACAGAAGTAGTAAGTGCATATGGAAATGTTGGGTTTTCAACTGGCTACAGTTGCAAACGTCGACTGAATTCTGAGGGTGATTGCAAAGACGCATGGTACGGATTGGTTGGAAGATTTAGTACTGAAGGAAAGTTCATCCTCATTCTTGTCATGTTCTTTGGAAGGCTTAAGAAATTTAGTATGAAGCAGGGTAAAGCATGGAAGCTATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006950 GO:0006970 GO:0008150 GO:0008324 GO:0009628 GO:0009651 GO:0015075 GO:0015077 GO:0015081 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0035725 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TrkH

Protein Analysis

535

Amino Acids

60.09

Weight (kDa)

9.08

Isoelectric Point (pI)

39.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TrkH	PF02386	181 - 391	1.2e-22	Cation transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10310
fragaria_vesca	FvH4_4g06400 FvH4_4g06412 FvH4_4g06420 FvH4_4g06420 FvH4_4g06420 FvH4_4g06420
malus_domestica	MD16G1240400.v1.1
prunus_persica	Prupe.1G066800_v2.0.a1 Prupe.1G067100_v2.0.a1
pyrus_communis	pycom16g20110
rosa_chinensis	RchiOBHm_Chr4g0398141 RchiOBHm_Chr4g0398151
rosa_laevigata	RLG00000009382 RLG00000009383 RLG00000035139
rosa_multiflora	Rmu_sc0002035.1_g000011 Rmu_sc0002378.1_g000014 Rmu_sc0002378.1_g000025 Rmu_sc0008195.1_g000011 Rmu_sc0023295.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023290 Rroxscaffold_5G00343040 Rroxscaffold_5G00343070
rosa_rugosa	Rorug04G0006300 Rorug04G0006600 Rorug05G0304200
rosa_samantha	Rh4AG083400 Rh4AG083500 Rh4BG081100 Rh4BG081300 Rh4CG090400 Rh4CG090600 Rh4DG076000 Rh4DG076300 Rh5BG384700 Rh5DG398100
rosa_wichuraiana	Rw4G006930 Rw4G006940 Rw5G035170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	918
AccB7I	CCANNNNNTGG	1 cut(s)	1026
AccI	GTMKAC	2 cut(s)	1190, 1453
AciI	CCGC	1 cut(s)	46
AclWI	GGATC	2 cut(s)	838, 1196
AcsI	RAATTY	4 cut(s)	389, 1096, 1459, 1565
AcuI	CTGAAG	2 cut(s)	1221, 1536
AcyI	GRCGYC	1 cut(s)	1076
AfaI	GTAC	4 cut(s)	638, 669, 1490, 1513
AfiI	CCNNNNNNNGG	2 cut(s)	1026, 1211
AflII	CTTAAG	1 cut(s)	1559
AflIII	ACRYGT	1 cut(s)	903
AjnI	CCWGG	4 cut(s)	184, 881, 981, 1100
AjuI	GAANNNNNNNTTGG	2 cut(s)	1233, 1265
AleI	CACNNNNGTG	1 cut(s)	236
AluBI	AGCT	3 cut(s)	1003, 1297, 1597
AluI	AGCT	3 cut(s)	1003, 1297, 1597
Alw26I	GTCTC	2 cut(s)	1284, 1336
AlwI	GGATC	2 cut(s)	838, 1196
ApoI	RAATTY	4 cut(s)	389, 1096, 1459, 1565
AsuHPI	GGTGA	8 cut(s)	460, 703, 853, 871, 1105, 1124, 1241, 1481
BarI	GAAGNNNNNNTAC	2 cut(s)	1495, 1527
BbsI	GAAGAC	3 cut(s)	234, 944, 1365
BccI	CCATC	4 cut(s)	166, 883, 1040, 1142
BciT130I	CCWGG	4 cut(s)	186, 883, 983, 1102
BcoDI	GTCTC	2 cut(s)	1284, 1336
BfaI	CTAG	4 cut(s)	192, 599, 654, 1603
BfmI	CTRYAG	2 cut(s)	270, 1438
BfrI	CTTAAG	1 cut(s)	1559
BmcAI	AGTACT	2 cut(s)	669, 1513
Bme1390I	CCNGG	4 cut(s)	186, 883, 983, 1102
BmrFI	CCNGG	4 cut(s)	186, 883, 983, 1102
BmsI	GCATC	3 cut(s)	312, 1222, 1341
BpiI	GAAGAC	3 cut(s)	234, 944, 1365
BsaHI	GRCGYC	1 cut(s)	1076
BsaJI	CCNNGG	4 cut(s)	210, 982, 1020, 1041
BsaWI	WCCGGW	1 cut(s)	838
Bsc4I	CCNNNNNNNGG	2 cut(s)	1026, 1211
Bse1I	ACTGG	1 cut(s)	1438
BseBI	CCWGG	4 cut(s)	186, 883, 983, 1102
BseDI	CCNNGG	4 cut(s)	210, 982, 1020, 1041
BseGI	GGATG	3 cut(s)	894, 1051, 1527
BseLI	CCNNNNNNNGG	2 cut(s)	1026, 1211
BseMII	CTCAG	2 cut(s)	1043, 1455
BseNI	ACTGG	1 cut(s)	1438
BsiSI	CCGG	1 cut(s)	839
BslFI	GGGAC	1 cut(s)	731
BslI	CCNNNNNNNGG	2 cut(s)	1026, 1211
BsmAI	GTCTC	2 cut(s)	1284, 1336
BsmFI	GGGAC	1 cut(s)	731
BsmI	GAATGC	1 cut(s)	18
Bsp1407I	TGTACA	1 cut(s)	636
Bsp143I	GATC	7 cut(s)	96, 144, 445, 765, 843, 1126, 1201
Bsp19I	CCATGG	2 cut(s)	1020, 1041
BspACI	CCGC	1 cut(s)	46
BspCNI	CTCAG	2 cut(s)	1044, 1456
BspHI	TCATGA	1 cut(s)	394
BspPI	GGATC	2 cut(s)	838, 1196
BspTI	CTTAAG	1 cut(s)	1559
BsrGI	TGTACA	1 cut(s)	636
BsrI	ACTGG	1 cut(s)	1438
BssECI	CCNNGG	4 cut(s)	210, 982, 1020, 1041
BssMI	GATC	7 cut(s)	96, 144, 445, 765, 843, 1126, 1201
BssNAI	GTATAC	1 cut(s)	1191
BssNI	GRCGYC	1 cut(s)	1076
BssT1I	CCWWGG	3 cut(s)	210, 1020, 1041
Bst1107I	GTATAC	1 cut(s)	1191
Bst2UI	CCWGG	4 cut(s)	186, 883, 983, 1102
Bst6I	CTCTTC	2 cut(s)	110, 430
BstACI	GRCGYC	1 cut(s)	1076
BstAFI	CTTAAG	1 cut(s)	1559
BstAPI	GCANNNNNTGC	1 cut(s)	15
BstAUI	TGTACA	1 cut(s)	636
BstC8I	GCNNGC	1 cut(s)	1107
BstDEI	CTNAG	2 cut(s)	1052, 1464
BstDSI	CCRYGG	2 cut(s)	1020, 1041
BstEII	GGTNACC	1 cut(s)	466
BstF5I	GGATG	3 cut(s)	894, 1051, 1527
BstKTI	GATC	7 cut(s)	99, 147, 448, 768, 846, 1129, 1204
BstMAI	GTCTC	2 cut(s)	1284, 1336
BstMBI	GATC	7 cut(s)	96, 144, 445, 765, 843, 1126, 1201
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 1443
BstNI	CCWGG	4 cut(s)	186, 883, 983, 1102
BstNSI	RCATGY	3 cut(s)	265, 907, 1109
BstPI	GGTNACC	1 cut(s)	466
BstSCI	CCNGG	4 cut(s)	184, 881, 981, 1100
BstSFI	CTRYAG	2 cut(s)	270, 1438
BstV2I	GAAGAC	3 cut(s)	234, 944, 1365
BstXI	CCANNNNNNTGG	1 cut(s)	889
BstZ17I	GTATAC	1 cut(s)	1191
BtgI	CCRYGG	2 cut(s)	1020, 1041
BtsCI	GGATG	3 cut(s)	894, 1051, 1527
BtsIMutI	CAGTG	2 cut(s)	77, 975
Cac8I	GCNNGC	1 cut(s)	1107
CciI	TCATGA	1 cut(s)	394
CseI	GACGC	2 cut(s)	1065, 1490
Csp6I	GTAC	4 cut(s)	637, 668, 1489, 1512
CviJI	RGCY	9 cut(s)	167, 790, 1003, 1040, 1059, 1297, 1437, 1558, 1597
CviKI_1	RGCY	9 cut(s)	167, 790, 1003, 1040, 1059, 1297, 1437, 1558, 1597
CviQI	GTAC	4 cut(s)	637, 668, 1489, 1512
DdeI	CTNAG	2 cut(s)	1052, 1464
DpnI	GATC	7 cut(s)	98, 146, 447, 767, 845, 1128, 1203
DpnII	GATC	7 cut(s)	96, 144, 445, 765, 843, 1126, 1201
Eam1104I	CTCTTC	2 cut(s)	110, 430
EarI	CTCTTC	2 cut(s)	110, 430
EciI	GGCGGA	1 cut(s)	35
Eco130I	CCWWGG	3 cut(s)	210, 1020, 1041
Eco57I	CTGAAG	2 cut(s)	1221, 1536
Eco91I	GGTNACC	1 cut(s)	466
EcoO65I	GGTNACC	1 cut(s)	466
EcoRI	GAATTC	2 cut(s)	1096, 1459
EcoRII	CCWGG	4 cut(s)	184, 881, 981, 1100
EcoT14I	CCWWGG	3 cut(s)	210, 1020, 1041
EcoT22I	ATGCAT	1 cut(s)	20
ErhI	CCWWGG	3 cut(s)	210, 1020, 1041
FalI	AAGNNNNNCTT	2 cut(s)	1252, 1284
FaqI	GGGAC	1 cut(s)	731
FauNDI	CATATG	2 cut(s)	939, 1411
FblI	GTMKAC	2 cut(s)	1190, 1453
FokI	GGATG	3 cut(s)	901, 1058, 1514
FspBI	CTAG	4 cut(s)	192, 599, 654, 1603
HapII	CCGG	1 cut(s)	839
HgaI	GACGC	2 cut(s)	1065, 1490
Hin1I	GRCGYC	1 cut(s)	1076
HincII	GTYRAC	2 cut(s)	267, 1454
HindII	GTYRAC	2 cut(s)	267, 1454
HinfI	GANTC	1 cut(s)	1277
HpaII	CCGG	1 cut(s)	839
HphI	GGTGA	8 cut(s)	460, 703, 853, 871, 1105, 1124, 1241, 1481
Hpy166II	GTNNAC	4 cut(s)	77, 267, 1191, 1454
Hpy188I	TCNGA	9 cut(s)	445, 484, 824, 1036, 1053, 1065, 1240, 1284, 1465
Hpy188III	TCNNGA	5 cut(s)	395, 775, 1168, 1223, 1381
Hpy8I	GTNNAC	4 cut(s)	77, 267, 1191, 1454
Hpy99I	CGWCG	1 cut(s)	1455
HpyAV	CCTTC	7 cut(s)	42, 736, 857, 1220, 1348, 1511, 1548
HpyCH4IV	ACGT	2 cut(s)	1377, 1450
HpyCH4V	TGCA	9 cut(s)	18, 248, 659, 1148, 1208, 1332, 1409, 1446, 1476
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 1443
HpyF3I	CTNAG	2 cut(s)	1052, 1464
HpySE526I	ACGT	2 cut(s)	1377, 1450
Hsp92I	GRCGYC	1 cut(s)	1076
Kzo9I	GATC	7 cut(s)	96, 144, 445, 765, 843, 1126, 1201
LweI	GCATC	3 cut(s)	312, 1222, 1341
MaeI	CTAG	4 cut(s)	192, 599, 654, 1603
MaeII	ACGT	2 cut(s)	1377, 1450
MaeIII	GTNAC	6 cut(s)	131, 175, 466, 899, 973, 1390
MalI	GATC	7 cut(s)	98, 146, 447, 767, 845, 1128, 1203
MboI	GATC	7 cut(s)	96, 144, 445, 765, 843, 1126, 1201
MfeI	CAATTG	1 cut(s)	1209
MlyI	GAGTC	1 cut(s)	1286
MmeI	TCCRAC	2 cut(s)	1231, 1480
MnlI	CCTC	8 cut(s)	53, 56, 113, 274, 819, 879, 1459, 1541
Mph1103I	ATGCAT	1 cut(s)	20
MseI	TTAA	5 cut(s)	140, 564, 626, 1307, 1560
MslI	CAYNNNNRTG	6 cut(s)	236, 308, 350, 612, 918, 1110
MspA1I	CMGCKG	1 cut(s)	1003
MspCI	CTTAAG	1 cut(s)	1559
MspI	CCGG	1 cut(s)	839
MspR9I	CCNGG	4 cut(s)	186, 883, 983, 1102
MunI	CAATTG	1 cut(s)	1209
Mva1269I	GAATGC	1 cut(s)	18
MvaI	CCWGG	4 cut(s)	186, 883, 983, 1102
MwoI	GCNNNNNNNGC	2 cut(s)	15, 1443
NcoI	CCATGG	2 cut(s)	1020, 1041
NdeI	CATATG	2 cut(s)	939, 1411
NdeII	GATC	7 cut(s)	96, 144, 445, 765, 843, 1126, 1201
NmuCI	GTSAC	4 cut(s)	175, 466, 973, 1390
NsiI	ATGCAT	1 cut(s)	20
NspI	RCATGY	3 cut(s)	265, 907, 1109
OliI	CACNNNNGTG	1 cut(s)	236
PaeI	GCATGC	1 cut(s)	1109
PagI	TCATGA	1 cut(s)	394
PciI	ACATGT	1 cut(s)	903
PctI	GAATGC	1 cut(s)	18
PflMI	CCANNNNNTGG	1 cut(s)	1026
PleI	GAGTC	1 cut(s)	1285
PpsI	GAGTC	1 cut(s)	1285
PscI	ACATGT	1 cut(s)	903
PsiI	TTATAA	1 cut(s)	918
Psp6I	CCWGG	4 cut(s)	184, 881, 981, 1100
PspEI	GGTNACC	1 cut(s)	466
PspGI	CCWGG	4 cut(s)	184, 881, 981, 1100
PvuII	CAGCTG	1 cut(s)	1003
RsaI	GTAC	4 cut(s)	638, 669, 1490, 1513
RsaNI	GTAC	4 cut(s)	637, 668, 1489, 1512
RseI	CAYNNNNRTG	6 cut(s)	236, 308, 350, 612, 918, 1110
SalI	GTCGAC	1 cut(s)	1452
SaqAI	TTAA	5 cut(s)	140, 564, 626, 1307, 1560
Sau3AI	GATC	7 cut(s)	96, 144, 445, 765, 843, 1126, 1201
ScaI	AGTACT	2 cut(s)	669, 1513
SchI	GAGTC	1 cut(s)	1286
ScrFI	CCNGG	4 cut(s)	186, 883, 983, 1102
SfaNI	GCATC	3 cut(s)	312, 1222, 1341
SfcI	CTRYAG	2 cut(s)	270, 1438
SmiMI	CAYNNNNRTG	6 cut(s)	236, 308, 350, 612, 918, 1110
SmlI	CTYRAG	1 cut(s)	1559
SmoI	CTYRAG	1 cut(s)	1559
SphI	GCATGC	1 cut(s)	1109
SsiI	CCGC	1 cut(s)	46
SspMI	CTAG	4 cut(s)	192, 599, 654, 1603
StyD4I	CCNGG	4 cut(s)	184, 881, 981, 1100
StyI	CCWWGG	3 cut(s)	210, 1020, 1041
TaiI	ACGT	2 cut(s)	1380, 1453
TaqI	TCGA	4 cut(s)	448, 850, 1258, 1453
TatI	WGTACW	3 cut(s)	636, 667, 1511
Tru1I	TTAA	5 cut(s)	140, 564, 626, 1307, 1560
Tru9I	TTAA	5 cut(s)	140, 564, 626, 1307, 1560
TscAI	CASTG	2 cut(s)	84, 982
TseFI	GTSAC	4 cut(s)	175, 466, 973, 1390
Tsp45I	GTSAC	4 cut(s)	175, 466, 973, 1390
TspGWI	ACGGA	1 cut(s)	1506
TspRI	CASTG	2 cut(s)	84, 982
Van91I	CCANNNNNTGG	1 cut(s)	1026
Vha464I	CTTAAG	1 cut(s)	1559
XapI	RAATTY	4 cut(s)	389, 1096, 1459, 1565
XceI	RCATGY	3 cut(s)	265, 907, 1109
XmiI	GTMKAC	2 cut(s)	1190, 1453
XspI	CTAG	4 cut(s)	192, 599, 654, 1603
ZrmI	AGTACT	2 cut(s)	669, 1513
Zsp2I	ATGCAT	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.