Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002378.1

Orthogroup ID

OG0002671

Physical Location & Seq

Genomic Coordinates Forward (+)

112085 .. 115941

Gene Structure 3857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002378.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1563 bp

atgggaattctacttctatgctattatcaatttcttcttcttagagctaagccattctgggtggagctagtttattttgtcaccctttcctttttgggttattgggttctcaaggtattgacagttagaaccaccgactcttttacccctaggaacttagatttgttcttcacctcagtttctgccacaactgtttcgagcatgtccacagttgaaatggaggtcttctccaatggccagctcatcttaatgaccatcctaatgttcataggtggggaggtcttcacctccatggttggacttcatttcaagaagttcaagctcatgatgatgatgagcacaaaagagaagattgcttcagttaacagcgatgttagctcttcatcaagtcccgcaaaggcgattgatgagaatattgaattgggcttggcaatcaagcccgaatttcctcatgagcaaattgatataattgcagcagtagatgatcaatccttgacacttcagaattccattagccttttgggttacgttgttttagcttatcttctagtggttcatttccttggggtggctatggttttggtttatctagcatttacttcaagtgcaagaaacgtagtaaagaacaaggggataaatgttcatacattctcatttttcaccacagtttcaactttctcaagttgtggttttgttcccaccaatgaaaacatgattgtctttagcaaaaactccggtctccttttaatactcattcctcaagtccttcttgggaacacattgtatccatcttgcttgagattttcaatttggcttttgggaaaaattttcaaaaagcaaagagattcttgcaattacctgttgaagaacacaaaggaggttggatacctacacttgcttcctagtctgcactcatcactcttggtcgttacagtttttgggttcatcctggtacaacttctaccttttgcctccatggagtggagttcagaaagcttaagtggacttaattcttaccagaaaatcattggatctttgttccaaaccgtcaattcaagacataccggtgaaaccatcgtcgacctctccatcatttctcccgcaatcttggtattatttatcgtgatgatgtatcttcctccttacacttcgtttctccccgctatagaaaatcatcgatatgatctacaatctcatgatcagaggaagaaaaagagaagagtaaagctcatggataatctcatattctcacagctctcctatttgaccatatttatcattttagtctgcataacggagaggaaaagcttgaaagaagatcctctcaatttcaatgtactcaatatcgtgcttgaagtcatcagtgcttatggaaatgtaggctttacgaccggctatagttgtaaacgccagctcaaccctaacggccattgtcaggatagattgtatggattttcaggaagatggagtgacgaggggaaaatagttcttatagctgtcatgttcttcggaagactcaagaaattcaacatggatggaggtaaaggatggaagctcctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006814 GO:0008150 GO:0008324 GO:0015075 GO:0015077 GO:0015081 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0035725 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TrkH

Protein Analysis

520

Amino Acids

58.63

Weight (kDa)

9.15

Isoelectric Point (pI)

33.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10310
fragaria_vesca	FvH4_4g06400 FvH4_4g06412 FvH4_4g06420 FvH4_4g06420 FvH4_4g06420 FvH4_4g06420
malus_domestica	MD16G1240400.v1.1
prunus_persica	Prupe.1G066800_v2.0.a1 Prupe.1G067100_v2.0.a1
pyrus_communis	pycom16g20110
rosa_chinensis	RchiOBHm_Chr4g0398141 RchiOBHm_Chr4g0398151
rosa_laevigata	RLG00000009382 RLG00000009383 RLG00000035139
rosa_multiflora	Rmu_sc0002035.1_g000011 Rmu_sc0002378.1_g000014 Rmu_sc0002378.1_g000025 Rmu_sc0008195.1_g000011 Rmu_sc0023295.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023290 Rroxscaffold_5G00343040 Rroxscaffold_5G00343070
rosa_rugosa	Rorug04G0006300 Rorug04G0006600 Rorug05G0304200
rosa_samantha	Rh4AG083400 Rh4AG083500 Rh4BG081100 Rh4BG081300 Rh4CG090400 Rh4CG090600 Rh4DG076000 Rh4DG076300 Rh5BG384700 Rh5DG398100
rosa_wichuraiana	Rw4G006930 Rw4G006940 Rw5G035170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	981
AccI	GTMKAC	1 cut(s)	1080
AciI	CCGC	3 cut(s)	393, 1101, 1161
AclWI	GGATC	2 cut(s)	1039, 1313
AcoI	YGGCCR	2 cut(s)	235, 1426
AcsI	RAATTY	5 cut(s)	6, 443, 505, 825, 1523
AcuI	CTGAAG	2 cut(s)	342, 485
AfaI	GTAC	2 cut(s)	954, 1338
AfiI	CCNNNNNNNGG	3 cut(s)	568, 981, 1435
AflII	CTTAAG	1 cut(s)	997
AgeI	ACCGGT	1 cut(s)	1064
AjnI	CCWGG	1 cut(s)	948
AjuI	GAANNNNNNNTTGG	2 cut(s)	404, 436
Alw21I	GWGCWC	1 cut(s)	341
Alw26I	GTCTC	1 cut(s)	743
AlwI	GGATC	2 cut(s)	1039, 1313
AlwNI	CAGNNNCTG	1 cut(s)	182
AoxI	GGCC	2 cut(s)	235, 1426
ApeKI	GCWGC	1 cut(s)	473
ApoI	RAATTY	5 cut(s)	6, 443, 505, 825, 1523
AsiGI	ACCGGT	1 cut(s)	1064
AspA2I	CCTAGG	1 cut(s)	149
AsuHPI	GGTGA	5 cut(s)	73, 163, 277, 652, 1079
AvrII	CCTAGG	1 cut(s)	149
BalI	TGGCCA	1 cut(s)	237
BbsI	GAAGAC	3 cut(s)	217, 274, 1519
Bbv12I	GWGCWC	1 cut(s)	341
BbvI	GCAGC	1 cut(s)	485
BccI	CCATC	7 cut(s)	263, 796, 1082, 1097, 1458, 1529, 1542
BceAI	ACGGC	1 cut(s)	1441
BciT130I	CCWGG	1 cut(s)	950
BciVI	GTATCC	2 cut(s)	795, 878
BclI	TGATCA	2 cut(s)	484, 1198
BcoDI	GTCTC	1 cut(s)	743
BfaI	CTAG	5 cut(s)	68, 150, 548, 590, 903
BfmI	CTRYAG	2 cut(s)	1164, 1396
BfrI	CTTAAG	1 cut(s)	997
BfuI	GTATCC	2 cut(s)	795, 878
BisI	GCNGC	1 cut(s)	474
BlnI	CCTAGG	1 cut(s)	149
BlpI	GCTNAGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	475
Bme1390I	CCNGG	1 cut(s)	950
BmrFI	CCNGG	1 cut(s)	950
BpiI	GAAGAC	3 cut(s)	217, 274, 1519
BplI	GAGNNNNNCTC	4 cut(s)	212, 244, 1212, 1244
Bpu1102I	GCTNAGC	1 cut(s)	48
BpuEI	CTTGAG	5 cut(s)	95, 664, 744, 817, 1502
Bsa29I	ATCGAT	1 cut(s)	1177
BsaI	GGTCTC	1 cut(s)	743
BsaJI	CCNNGG	4 cut(s)	149, 291, 562, 975
BsaWI	WCCGGW	2 cut(s)	734, 1064
Bsc4I	CCNNNNNNNGG	3 cut(s)	568, 981, 1435
Bse118I	RCCGGY	2 cut(s)	1064, 1391
BseBI	CCWGG	1 cut(s)	950
BseCI	ATCGAT	1 cut(s)	1177
BseDI	CCNNGG	4 cut(s)	149, 291, 562, 975
BseGI	GGATG	4 cut(s)	255, 945, 1540, 1553
BseLI	CCNNNNNNNGG	3 cut(s)	568, 981, 1435
BseMII	CTCAG	1 cut(s)	189
BseRI	GAGGAG	1 cut(s)	1547
BseXI	GCAGC	1 cut(s)	485
BsgI	GTGCAG	1 cut(s)	893
Bsh1285I	CGRYCG	1 cut(s)	1392
BshFI	GGCC	2 cut(s)	237, 1428
BshTI	ACCGGT	1 cut(s)	1064
BshVI	ATCGAT	1 cut(s)	1177
BsiEI	CGRYCG	1 cut(s)	1392
BsiHKAI	GWGCWC	1 cut(s)	341
BsiSI	CCGG	3 cut(s)	735, 1065, 1392
BslFI	GGGAC	1 cut(s)	375
BslI	CCNNNNNNNGG	3 cut(s)	568, 981, 1435
BsmAI	GTCTC	1 cut(s)	743
BsmFI	GGGAC	1 cut(s)	375
BsnI	GGCC	2 cut(s)	237, 1428
Bso31I	GGTCTC	1 cut(s)	743
Bsp1286I	GDGCHC	1 cut(s)	341
Bsp143I	GATC	5 cut(s)	484, 1031, 1183, 1198, 1318
Bsp1720I	GCTNAGC	1 cut(s)	48
Bsp19I	CCATGG	2 cut(s)	291, 975
BspACI	CCGC	3 cut(s)	393, 1101, 1161
BspANI	GGCC	2 cut(s)	237, 1428
BspCNI	CTCAG	1 cut(s)	188
BspDI	ATCGAT	1 cut(s)	1177
BspHI	TCATGA	3 cut(s)	324, 451, 1195
BspPI	GGATC	2 cut(s)	1039, 1313
BspQI	GCTCTTC	1 cut(s)	385
BspTI	CTTAAG	1 cut(s)	997
BspTNI	GGTCTC	1 cut(s)	743
BsrFI	RCCGGY	2 cut(s)	1064, 1391
BssAI	RCCGGY	2 cut(s)	1064, 1391
BssECI	CCNNGG	4 cut(s)	149, 291, 562, 975
BssMI	GATC	5 cut(s)	484, 1031, 1183, 1198, 1318
BssT1I	CCWWGG	4 cut(s)	149, 291, 562, 975
Bst2UI	CCWGG	1 cut(s)	950
Bst4CI	ACNGT	6 cut(s)	124, 193, 211, 667, 934, 1048
Bst6I	CTCTTC	2 cut(s)	385, 1213
BstAFI	CTTAAG	1 cut(s)	997
BstC8I	GCNNGC	2 cut(s)	239, 1412
BstDEI	CTNAG	4 cut(s)	41, 48, 157, 175
BstDSI	CCRYGG	2 cut(s)	291, 975
BstF5I	GGATG	4 cut(s)	255, 945, 1540, 1553
BstKTI	GATC	5 cut(s)	487, 1034, 1186, 1201, 1321
BstMAI	GTCTC	1 cut(s)	743
BstMBI	GATC	5 cut(s)	484, 1031, 1183, 1198, 1318
BstMCI	CGRYCG	1 cut(s)	1392
BstMWI	GCNNNNNNNGC	1 cut(s)	375
BstNI	CCWGG	1 cut(s)	950
BstNSI	RCATGY	1 cut(s)	205
BstSCI	CCNGG	1 cut(s)	948
BstSFI	CTRYAG	2 cut(s)	1164, 1396
BstV1I	GCAGC	1 cut(s)	485
BstV2I	GAAGAC	3 cut(s)	217, 274, 1519
BstX2I	RGATCY	2 cut(s)	1031, 1318
BstYI	RGATCY	2 cut(s)	1031, 1318
Bsu15I	ATCGAT	1 cut(s)	1177
BsuI	GTATCC	2 cut(s)	795, 878
BsuRI	GGCC	2 cut(s)	237, 1428
BsuTUI	ATCGAT	1 cut(s)	1177
BtgI	CCRYGG	2 cut(s)	291, 975
BtgZI	GCGATG	1 cut(s)	384
BtsCI	GGATG	4 cut(s)	255, 945, 1540, 1553
BtsIMutI	CAGTG	1 cut(s)	1369
Cac8I	GCNNGC	2 cut(s)	239, 1412
CaiI	CAGNNNCTG	1 cut(s)	182
CciI	TCATGA	3 cut(s)	324, 451, 1195
Cfr10I	RCCGGY	2 cut(s)	1064, 1391
ClaI	ATCGAT	1 cut(s)	1177
Csp6I	GTAC	2 cut(s)	953, 1337
CspAI	ACCGGT	1 cut(s)	1064
CviQI	GTAC	2 cut(s)	953, 1337
DdeI	CTNAG	4 cut(s)	41, 48, 157, 175
DpnI	GATC	5 cut(s)	486, 1033, 1185, 1200, 1320
DpnII	GATC	5 cut(s)	484, 1031, 1183, 1198, 1318
EaeI	YGGCCR	2 cut(s)	235, 1426
Eam1104I	CTCTTC	2 cut(s)	385, 1213
EarI	CTCTTC	2 cut(s)	385, 1213
Eco130I	CCWWGG	4 cut(s)	149, 291, 562, 975
Eco31I	GGTCTC	1 cut(s)	743
Eco57I	CTGAAG	2 cut(s)	342, 485
EcoRI	GAATTC	2 cut(s)	6, 505
EcoRII	CCWGG	1 cut(s)	948
EcoT14I	CCWWGG	4 cut(s)	149, 291, 562, 975
ErhI	CCWWGG	4 cut(s)	149, 291, 562, 975
FalI	AAGNNNNNCTT	4 cut(s)	753, 785, 832, 864
FaqI	GGGAC	1 cut(s)	375
FauI	CCCGC	3 cut(s)	400, 1108, 1168
FbaI	TGATCA	2 cut(s)	484, 1198
FblI	GTMKAC	1 cut(s)	1080
Fnu4HI	GCNGC	1 cut(s)	474
FokI	GGATG	3 cut(s)	242, 932, 1547
Fsp4HI	GCNGC	1 cut(s)	474
FspBI	CTAG	5 cut(s)	68, 150, 548, 590, 903
GluI	GCNGC	1 cut(s)	474
HaeIII	GGCC	2 cut(s)	237, 1428
HapII	CCGG	3 cut(s)	735, 1065, 1392
HincII	GTYRAC	2 cut(s)	364, 1081
HindII	GTYRAC	2 cut(s)	364, 1081
HindIII	AAGCTT	2 cut(s)	994, 1306
HinfI	GANTC	3 cut(s)	137, 845, 1515
HpaI	GTTAAC	1 cut(s)	364
HpaII	CCGG	3 cut(s)	735, 1065, 1392
HphI	GGTGA	5 cut(s)	73, 163, 277, 652, 1079
Hpy166II	GTNNAC	5 cut(s)	207, 364, 1004, 1081, 1406
Hpy188I	TCNGA	4 cut(s)	504, 991, 1203, 1511
Hpy188III	TCNNGA	9 cut(s)	310, 325, 452, 1056, 1123, 1196, 1436, 1458, 1519
Hpy8I	GTNNAC	5 cut(s)	207, 364, 1004, 1081, 1406
Hpy99I	CGWCG	1 cut(s)	1082
HpyAV	CCTTC	1 cut(s)	776
HpyCH4III	ACNGT	6 cut(s)	124, 193, 211, 667, 934, 1048
HpyCH4IV	ACGT	2 cut(s)	528, 615
HpyCH4V	TGCA	5 cut(s)	473, 608, 852, 910, 1290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	375
HpyF3I	CTNAG	4 cut(s)	41, 48, 157, 175
HpySE526I	ACGT	2 cut(s)	528, 615
Ksp22I	TGATCA	2 cut(s)	484, 1198
KspAI	GTTAAC	1 cut(s)	364
Kzo9I	GATC	5 cut(s)	484, 1031, 1183, 1198, 1318
LguI	GCTCTTC	1 cut(s)	385
LmnI	GCTCC	2 cut(s)	64, 1560
Lsp1109I	GCAGC	1 cut(s)	485
MaeI	CTAG	5 cut(s)	68, 150, 548, 590, 903
MaeII	ACGT	2 cut(s)	528, 615
MaeIII	GTNAC	4 cut(s)	79, 524, 928, 1469
MalI	GATC	5 cut(s)	486, 1033, 1185, 1200, 1320
MboI	GATC	5 cut(s)	484, 1031, 1183, 1198, 1318
MflI	RGATCY	2 cut(s)	1031, 1318
MhlI	GDGCHC	1 cut(s)	341
MlsI	TGGCCA	1 cut(s)	237
MluNI	TGGCCA	1 cut(s)	237
MlyI	GAGTC	2 cut(s)	131, 1509
MmeI	TCCRAC	2 cut(s)	277, 862
Mox20I	TGGCCA	1 cut(s)	237
MscI	TGGCCA	1 cut(s)	237
MseI	TTAA	5 cut(s)	248, 363, 746, 998, 1008
MslI	CAYNNNNRTG	6 cut(s)	248, 260, 290, 329, 1065, 1179
Msp20I	TGGCCA	1 cut(s)	237
MspCI	CTTAAG	1 cut(s)	997
MspI	CCGG	3 cut(s)	735, 1065, 1392
MspR9I	CCNGG	1 cut(s)	950
MvaI	CCWGG	1 cut(s)	950
MwoI	GCNNNNNNNGC	1 cut(s)	375
NcoI	CCATGG	2 cut(s)	291, 975
NdeII	GATC	5 cut(s)	484, 1031, 1183, 1198, 1318
NmuCI	GTSAC	2 cut(s)	79, 1469
NspI	RCATGY	1 cut(s)	205
PagI	TCATGA	3 cut(s)	324, 451, 1195
PciSI	GCTCTTC	1 cut(s)	385
PfeI	GAWTC	1 cut(s)	845
PflMI	CCANNNNNTGG	1 cut(s)	981
PinAI	ACCGGT	1 cut(s)	1064
PkrI	GCNGC	1 cut(s)	475
PleI	GAGTC	2 cut(s)	131, 1509
PpsI	GAGTC	2 cut(s)	131, 1509
Psp6I	CCWGG	1 cut(s)	948
PspGI	CCWGG	1 cut(s)	948
PstNI	CAGNNNCTG	1 cut(s)	182
PsuI	RGATCY	2 cut(s)	1031, 1318
RsaI	GTAC	2 cut(s)	954, 1338
RsaNI	GTAC	2 cut(s)	953, 1337
RseI	CAYNNNNRTG	6 cut(s)	248, 260, 290, 329, 1065, 1179
SalI	GTCGAC	1 cut(s)	1079
SapI	GCTCTTC	1 cut(s)	385
SaqAI	TTAA	5 cut(s)	248, 363, 746, 998, 1008
SatI	GCNGC	1 cut(s)	474
Sau3AI	GATC	5 cut(s)	484, 1031, 1183, 1198, 1318
SchI	GAGTC	2 cut(s)	131, 1509
ScrFI	CCNGG	1 cut(s)	950
SduI	GDGCHC	1 cut(s)	341
SfcI	CTRYAG	2 cut(s)	1164, 1396
SmiMI	CAYNNNNRTG	6 cut(s)	248, 260, 290, 329, 1065, 1179
SmlI	CTYRAG	6 cut(s)	110, 679, 759, 796, 997, 1517
SmoI	CTYRAG	6 cut(s)	110, 679, 759, 796, 997, 1517
SsiI	CCGC	3 cut(s)	393, 1101, 1161
SspI	AATATT	1 cut(s)	415
SspMI	CTAG	5 cut(s)	68, 150, 548, 590, 903
StyD4I	CCNGG	1 cut(s)	948
StyI	CCWWGG	4 cut(s)	149, 291, 562, 975
TaaI	ACNGT	6 cut(s)	124, 193, 211, 667, 934, 1048
TaiI	ACGT	2 cut(s)	531, 618
TaqI	TCGA	3 cut(s)	197, 1080, 1177
TatI	WGTACW	1 cut(s)	1336
TfiI	GAWTC	1 cut(s)	845
Tru1I	TTAA	5 cut(s)	248, 363, 746, 998, 1008
Tru9I	TTAA	5 cut(s)	248, 363, 746, 998, 1008
TscAI	CASTG	1 cut(s)	1369
TseFI	GTSAC	2 cut(s)	79, 1469
TseI	GCWGC	1 cut(s)	473
Tsp45I	GTSAC	2 cut(s)	79, 1469
TspDTI	ATGAA	7 cut(s)	256, 293, 372, 545, 632, 720, 934
TspGWI	ACGGA	1 cut(s)	1310
TspRI	CASTG	1 cut(s)	1369
Van91I	CCANNNNNTGG	1 cut(s)	981
Vha464I	CTTAAG	1 cut(s)	997
XapI	RAATTY	5 cut(s)	6, 443, 505, 825, 1523
XceI	RCATGY	1 cut(s)	205
XcmI	CCANNNNNNNNNTGG	3 cut(s)	214, 517, 1025
XmaJI	CCTAGG	1 cut(s)	149
XmiI	GTMKAC	1 cut(s)	1080
XspI	CTAG	5 cut(s)	68, 150, 548, 590, 903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.