Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002671

Physical Location & Seq

Genomic Coordinates Reverse (-)

1110100 .. 1111833

Gene Structure 1734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0006300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGGTATCGTCCGAGGTGATCTATGCTGTCATAAGCCCCGTTTTGGGAGTCCTGCTTGTTGGGTACTTTGCAAAGGTCACGCCTATCGCTCAAGACATGCTAAAAGACTGGAAAAGTAGCAACGAGGGCATACTGGAATCTTGCAGGGAGATCAGTAAAAGCTTGGGTGACTCTAAGGTTCAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006814 GO:0008150 GO:0008324 GO:0015075 GO:0015077 GO:0015081 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0035725 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TrkH

Protein Analysis

62

Amino Acids

6.76

Weight (kDa)

6.11

Isoelectric Point (pI)

44.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10310
fragaria_vesca	FvH4_4g06400 FvH4_4g06412 FvH4_4g06420 FvH4_4g06420 FvH4_4g06420 FvH4_4g06420
malus_domestica	MD16G1240400.v1.1
prunus_persica	Prupe.1G066800_v2.0.a1 Prupe.1G067100_v2.0.a1
pyrus_communis	pycom16g20110
rosa_chinensis	RchiOBHm_Chr4g0398141 RchiOBHm_Chr4g0398151
rosa_laevigata	RLG00000009382 RLG00000009383 RLG00000035139
rosa_multiflora	Rmu_sc0002035.1_g000011 Rmu_sc0002378.1_g000014 Rmu_sc0002378.1_g000025 Rmu_sc0008195.1_g000011 Rmu_sc0023295.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023290 Rroxscaffold_5G00343040 Rroxscaffold_5G00343070
rosa_rugosa	Rorug04G0006300 Rorug04G0006600 Rorug05G0304200
rosa_samantha	Rh4AG083400 Rh4AG083500 Rh4BG081100 Rh4BG081300 Rh4CG090400 Rh4CG090600 Rh4DG076000 Rh4DG076300 Rh5BG384700 Rh5DG398100
rosa_wichuraiana	Rw4G006930 Rw4G006940 Rw5G035170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	65
AfiI	CCNNNNNNNGG	2 cut(s)	43, 44
AluBI	AGCT	1 cut(s)	162
AluI	AGCT	1 cut(s)	162
AsuHPI	GGTGA	2 cut(s)	28, 179
BpuEI	CTTGAG	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 44
Bse1I	ACTGG	2 cut(s)	113, 138
BseDI	CCNNGG	1 cut(s)	12
BseLI	CCNNNNNNNGG	2 cut(s)	43, 44
BseNI	ACTGG	2 cut(s)	113, 138
BslI	CCNNNNNNNGG	2 cut(s)	43, 44
Bsp143I	GATC	2 cut(s)	18, 150
BsrI	ACTGG	2 cut(s)	113, 138
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	2 cut(s)	18, 150
BstDEI	CTNAG	1 cut(s)	174
BstKTI	GATC	2 cut(s)	21, 153
BstMBI	GATC	2 cut(s)	18, 150
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstNSI	RCATGY	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	64
CviAII	CATG	1 cut(s)	97
CviJI	RGCY	2 cut(s)	36, 162
CviKI_1	RGCY	2 cut(s)	36, 162
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	2 cut(s)	20, 152
DpnII	GATC	2 cut(s)	18, 150
FaeI	CATG	1 cut(s)	100
FaiI	YATR	4 cut(s)	24, 32, 98, 131
FatI	CATG	1 cut(s)	96
Hin1II	CATG	1 cut(s)	100
HindIII	AAGCTT	1 cut(s)	160
HinfI	GANTC	3 cut(s)	48, 137, 170
HphI	GGTGA	2 cut(s)	28, 179
Hpy188I	TCNGA	2 cut(s)	13, 183
Hpy188III	TCNNGA	1 cut(s)	92
HpyCH4V	TGCA	2 cut(s)	71, 144
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	1 cut(s)	174
Hsp92II	CATG	1 cut(s)	100
Kzo9I	GATC	2 cut(s)	18, 150
LpnPI	CCDG	4 cut(s)	65, 94, 119, 130
MaeIII	GTNAC	2 cut(s)	76, 167
MalI	GATC	2 cut(s)	20, 152
MboI	GATC	2 cut(s)	18, 150
MlyI	GAGTC	2 cut(s)	57, 164
MnlI	CCTC	2 cut(s)	7, 118
MwoI	GCNNNNNNNGC	1 cut(s)	126
NdeII	GATC	2 cut(s)	18, 150
NlaIII	CATG	1 cut(s)	100
NmuCI	GTSAC	2 cut(s)	76, 167
NspI	RCATGY	1 cut(s)	100
PfeI	GAWTC	1 cut(s)	137
PleI	GAGTC	2 cut(s)	56, 164
PpsI	GAGTC	2 cut(s)	56, 164
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
Sau3AI	GATC	2 cut(s)	18, 150
SchI	GAGTC	2 cut(s)	57, 164
SetI	ASST	4 cut(s)	18, 78, 164, 180
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
TfiI	GAWTC	1 cut(s)	137
TseFI	GTSAC	2 cut(s)	76, 167
Tsp45I	GTSAC	2 cut(s)	76, 167
XceI	RCATGY	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.