Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023295.1

Orthogroup ID

OG0002671

Physical Location & Seq

Genomic Coordinates Reverse (-)

20997 .. 22199

Gene Structure 1203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023295.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

atgaacagctttgcttgttttggccagaaattgcaccacctttgcacttgttcatttcttagccaatccatgggatttctacttctatgctattatcgatttcttcttcttagagctaacccattctgggtggaactagtttattttgtcaccctttcctttttgggttattgggttctcaaggtattgccagttagaaccaccgactcttttacccctaggaacttagatttgttcttcacctcagtttctgccacaactgtttcgagcatgtccacagttgaaatggaggtcttctccaatggccagctcatcttaatgaccatcctaatgttcataggtggggaggtcttcacctccatggttggacttcatttcaagaagttcaagctcatgatgatgatgagcacaaaagagaagattgcttcagttaacagcgatgttagctcttcatcaagtcccgcaaaggcgattgatgagaatattgaattgggcttggcaatcaagcccgaatttcctcatgagcaaattgatataattgcagcagtagatgatcaatccttgacacttcagaattccattagccttttgggttacgttgttttagcttatcttctagtggttcatttccttggggtggctatggttttggtttatctagcatttacttcaagtgcaacaaacgtagtaaagaacaaggggataaatgttcatacattctcatttttcaccacagtttcaactttctcaagttgtggttttgttcccaccaatgaaaacatgattgtctttagcaaaaactccggtctccttttaatactcattcctcaagtccttcttgggaacacattgtatccatcttgcttgagattttcaatttggcttttgggaaaaattttcaaaaagcaaagagattcttgcaattacctgttgaagaacacaaaggaggttggatacctacacttgcttcctagtctgcactcatcactcttggtcgttacagtttttgggttcatcctggtacaacttctaccttttgcctccatggagtggagttcagaaagcttaagtggacttaattcttaccagaaaatcattggatctttgttccaaaccgtcaattcaagacataccggtgaaaccatcgtcgacctctccatcatttctcccgcaatcttggtattatttatcgtgatgatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006814 GO:0008150 GO:0008324 GO:0015075 GO:0015077 GO:0015081 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0035725 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TrkH

Protein Analysis

400

Amino Acids

44.6

Weight (kDa)

8.1

Isoelectric Point (pI)

33.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10310
fragaria_vesca	FvH4_4g06400 FvH4_4g06412 FvH4_4g06420 FvH4_4g06420 FvH4_4g06420 FvH4_4g06420
malus_domestica	MD16G1240400.v1.1
prunus_persica	Prupe.1G066800_v2.0.a1 Prupe.1G067100_v2.0.a1
pyrus_communis	pycom16g20110
rosa_chinensis	RchiOBHm_Chr4g0398141 RchiOBHm_Chr4g0398151
rosa_laevigata	RLG00000009382 RLG00000009383 RLG00000035139
rosa_multiflora	Rmu_sc0002035.1_g000011 Rmu_sc0002378.1_g000014 Rmu_sc0002378.1_g000025 Rmu_sc0008195.1_g000011 Rmu_sc0023295.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023290 Rroxscaffold_5G00343040 Rroxscaffold_5G00343070
rosa_rugosa	Rorug04G0006300 Rorug04G0006600 Rorug05G0304200
rosa_samantha	Rh4AG083400 Rh4AG083500 Rh4BG081100 Rh4BG081300 Rh4CG090400 Rh4CG090600 Rh4DG076000 Rh4DG076300 Rh5BG384700 Rh5DG398100
rosa_wichuraiana	Rw4G006930 Rw4G006940 Rw5G035170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	70, 1050
AccI	GTMKAC	1 cut(s)	1149
AciI	CCGC	2 cut(s)	462, 1170
AclWI	GGATC	1 cut(s)	1108
AcoI	YGGCCR	2 cut(s)	22, 304
AcsI	RAATTY	3 cut(s)	512, 574, 894
AcuI	CTGAAG	2 cut(s)	411, 554
AfaI	GTAC	1 cut(s)	1023
AfiI	CCNNNNNNNGG	4 cut(s)	70, 127, 637, 1050
AflII	CTTAAG	1 cut(s)	1066
AgeI	ACCGGT	1 cut(s)	1133
AhlI	ACTAGT	1 cut(s)	136
AjnI	CCWGG	1 cut(s)	1017
AjuI	GAANNNNNNNTTGG	2 cut(s)	473, 505
AluBI	AGCT	7 cut(s)	9, 116, 310, 391, 447, 608, 1065
AluI	AGCT	7 cut(s)	9, 116, 310, 391, 447, 608, 1065
Alw21I	GWGCWC	1 cut(s)	410
Alw26I	GTCTC	1 cut(s)	812
AlwI	GGATC	1 cut(s)	1108
AlwNI	CAGNNNCTG	1 cut(s)	251
AoxI	GGCC	2 cut(s)	22, 304
ApeKI	GCWGC	1 cut(s)	542
ApoI	RAATTY	3 cut(s)	512, 574, 894
AsiGI	ACCGGT	1 cut(s)	1133
AspA2I	CCTAGG	1 cut(s)	218
AsuHPI	GGTGA	5 cut(s)	142, 232, 346, 721, 1148
AvrII	CCTAGG	1 cut(s)	218
BalI	TGGCCA	2 cut(s)	24, 306
BbsI	GAAGAC	2 cut(s)	286, 343
Bbv12I	GWGCWC	1 cut(s)	410
BbvI	GCAGC	1 cut(s)	554
BccI	CCATC	4 cut(s)	332, 865, 1151, 1166
BciT130I	CCWGG	1 cut(s)	1019
BciVI	GTATCC	2 cut(s)	864, 947
BclI	TGATCA	1 cut(s)	553
BcoDI	GTCTC	1 cut(s)	812
BcuI	ACTAGT	1 cut(s)	136
BfaI	CTAG	5 cut(s)	137, 219, 617, 659, 972
BfrI	CTTAAG	1 cut(s)	1066
BfuI	GTATCC	2 cut(s)	864, 947
BisI	GCNGC	1 cut(s)	543
BlnI	CCTAGG	1 cut(s)	218
BlsI	GCNGC	1 cut(s)	544
Bme1390I	CCNGG	1 cut(s)	1019
BmrFI	CCNGG	1 cut(s)	1019
BpiI	GAAGAC	2 cut(s)	286, 343
BplI	GAGNNNNNCTC	2 cut(s)	281, 313
BpuEI	CTTGAG	4 cut(s)	164, 733, 813, 886
Bsa29I	ATCGAT	1 cut(s)	97
BsaI	GGTCTC	1 cut(s)	812
BsaJI	CCNNGG	5 cut(s)	69, 218, 360, 631, 1044
BsaWI	WCCGGW	2 cut(s)	803, 1133
Bsc4I	CCNNNNNNNGG	4 cut(s)	70, 127, 637, 1050
Bse118I	RCCGGY	1 cut(s)	1133
Bse1I	ACTGG	1 cut(s)	191
BseBI	CCWGG	1 cut(s)	1019
BseCI	ATCGAT	1 cut(s)	97
BseDI	CCNNGG	5 cut(s)	69, 218, 360, 631, 1044
BseGI	GGATG	2 cut(s)	324, 1014
BseLI	CCNNNNNNNGG	4 cut(s)	70, 127, 637, 1050
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	1 cut(s)	191
BseXI	GCAGC	1 cut(s)	554
BsgI	GTGCAG	1 cut(s)	962
BshFI	GGCC	2 cut(s)	24, 306
BshTI	ACCGGT	1 cut(s)	1133
BshVI	ATCGAT	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	410
BsiSI	CCGG	2 cut(s)	804, 1134
BslFI	GGGAC	1 cut(s)	444
BslI	CCNNNNNNNGG	4 cut(s)	70, 127, 637, 1050
BsmAI	GTCTC	1 cut(s)	812
BsmFI	GGGAC	1 cut(s)	444
BsnI	GGCC	2 cut(s)	24, 306
Bso31I	GGTCTC	1 cut(s)	812
Bsp1286I	GDGCHC	1 cut(s)	410
Bsp143I	GATC	2 cut(s)	553, 1100
Bsp19I	CCATGG	3 cut(s)	69, 360, 1044
BspACI	CCGC	2 cut(s)	462, 1170
BspANI	GGCC	2 cut(s)	24, 306
BspCNI	CTCAG	1 cut(s)	257
BspDI	ATCGAT	1 cut(s)	97
BspHI	TCATGA	2 cut(s)	393, 520
BspPI	GGATC	1 cut(s)	1108
BspQI	GCTCTTC	1 cut(s)	454
BspTI	CTTAAG	1 cut(s)	1066
BspTNI	GGTCTC	1 cut(s)	812
BsrFI	RCCGGY	1 cut(s)	1133
BsrI	ACTGG	1 cut(s)	191
BssAI	RCCGGY	1 cut(s)	1133
BssECI	CCNNGG	5 cut(s)	69, 218, 360, 631, 1044
BssMI	GATC	2 cut(s)	553, 1100
BssT1I	CCWWGG	5 cut(s)	69, 218, 360, 631, 1044
Bst2UI	CCWGG	1 cut(s)	1019
Bst4CI	ACNGT	5 cut(s)	262, 280, 736, 1003, 1117
Bst6I	CTCTTC	1 cut(s)	454
BstAFI	CTTAAG	1 cut(s)	1066
BstC8I	GCNNGC	1 cut(s)	308
BstDEI	CTNAG	4 cut(s)	59, 110, 226, 244
BstDSI	CCRYGG	3 cut(s)	69, 360, 1044
BstF5I	GGATG	2 cut(s)	324, 1014
BstKTI	GATC	2 cut(s)	556, 1103
BstMAI	GTCTC	1 cut(s)	812
BstMBI	GATC	2 cut(s)	553, 1100
BstMWI	GCNNNNNNNGC	1 cut(s)	444
BstNI	CCWGG	1 cut(s)	1019
BstNSI	RCATGY	1 cut(s)	274
BstSCI	CCNGG	1 cut(s)	1017
BstV1I	GCAGC	1 cut(s)	554
BstV2I	GAAGAC	2 cut(s)	286, 343
BstX2I	RGATCY	1 cut(s)	1100
BstYI	RGATCY	1 cut(s)	1100
Bsu15I	ATCGAT	1 cut(s)	97
BsuI	GTATCC	2 cut(s)	864, 947
BsuRI	GGCC	2 cut(s)	24, 306
BsuTUI	ATCGAT	1 cut(s)	97
BtgI	CCRYGG	3 cut(s)	69, 360, 1044
BtgZI	GCGATG	1 cut(s)	453
BtsCI	GGATG	2 cut(s)	324, 1014
Cac8I	GCNNGC	1 cut(s)	308
CaiI	CAGNNNCTG	1 cut(s)	251
CciI	TCATGA	2 cut(s)	393, 520
Cfr10I	RCCGGY	1 cut(s)	1133
ClaI	ATCGAT	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	1022
CspAI	ACCGGT	1 cut(s)	1133
CviAII	CATG	7 cut(s)	70, 271, 361, 394, 521, 781, 1045
CviQI	GTAC	1 cut(s)	1022
DdeI	CTNAG	4 cut(s)	59, 110, 226, 244
DpnI	GATC	2 cut(s)	555, 1102
DpnII	GATC	2 cut(s)	553, 1100
EaeI	YGGCCR	2 cut(s)	22, 304
Eam1104I	CTCTTC	1 cut(s)	454
EarI	CTCTTC	1 cut(s)	454
Eco130I	CCWWGG	5 cut(s)	69, 218, 360, 631, 1044
Eco31I	GGTCTC	1 cut(s)	812
Eco57I	CTGAAG	2 cut(s)	411, 554
EcoRI	GAATTC	1 cut(s)	574
EcoRII	CCWGG	1 cut(s)	1017
EcoT14I	CCWWGG	5 cut(s)	69, 218, 360, 631, 1044
ErhI	CCWWGG	5 cut(s)	69, 218, 360, 631, 1044
FaeI	CATG	7 cut(s)	73, 274, 364, 397, 524, 784, 1048
FalI	AAGNNNNNCTT	4 cut(s)	822, 854, 901, 933
FaqI	GGGAC	1 cut(s)	444
FatI	CATG	7 cut(s)	69, 270, 360, 393, 520, 780, 1044
FauI	CCCGC	2 cut(s)	469, 1177
FbaI	TGATCA	1 cut(s)	553
FblI	GTMKAC	1 cut(s)	1149
Fnu4HI	GCNGC	1 cut(s)	543
FokI	GGATG	2 cut(s)	311, 1001
Fsp4HI	GCNGC	1 cut(s)	543
FspBI	CTAG	5 cut(s)	137, 219, 617, 659, 972
GluI	GCNGC	1 cut(s)	543
HaeIII	GGCC	2 cut(s)	24, 306
HapII	CCGG	2 cut(s)	804, 1134
Hin1II	CATG	7 cut(s)	73, 274, 364, 397, 524, 784, 1048
HincII	GTYRAC	2 cut(s)	433, 1150
HindII	GTYRAC	2 cut(s)	433, 1150
HindIII	AAGCTT	1 cut(s)	1063
HinfI	GANTC	2 cut(s)	206, 914
HpaI	GTTAAC	1 cut(s)	433
HpaII	CCGG	2 cut(s)	804, 1134
HphI	GGTGA	5 cut(s)	142, 232, 346, 721, 1148
Hpy166II	GTNNAC	4 cut(s)	276, 433, 1073, 1150
Hpy188I	TCNGA	2 cut(s)	573, 1060
Hpy188III	TCNNGA	5 cut(s)	379, 394, 521, 1125, 1192
Hpy8I	GTNNAC	4 cut(s)	276, 433, 1073, 1150
Hpy99I	CGWCG	1 cut(s)	1151
HpyAV	CCTTC	1 cut(s)	845
HpyCH4III	ACNGT	5 cut(s)	262, 280, 736, 1003, 1117
HpyCH4IV	ACGT	2 cut(s)	597, 684
HpyCH4V	TGCA	6 cut(s)	34, 45, 542, 677, 921, 979
HpyF10VI	GCNNNNNNNGC	1 cut(s)	444
HpyF3I	CTNAG	4 cut(s)	59, 110, 226, 244
HpySE526I	ACGT	2 cut(s)	597, 684
Hsp92II	CATG	7 cut(s)	73, 274, 364, 397, 524, 784, 1048
Ksp22I	TGATCA	1 cut(s)	553
KspAI	GTTAAC	1 cut(s)	433
Kzo9I	GATC	2 cut(s)	553, 1100
LguI	GCTCTTC	1 cut(s)	454
Lsp1109I	GCAGC	1 cut(s)	554
MaeI	CTAG	5 cut(s)	137, 219, 617, 659, 972
MaeII	ACGT	2 cut(s)	597, 684
MaeIII	GTNAC	3 cut(s)	148, 593, 997
MalI	GATC	2 cut(s)	555, 1102
MboI	GATC	2 cut(s)	553, 1100
MboII	GAAGA	9 cut(s)	95, 98, 229, 286, 343, 430, 441, 605, 946
MflI	RGATCY	1 cut(s)	1100
MhlI	GDGCHC	1 cut(s)	410
MlsI	TGGCCA	2 cut(s)	24, 306
MluNI	TGGCCA	2 cut(s)	24, 306
MlyI	GAGTC	1 cut(s)	200
MmeI	TCCRAC	2 cut(s)	346, 931
MnlI	CCTC	9 cut(s)	253, 283, 340, 367, 528, 837, 940, 1051, 1163
Mox20I	TGGCCA	2 cut(s)	24, 306
MscI	TGGCCA	2 cut(s)	24, 306
MseI	TTAA	5 cut(s)	317, 432, 815, 1067, 1077
MslI	CAYNNNNRTG	5 cut(s)	317, 329, 359, 398, 1134
Msp20I	TGGCCA	2 cut(s)	24, 306
MspCI	CTTAAG	1 cut(s)	1066
MspI	CCGG	2 cut(s)	804, 1134
MspR9I	CCNGG	1 cut(s)	1019
MvaI	CCWGG	1 cut(s)	1019
MwoI	GCNNNNNNNGC	1 cut(s)	444
NcoI	CCATGG	3 cut(s)	69, 360, 1044
NdeII	GATC	2 cut(s)	553, 1100
NlaIII	CATG	7 cut(s)	73, 274, 364, 397, 524, 784, 1048
NmuCI	GTSAC	1 cut(s)	148
NspI	RCATGY	1 cut(s)	274
PagI	TCATGA	2 cut(s)	393, 520
PciSI	GCTCTTC	1 cut(s)	454
PfeI	GAWTC	1 cut(s)	914
PflMI	CCANNNNNTGG	2 cut(s)	70, 1050
PinAI	ACCGGT	1 cut(s)	1133
PkrI	GCNGC	1 cut(s)	544
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	1017
PspGI	CCWGG	1 cut(s)	1017
PstNI	CAGNNNCTG	1 cut(s)	251
PsuI	RGATCY	1 cut(s)	1100
RsaI	GTAC	1 cut(s)	1023
RsaNI	GTAC	1 cut(s)	1022
RseI	CAYNNNNRTG	5 cut(s)	317, 329, 359, 398, 1134
SalI	GTCGAC	1 cut(s)	1148
SapI	GCTCTTC	1 cut(s)	454
SaqAI	TTAA	5 cut(s)	317, 432, 815, 1067, 1077
SatI	GCNGC	1 cut(s)	543
Sau3AI	GATC	2 cut(s)	553, 1100
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	1 cut(s)	1019
SduI	GDGCHC	1 cut(s)	410
SmiMI	CAYNNNNRTG	5 cut(s)	317, 329, 359, 398, 1134
SmlI	CTYRAG	5 cut(s)	179, 748, 828, 865, 1066
SmoI	CTYRAG	5 cut(s)	179, 748, 828, 865, 1066
SpeI	ACTAGT	1 cut(s)	136
SsiI	CCGC	2 cut(s)	462, 1170
SspI	AATATT	1 cut(s)	484
SspMI	CTAG	5 cut(s)	137, 219, 617, 659, 972
StyD4I	CCNGG	1 cut(s)	1017
StyI	CCWWGG	5 cut(s)	69, 218, 360, 631, 1044
TaaI	ACNGT	5 cut(s)	262, 280, 736, 1003, 1117
TaiI	ACGT	2 cut(s)	600, 687
TaqI	TCGA	3 cut(s)	97, 266, 1149
TfiI	GAWTC	1 cut(s)	914
Tru1I	TTAA	5 cut(s)	317, 432, 815, 1067, 1077
Tru9I	TTAA	5 cut(s)	317, 432, 815, 1067, 1077
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	1 cut(s)	542
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	9 cut(s)	17, 42, 325, 362, 441, 614, 701, 789, 1003
Van91I	CCANNNNNTGG	2 cut(s)	70, 1050
Vha464I	CTTAAG	1 cut(s)	1066
XapI	RAATTY	3 cut(s)	512, 574, 894
XceI	RCATGY	1 cut(s)	274
XcmI	CCANNNNNNNNNTGG	3 cut(s)	283, 586, 1094
XmaJI	CCTAGG	1 cut(s)	218
XmiI	GTMKAC	1 cut(s)	1149
XspI	CTAG	5 cut(s)	137, 219, 617, 659, 972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.