Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002671

Physical Location & Seq

Genomic Coordinates Forward (+)

61515561 .. 61520433

Gene Structure 4873 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035139

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGACCATTTTGATGCTGGTGGGTGGAGAGGTTTTCACTTCCATGCTTGGACTTCAAATTGCTAGGTCCAAGATTCCCAAATGTCATGATAACAAAGTTGATGTAGAACTCAACTCTTCTAACGAGACCTCCATCGATCGAATTGAGTTAGGGTTGGTCACCCTTTCACAATTAGAGAGTGAGAAGAAAACTTACATTCATAATGGTGTAAAAACCTTTGACAAGGGTAGTACTAATATCAAGAACAAGTCTATAAGGTGTCTGGCCTATGTAGTTTTAGTTTATCTTCTAGTGGTTCATATAGGTGGTTCCAGTTTAATTTCATTGTACATAATCCTTGTTCCAAGTGCAAGACAAGTACTCAAAAACAAAGGCATTGAAACCCAAACCTTTGCTGTTTTCACCACAGTTTCCACCTTCGCAAACGCTGGTTTCGTCCCCACGAACGAGAATATGATCGTTTTCAAGAACAATTCTGGGCTTCAACTTCTTCTAATTCCTCTAGTTCTCCTAGGAAACACCTTATATCCGGTGATCCTTCGATTTCTGATATGGGTTTTGGTGAAAATAACCAAGAGGGTGGAGTTCAGTTACATGTTGAAGAACTATAATGAATTGGGTTACAGTCATATGCTATCTGGTCTTCATTCTGTTCTTCTACTTGTCACTGTCTTGGGGTTCATAGCAGTTCAGCTGATACTATTTTGTGCCATGGAGTGGAAATCCGAAGCCATGTATGGTCTTAGTGGCTATCAGAAATTTGTGGCGTCATTGTTTCAAACTGTGAATTCCAGGCATGCTGGTGAGTCGGTTGTTGATCTCTCCATCATCTCTCCAGCAATCTTGGTGCTATTTGTCTCGATGATGTATCTTCCACCGTATACTGCATTTGGTCCAGCAATTAATGGTGGTTGTCAACAAGGTGATACTTCAGAAAAAGAAGATATTCGAAATCCGAGAAAGACTTTGATGGAGTCTCTGATATTCTCACAGCTCTCTTATTTAACCATATTTGTCATACTCATTTGCATCACAGAGAGACAAAAGATGAAGGAAGACCCCCTCAACTTCAATGTGTTGAATGTTGTAGTAGAAGTGATAAGTGCATATGGAAATGTTGGGTTTTCGACTGGCTACAGTTGTAAACGTCGACTGAATTCTGAGGGTGATTGTAAAGATGCATGCTACGGATTGGTTGGAAGGTTTAGTACAGAAGGAAAGTTCATCCTCATTCTTGTCATGTTCTTTGGGAGGCTAAAGAAATTCAGTATAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006950 GO:0006970 GO:0008150 GO:0008324 GO:0009628 GO:0009651 GO:0015075 GO:0015077 GO:0015081 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0035725 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TrkH

Protein Analysis

426

Amino Acids

47.37

Weight (kDa)

9.08

Isoelectric Point (pI)

36.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TrkH	PF02386	80 - 423	2.4e-34	Cation transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10310
fragaria_vesca	FvH4_4g06400 FvH4_4g06412 FvH4_4g06420 FvH4_4g06420 FvH4_4g06420 FvH4_4g06420
malus_domestica	MD16G1240400.v1.1
prunus_persica	Prupe.1G066800_v2.0.a1 Prupe.1G067100_v2.0.a1
pyrus_communis	pycom16g20110
rosa_chinensis	RchiOBHm_Chr4g0398141 RchiOBHm_Chr4g0398151
rosa_laevigata	RLG00000009382 RLG00000009383 RLG00000035139
rosa_multiflora	Rmu_sc0002035.1_g000011 Rmu_sc0002378.1_g000014 Rmu_sc0002378.1_g000025 Rmu_sc0008195.1_g000011 Rmu_sc0023295.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023290 Rroxscaffold_5G00343040 Rroxscaffold_5G00343070
rosa_rugosa	Rorug04G0006300 Rorug04G0006600 Rorug05G0304200
rosa_samantha	Rh4AG083400 Rh4AG083500 Rh4BG081100 Rh4BG081300 Rh4CG090400 Rh4CG090600 Rh4DG076000 Rh4DG076300 Rh5BG384700 Rh5DG398100
rosa_wichuraiana	Rw4G006930 Rw4G006940 Rw5G035170

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	717
AccI	GTMKAC	2 cut(s)	881, 1150
AclWI	GGATC	1 cut(s)	529
AcsI	RAATTY	4 cut(s)	758, 787, 1156, 1262
AcuI	CTGAAG	1 cut(s)	915
AcyI	GRCGYC	1 cut(s)	767
AfaI	GTAC	4 cut(s)	232, 329, 360, 1210
AfiI	CCNNNNNNNGG	1 cut(s)	717
AflIII	ACRYGT	1 cut(s)	594
AgsI	TTSAA	8 cut(s)	56, 380, 466, 485, 601, 779, 1072, 1081
AjnI	CCWGG	1 cut(s)	791
AluBI	AGCT	2 cut(s)	694, 994
AluI	AGCT	2 cut(s)	694, 994
Alw26I	GTCTC	4 cut(s)	119, 862, 981, 1033
AlwI	GGATC	1 cut(s)	529
AoxI	GGCC	1 cut(s)	264
ApoI	RAATTY	4 cut(s)	758, 787, 1156, 1262
AseI	ATTAAT	1 cut(s)	903
Asp700I	GAANNNNTTC	1 cut(s)	945
AspA2I	CCTAGG	1 cut(s)	511
AspS9I	GGNCC	2 cut(s)	66, 893
AsuHPI	GGTGA	7 cut(s)	151, 394, 544, 574, 815, 935, 1178
AsuII	TTCGAA	1 cut(s)	949
AvaII	GGWCC	2 cut(s)	66, 893
AvrII	CCTAGG	1 cut(s)	511
BarI	GAAGNNNNNNTAC	4 cut(s)	176, 208, 1192, 1224
BbsI	GAAGAC	2 cut(s)	635, 1062
BccI	CCATC	3 cut(s)	140, 833, 964
BciT130I	CCWGG	1 cut(s)	793
BcoDI	GTCTC	4 cut(s)	119, 862, 981, 1033
BfaI	CTAG	4 cut(s)	63, 290, 503, 512
BfmI	CTRYAG	1 cut(s)	1135
BlnI	CCTAGG	1 cut(s)	511
BmcAI	AGTACT	2 cut(s)	232, 360
Bme1390I	CCNGG	1 cut(s)	793
Bme18I	GGWCC	2 cut(s)	66, 893
BmgT120I	GGNCC	2 cut(s)	66, 893
BmiI	GGNNCC	1 cut(s)	310
BmrFI	CCNGG	1 cut(s)	793
BmsI	GCATC	3 cut(s)	3, 1038, 1168
BpiI	GAAGAC	2 cut(s)	635, 1062
BpmI	CTGGAG	1 cut(s)	819
Bpu14I	TTCGAA	1 cut(s)	949
Bsa29I	ATCGAT	1 cut(s)	135
BsaHI	GRCGYC	1 cut(s)	767
BsaI	GGTCTC	1 cut(s)	119
BsaJI	CCNNGG	2 cut(s)	511, 711
BsaWI	WCCGGW	1 cut(s)	529
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	1 cut(s)	717
Bse1I	ACTGG	2 cut(s)	312, 1135
BseBI	CCWGG	1 cut(s)	793
BseCI	ATCGAT	1 cut(s)	135
BseDI	CCNNGG	2 cut(s)	511, 711
BseGI	GGATG	1 cut(s)	1224
BseLI	CCNNNNNNNGG	1 cut(s)	717
BseMII	CTCAG	1 cut(s)	1152
BseNI	ACTGG	2 cut(s)	312, 1135
Bsh1285I	CGRYCG	1 cut(s)	139
BshFI	GGCC	1 cut(s)	266
BshVI	ATCGAT	1 cut(s)	135
BsiEI	CGRYCG	1 cut(s)	139
BsiSI	CCGG	1 cut(s)	530
BslFI	GGGAC	1 cut(s)	422
BslI	CCNNNNNNNGG	1 cut(s)	717
BsmAI	GTCTC	4 cut(s)	119, 862, 981, 1033
BsmFI	GGGAC	1 cut(s)	422
BsnI	GGCC	1 cut(s)	266
Bso31I	GGTCTC	1 cut(s)	119
Bsp119I	TTCGAA	1 cut(s)	949
Bsp1407I	TGTACA	1 cut(s)	327
Bsp143I	GATC	4 cut(s)	136, 456, 534, 817
Bsp19I	CCATGG	1 cut(s)	711
BspANI	GGCC	1 cut(s)	266
BspCNI	CTCAG	1 cut(s)	1153
BspDI	ATCGAT	1 cut(s)	135
BspHI	TCATGA	1 cut(s)	85
BspLI	GGNNCC	1 cut(s)	310
BspPI	GGATC	1 cut(s)	529
BspT104I	TTCGAA	1 cut(s)	949
BspTNI	GGTCTC	1 cut(s)	119
BsrGI	TGTACA	1 cut(s)	327
BsrI	ACTGG	2 cut(s)	312, 1135
BssECI	CCNNGG	2 cut(s)	511, 711
BssMI	GATC	4 cut(s)	136, 456, 534, 817
BssNAI	GTATAC	1 cut(s)	882
BssNI	GRCGYC	1 cut(s)	767
BssT1I	CCWWGG	2 cut(s)	511, 711
Bst1107I	GTATAC	1 cut(s)	882
Bst2UI	CCWGG	1 cut(s)	793
Bst4CI	ACNGT	6 cut(s)	409, 626, 670, 784, 879, 1139
Bst6I	CTCTTC	1 cut(s)	121
BstACI	GRCGYC	1 cut(s)	767
BstAUI	TGTACA	1 cut(s)	327
BstBI	TTCGAA	1 cut(s)	949
BstC8I	GCNNGC	2 cut(s)	798, 1183
BstDEI	CTNAG	2 cut(s)	743, 1161
BstDSI	CCRYGG	1 cut(s)	711
BstEII	GGTNACC	1 cut(s)	157
BstF5I	GGATG	1 cut(s)	1224
BstKTI	GATC	4 cut(s)	139, 459, 537, 820
BstMAI	GTCTC	4 cut(s)	119, 862, 981, 1033
BstMBI	GATC	4 cut(s)	136, 456, 534, 817
BstMCI	CGRYCG	1 cut(s)	139
BstNI	CCWGG	1 cut(s)	793
BstNSI	RCATGY	3 cut(s)	598, 800, 1185
BstPI	GGTNACC	1 cut(s)	157
BstSCI	CCNGG	1 cut(s)	791
BstSFI	CTRYAG	1 cut(s)	1135
BstV2I	GAAGAC	2 cut(s)	635, 1062
BstXI	CCANNNNNNTGG	1 cut(s)	580
BstZ17I	GTATAC	1 cut(s)	882
Bsu15I	ATCGAT	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	266
BsuTUI	ATCGAT	1 cut(s)	135
BtgI	CCRYGG	1 cut(s)	711
BtsCI	GGATG	1 cut(s)	1224
BtsIMutI	CAGTG	1 cut(s)	666
Cac8I	GCNNGC	2 cut(s)	798, 1183
CciI	TCATGA	1 cut(s)	85
Cfr13I	GGNCC	2 cut(s)	66, 893
ClaI	ATCGAT	1 cut(s)	135
CseI	GACGC	1 cut(s)	756
Csp6I	GTAC	4 cut(s)	231, 328, 359, 1209
CviAII	CATG	8 cut(s)	43, 86, 595, 712, 733, 797, 1182, 1240
CviJI	RGCY	8 cut(s)	266, 481, 694, 731, 750, 994, 1134, 1255
CviKI_1	RGCY	8 cut(s)	266, 481, 694, 731, 750, 994, 1134, 1255
CviQI	GTAC	4 cut(s)	231, 328, 359, 1209
DdeI	CTNAG	2 cut(s)	743, 1161
DpnI	GATC	4 cut(s)	138, 458, 536, 819
DpnII	GATC	4 cut(s)	136, 456, 534, 817
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
Eco130I	CCWWGG	2 cut(s)	511, 711
Eco31I	GGTCTC	1 cut(s)	119
Eco47I	GGWCC	2 cut(s)	66, 893
Eco57I	CTGAAG	1 cut(s)	915
Eco91I	GGTNACC	1 cut(s)	157
EcoO65I	GGTNACC	1 cut(s)	157
EcoRI	GAATTC	2 cut(s)	787, 1156
EcoRII	CCWGG	1 cut(s)	791
EcoT14I	CCWWGG	2 cut(s)	511, 711
EcoT22I	ATGCAT	1 cut(s)	1183
ErhI	CCWWGG	2 cut(s)	511, 711
FaeI	CATG	8 cut(s)	46, 89, 598, 715, 736, 800, 1185, 1243
FaqI	GGGAC	1 cut(s)	422
FatI	CATG	8 cut(s)	42, 85, 594, 711, 732, 796, 1181, 1239
FauNDI	CATATG	2 cut(s)	630, 1108
FblI	GTMKAC	2 cut(s)	881, 1150
FokI	GGATG	1 cut(s)	1211
FspBI	CTAG	4 cut(s)	63, 290, 503, 512
GsuI	CTGGAG	1 cut(s)	819
HaeIII	GGCC	1 cut(s)	266
HapII	CCGG	1 cut(s)	530
HgaI	GACGC	1 cut(s)	756
Hin1I	GRCGYC	1 cut(s)	767
Hin1II	CATG	8 cut(s)	46, 89, 598, 715, 736, 800, 1185, 1243
HincII	GTYRAC	2 cut(s)	917, 1151
HindII	GTYRAC	2 cut(s)	917, 1151
HinfI	GANTC	3 cut(s)	73, 806, 974
HpaII	CCGG	1 cut(s)	530
HphI	GGTGA	7 cut(s)	151, 394, 544, 574, 815, 935, 1178
Hpy166II	GTNNAC	4 cut(s)	882, 917, 1145, 1151
Hpy188I	TCNGA	7 cut(s)	549, 727, 756, 934, 957, 981, 1162
Hpy188III	TCNNGA	4 cut(s)	86, 241, 466, 859
Hpy8I	GTNNAC	4 cut(s)	882, 917, 1145, 1151
Hpy99I	CGWCG	1 cut(s)	1152
HpyAV	CCTTC	5 cut(s)	427, 548, 1045, 1194, 1208
HpyCH4III	ACNGT	6 cut(s)	409, 626, 670, 784, 879, 1139
HpyCH4IV	ACGT	1 cut(s)	1147
HpyCH4V	TGCA	5 cut(s)	350, 887, 1029, 1106, 1181
HpyF3I	CTNAG	2 cut(s)	743, 1161
HpySE526I	ACGT	1 cut(s)	1147
Hsp92I	GRCGYC	1 cut(s)	767
Hsp92II	CATG	8 cut(s)	46, 89, 598, 715, 736, 800, 1185, 1243
Kzo9I	GATC	4 cut(s)	136, 456, 534, 817
LweI	GCATC	3 cut(s)	3, 1038, 1168
MaeI	CTAG	4 cut(s)	63, 290, 503, 512
MaeII	ACGT	1 cut(s)	1147
MaeIII	GTNAC	4 cut(s)	157, 590, 620, 664
MalI	GATC	4 cut(s)	138, 458, 536, 819
MboI	GATC	4 cut(s)	136, 456, 534, 817
MlyI	GAGTC	2 cut(s)	815, 983
MmeI	TCCRAC	1 cut(s)	1177
MnlI	CCTC	8 cut(s)	22, 139, 510, 570, 1073, 1156, 1238, 1245
Mph1103I	ATGCAT	1 cut(s)	1183
MroXI	GAANNNNTTC	1 cut(s)	945
MseI	TTAA	3 cut(s)	317, 903, 1004
MslI	CAYNNNNRTG	5 cut(s)	11, 41, 204, 303, 801
MspA1I	CMGCKG	1 cut(s)	694
MspI	CCGG	1 cut(s)	530
MspR9I	CCNGG	1 cut(s)	793
MvaI	CCWGG	1 cut(s)	793
NcoI	CCATGG	1 cut(s)	711
NdeI	CATATG	2 cut(s)	630, 1108
NdeII	GATC	4 cut(s)	136, 456, 534, 817
NlaIII	CATG	8 cut(s)	46, 89, 598, 715, 736, 800, 1185, 1243
NlaIV	GGNNCC	1 cut(s)	310
NmuCI	GTSAC	2 cut(s)	157, 664
NsiI	ATGCAT	1 cut(s)	1183
NspI	RCATGY	3 cut(s)	598, 800, 1185
NspV	TTCGAA	1 cut(s)	949
PaeI	GCATGC	2 cut(s)	800, 1185
PagI	TCATGA	1 cut(s)	85
PciI	ACATGT	1 cut(s)	594
PcsI	WCGNNNNNNNCGW	1 cut(s)	432
PdmI	GAANNNNTTC	1 cut(s)	945
PfeI	GAWTC	1 cut(s)	73
PflMI	CCANNNNNTGG	1 cut(s)	717
Ple19I	CGATCG	1 cut(s)	139
PleI	GAGTC	2 cut(s)	814, 982
PpsI	GAGTC	2 cut(s)	814, 982
PscI	ACATGT	1 cut(s)	594
PshBI	ATTAAT	1 cut(s)	903
Psp6I	CCWGG	1 cut(s)	791
PspEI	GGTNACC	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	791
PspN4I	GGNNCC	1 cut(s)	310
PspPI	GGNCC	2 cut(s)	66, 893
PvuI	CGATCG	1 cut(s)	139
PvuII	CAGCTG	1 cut(s)	694
RsaI	GTAC	4 cut(s)	232, 329, 360, 1210
RsaNI	GTAC	4 cut(s)	231, 328, 359, 1209
RseI	CAYNNNNRTG	5 cut(s)	11, 41, 204, 303, 801
SalI	GTCGAC	1 cut(s)	1149
SaqAI	TTAA	3 cut(s)	317, 903, 1004
Sau3AI	GATC	4 cut(s)	136, 456, 534, 817
Sau96I	GGNCC	2 cut(s)	66, 893
ScaI	AGTACT	2 cut(s)	232, 360
SchI	GAGTC	2 cut(s)	815, 983
ScrFI	CCNGG	1 cut(s)	793
SfaNI	GCATC	3 cut(s)	3, 1038, 1168
SfcI	CTRYAG	1 cut(s)	1135
SfuI	TTCGAA	1 cut(s)	949
SinI	GGWCC	2 cut(s)	66, 893
SmiMI	CAYNNNNRTG	5 cut(s)	11, 41, 204, 303, 801
SphI	GCATGC	2 cut(s)	800, 1185
SspMI	CTAG	4 cut(s)	63, 290, 503, 512
StyD4I	CCNGG	1 cut(s)	791
StyI	CCWWGG	2 cut(s)	511, 711
TaaI	ACNGT	6 cut(s)	409, 626, 670, 784, 879, 1139
TaiI	ACGT	1 cut(s)	1150
TaqI	TCGA	7 cut(s)	135, 139, 541, 860, 949, 1127, 1150
TatI	WGTACW	4 cut(s)	230, 327, 358, 1208
TfiI	GAWTC	1 cut(s)	73
Tru1I	TTAA	3 cut(s)	317, 903, 1004
Tru9I	TTAA	3 cut(s)	317, 903, 1004
TscAI	CASTG	1 cut(s)	673
TseFI	GTSAC	2 cut(s)	157, 664
Tsp45I	GTSAC	2 cut(s)	157, 664
TspDTI	ATGAA	8 cut(s)	188, 287, 312, 627, 635, 670, 1064, 1213
TspGWI	ACGGA	1 cut(s)	1203
TspRI	CASTG	1 cut(s)	673
Van91I	CCANNNNNTGG	1 cut(s)	717
VpaK11BI	GGWCC	2 cut(s)	66, 893
VspI	ATTAAT	1 cut(s)	903
XapI	RAATTY	4 cut(s)	758, 787, 1156, 1262
XceI	RCATGY	3 cut(s)	598, 800, 1185
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XmaJI	CCTAGG	1 cut(s)	511
XmiI	GTMKAC	2 cut(s)	881, 1150
XmnI	GAANNNNTTC	1 cut(s)	945
XspI	CTAG	4 cut(s)	63, 290, 503, 512
ZrmI	AGTACT	2 cut(s)	232, 360
Zsp2I	ATGCAT	1 cut(s)	1183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.