Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002671

Physical Location & Seq

Genomic Coordinates Forward (+)

60763740 .. 60766802

Gene Structure 3063 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G035170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1608 bp

ATGGACAACTTTTCTGTTCCTTGTTGGAAATTGAAGGCCATTTCATGCATTCACAAACTCCCTTGCCTCCGCCAATTTTCTTGTAGAGTTCTAATTCGTTCACCTTTTCGTTTCCTACTCTTCCTTTACAATCCTTTCATTATCGAACTTATTTACTTTTTAGTGGTCTCTCTCCTGGGTTATTTGGCTTTGAGGCTCACAAAACCAGGAACTAGAACTTCCTTTAAGCCCAAGGACTTTGATTTGTTCTTCACATCTGTCTCTTCCACTACAGTATCAAGCATGTCAACCGTAGAAATGGAGGTTTTTTCAAACACCCAACTCATCATTATGACCATTTTGATGCTGTTGGGTGGAGAGGTTTTCACTTCCATGCTTGGACTTCAAATTGCAAGGTCCAAGATTCCCAAATGTCATGATAACAAAGTTGATGTAGAACTCAACTCTTCTAATGAGACCTCCATCGATCGAATTGAGCTAGGGTTGGTCACCCTTTCACAATTAGAGAGTGGGAAGAAAACTTACATTCATAATGGTGTAAAAACCTTTGACAAGGATAGTACTACTATCAAGAACAAGTCTATTAGGTGTCTGGCCTATGTAGTTTTAGTTTATCTTCTAGTGGTTCATATAGGTGGTTCCAGTTTAATTTCATTGTACATAATCCTTGTTCCAAGTGCAAGACAAGTACTCAAAAACAAAGGCATTGAAATCCAAACCTTTGCTGTTTTCACCACAGTTTCCACCTTCGCAAACGCTGGTTTCGTCCCCACGAACGAGAATATGATCGTTTTCAAGAACAATTCTGGGCTTCAACTTCTTCTAATTCCTCTAATTCTCCTCGGAAACACCTTATATCCGGTGATCCTTCGATTTCTGATATGGGTTTTGGAGAAAATAACCAAGAGGGTGGAGTTCAGTTACATGTTGAAGAGTTATAATGACTTGGGTTACAGTCATATGCTATCTAGTCTTCATTCTGTTCTTCTACTTGTCACTGTTTTGGGGTTCATAGCAGTTCAGCTGATACTATTTTGTGCCATAGAGTGGAAATCCGAAGCCATGTATGGTCTTAGTGGCTATCAGAAATTTGTGGCGTCATTGTTTCAAACTGTGAATTCCAGGCATGCTGGTGAGTCGGTTGTTGATCTCTCCACCATCTCTCCAGCAATCTTGGTGCTGTTTGTCTCGATGATGTATCTTCCACCGTATACTACATTTGGTCCAGCAATTACTGGTGGTTGTCAACAAGGTGATACTTCAGAAAAAGAAGATATTCGAAATCCGAGAAAGACTTTGGTGGAGTCTCTGATATTCTCACAGCTCTCTTATTTAACCATATTTGTCATACTCATTTGCATCACAGAGGGACAAAAGATGAAGGAAGACCCCCTCAACTTCAATGTGTTGAATGTTGTAGTAGAAGTGATAAGTGCATATGGAAATGTTGGGTTTTCGACTGGCTACAGTTGTAAACGTCGACTGAATTCTGAGGGTGATTGTAAAGACGCATGCTACGGATTGGTTGGAAAGTTTAGTACAGAAGGAAAGTTCATCCTCATTCTCGTCATGTTCTTTGGGAGGCTAAAGAAATTCAGTACAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006950 GO:0006970 GO:0008150 GO:0008324 GO:0009628 GO:0009651 GO:0015075 GO:0015077 GO:0015081 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0035725 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TrkH

Protein Analysis

535

Amino Acids

59.93

Weight (kDa)

9.12

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TrkH	PF02386	190 - 533	2e-35	Cation transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10310
fragaria_vesca	FvH4_4g06400 FvH4_4g06412 FvH4_4g06420 FvH4_4g06420 FvH4_4g06420 FvH4_4g06420
malus_domestica	MD16G1240400.v1.1
prunus_persica	Prupe.1G066800_v2.0.a1 Prupe.1G067100_v2.0.a1
pyrus_communis	pycom16g20110
rosa_chinensis	RchiOBHm_Chr4g0398141 RchiOBHm_Chr4g0398151
rosa_laevigata	RLG00000009382 RLG00000009383 RLG00000035139
rosa_multiflora	Rmu_sc0002035.1_g000011 Rmu_sc0002378.1_g000014 Rmu_sc0002378.1_g000025 Rmu_sc0008195.1_g000011 Rmu_sc0023295.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023290 Rroxscaffold_5G00343040 Rroxscaffold_5G00343070
rosa_rugosa	Rorug04G0006300 Rorug04G0006600 Rorug05G0304200
rosa_samantha	Rh4AG083400 Rh4AG083500 Rh4BG081100 Rh4BG081300 Rh4CG090400 Rh4CG090600 Rh4DG076000 Rh4DG076300 Rh5BG384700 Rh5DG398100
rosa_wichuraiana	Rw4G006930 Rw4G006940 Rw5G035170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	939
AccB7I	CCANNNNNTGG	1 cut(s)	1047
AccI	GTMKAC	2 cut(s)	1211, 1480
AciI	CCGC	1 cut(s)	70
AclWI	GGATC	1 cut(s)	859
AcsI	RAATTY	4 cut(s)	1088, 1117, 1486, 1592
AcuI	CTGAAG	1 cut(s)	1245
AcyI	GRCGYC	1 cut(s)	1097
AfaI	GTAC	5 cut(s)	562, 659, 690, 1540, 1600
AfiI	CCNNNNNNNGG	1 cut(s)	1047
AflIII	ACRYGT	1 cut(s)	924
AjnI	CCWGG	3 cut(s)	174, 205, 1121
AluBI	AGCT	3 cut(s)	478, 1024, 1324
AluI	AGCT	3 cut(s)	478, 1024, 1324
Alw26I	GTCTC	5 cut(s)	172, 265, 449, 1192, 1311
AlwI	GGATC	1 cut(s)	859
AoxI	GGCC	2 cut(s)	36, 594
ApoI	RAATTY	4 cut(s)	1088, 1117, 1486, 1592
Asp700I	GAANNNNTTC	1 cut(s)	1275
AspS9I	GGNCC	2 cut(s)	396, 1223
AsuHPI	GGTGA	7 cut(s)	93, 481, 724, 874, 1145, 1265, 1508
AsuII	TTCGAA	1 cut(s)	1279
AvaII	GGWCC	2 cut(s)	396, 1223
BaeI	ACNNNNGTAYC	2 cut(s)	258, 291
BarI	GAAGNNNNNNTAC	2 cut(s)	506, 538
BbsI	GAAGAC	2 cut(s)	965, 1392
BccI	CCATC	2 cut(s)	470, 1166
BciT130I	CCWGG	3 cut(s)	176, 207, 1123
BcoDI	GTCTC	5 cut(s)	172, 265, 449, 1192, 1311
BfaI	CTAG	4 cut(s)	213, 479, 620, 969
BfmI	CTRYAG	2 cut(s)	270, 1465
BmcAI	AGTACT	2 cut(s)	562, 690
Bme1390I	CCNGG	3 cut(s)	176, 207, 1123
Bme18I	GGWCC	2 cut(s)	396, 1223
BmgT120I	GGNCC	2 cut(s)	396, 1223
BmiI	GGNNCC	1 cut(s)	640
BmrFI	CCNGG	3 cut(s)	176, 207, 1123
BmsI	GCATC	2 cut(s)	333, 1368
BpiI	GAAGAC	2 cut(s)	965, 1392
BpmI	CTGGAG	1 cut(s)	1149
Bpu14I	TTCGAA	1 cut(s)	1279
Bsa29I	ATCGAT	1 cut(s)	465
BsaHI	GRCGYC	1 cut(s)	1097
BsaI	GGTCTC	2 cut(s)	172, 449
BsaJI	CCNNGG	3 cut(s)	175, 231, 841
BsaWI	WCCGGW	1 cut(s)	859
BsaXI	ACNNNNNCTCC	2 cut(s)	1147, 1177
Bsc4I	CCNNNNNNNGG	1 cut(s)	1047
Bse1I	ACTGG	3 cut(s)	642, 1240, 1465
BseBI	CCWGG	3 cut(s)	176, 207, 1123
BseCI	ATCGAT	1 cut(s)	465
BseDI	CCNNGG	3 cut(s)	175, 231, 841
BseGI	GGATG	1 cut(s)	1554
BseLI	CCNNNNNNNGG	1 cut(s)	1047
BseMII	CTCAG	1 cut(s)	1482
BseNI	ACTGG	3 cut(s)	642, 1240, 1465
BseRI	GAGGAG	1 cut(s)	830
Bsh1285I	CGRYCG	1 cut(s)	469
BshFI	GGCC	2 cut(s)	38, 596
BshVI	ATCGAT	1 cut(s)	465
BsiEI	CGRYCG	1 cut(s)	469
BsiSI	CCGG	1 cut(s)	860
BslFI	GGGAC	2 cut(s)	752, 1383
BslI	CCNNNNNNNGG	1 cut(s)	1047
BsmAI	GTCTC	5 cut(s)	172, 265, 449, 1192, 1311
BsmFI	GGGAC	2 cut(s)	752, 1383
BsmI	GAATGC	1 cut(s)	48
BsnI	GGCC	2 cut(s)	38, 596
Bso31I	GGTCTC	2 cut(s)	172, 449
Bsp119I	TTCGAA	1 cut(s)	1279
Bsp1407I	TGTACA	1 cut(s)	657
Bsp143I	GATC	4 cut(s)	466, 786, 864, 1147
BspACI	CCGC	1 cut(s)	70
BspANI	GGCC	2 cut(s)	38, 596
BspCNI	CTCAG	1 cut(s)	1483
BspDI	ATCGAT	1 cut(s)	465
BspHI	TCATGA	1 cut(s)	415
BspLI	GGNNCC	1 cut(s)	640
BspPI	GGATC	1 cut(s)	859
BspT104I	TTCGAA	1 cut(s)	1279
BspTNI	GGTCTC	2 cut(s)	172, 449
BsrGI	TGTACA	1 cut(s)	657
BsrI	ACTGG	3 cut(s)	642, 1240, 1465
BssECI	CCNNGG	3 cut(s)	175, 231, 841
BssMI	GATC	4 cut(s)	466, 786, 864, 1147
BssNAI	GTATAC	1 cut(s)	1212
BssNI	GRCGYC	1 cut(s)	1097
BssT1I	CCWWGG	1 cut(s)	231
Bst1107I	GTATAC	1 cut(s)	1212
Bst2UI	CCWGG	3 cut(s)	176, 207, 1123
Bst4CI	ACNGT	8 cut(s)	274, 292, 739, 956, 1000, 1114, 1209, 1469
Bst6I	CTCTTC	4 cut(s)	125, 268, 451, 926
BstACI	GRCGYC	1 cut(s)	1097
BstAUI	TGTACA	1 cut(s)	657
BstBI	TTCGAA	1 cut(s)	1279
BstC8I	GCNNGC	2 cut(s)	1128, 1513
BstDEI	CTNAG	2 cut(s)	1073, 1491
BstEII	GGTNACC	1 cut(s)	487
BstF5I	GGATG	1 cut(s)	1554
BstKTI	GATC	4 cut(s)	469, 789, 867, 1150
BstMAI	GTCTC	5 cut(s)	172, 265, 449, 1192, 1311
BstMBI	GATC	4 cut(s)	466, 786, 864, 1147
BstMCI	CGRYCG	1 cut(s)	469
BstNI	CCWGG	3 cut(s)	176, 207, 1123
BstNSI	RCATGY	4 cut(s)	286, 928, 1130, 1515
BstPI	GGTNACC	1 cut(s)	487
BstSCI	CCNGG	3 cut(s)	174, 205, 1121
BstSFI	CTRYAG	2 cut(s)	270, 1465
BstV2I	GAAGAC	2 cut(s)	965, 1392
BstXI	CCANNNNNNTGG	1 cut(s)	910
BstZ17I	GTATAC	1 cut(s)	1212
Bsu15I	ATCGAT	1 cut(s)	465
BsuRI	GGCC	2 cut(s)	38, 596
BsuTUI	ATCGAT	1 cut(s)	465
BtsCI	GGATG	1 cut(s)	1554
BtsIMutI	CAGTG	1 cut(s)	996
Cac8I	GCNNGC	2 cut(s)	1128, 1513
CciI	TCATGA	1 cut(s)	415
Cfr13I	GGNCC	2 cut(s)	396, 1223
ClaI	ATCGAT	1 cut(s)	465
CseI	GACGC	2 cut(s)	1086, 1517
Csp6I	GTAC	5 cut(s)	561, 658, 689, 1539, 1599
CviAII	CATG	9 cut(s)	45, 283, 373, 416, 925, 1063, 1127, 1512, 1570
CviQI	GTAC	5 cut(s)	561, 658, 689, 1539, 1599
DdeI	CTNAG	2 cut(s)	1073, 1491
DpnI	GATC	4 cut(s)	468, 788, 866, 1149
DpnII	GATC	4 cut(s)	466, 786, 864, 1147
Eam1104I	CTCTTC	4 cut(s)	125, 268, 451, 926
EarI	CTCTTC	4 cut(s)	125, 268, 451, 926
EciI	GGCGGA	1 cut(s)	59
Eco130I	CCWWGG	1 cut(s)	231
Eco31I	GGTCTC	2 cut(s)	172, 449
Eco47I	GGWCC	2 cut(s)	396, 1223
Eco57I	CTGAAG	1 cut(s)	1245
Eco91I	GGTNACC	1 cut(s)	487
EcoO65I	GGTNACC	1 cut(s)	487
EcoRI	GAATTC	2 cut(s)	1117, 1486
EcoRII	CCWGG	3 cut(s)	174, 205, 1121
EcoT14I	CCWWGG	1 cut(s)	231
EcoT22I	ATGCAT	1 cut(s)	50
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	9 cut(s)	48, 286, 376, 419, 928, 1066, 1130, 1515, 1573
FaqI	GGGAC	2 cut(s)	752, 1383
FatI	CATG	9 cut(s)	44, 282, 372, 415, 924, 1062, 1126, 1511, 1569
FauNDI	CATATG	2 cut(s)	960, 1438
FblI	GTMKAC	2 cut(s)	1211, 1480
FokI	GGATG	1 cut(s)	1541
FspBI	CTAG	4 cut(s)	213, 479, 620, 969
GsuI	CTGGAG	1 cut(s)	1149
HaeIII	GGCC	2 cut(s)	38, 596
HapII	CCGG	1 cut(s)	860
HgaI	GACGC	2 cut(s)	1086, 1517
Hin1I	GRCGYC	1 cut(s)	1097
Hin1II	CATG	9 cut(s)	48, 286, 376, 419, 928, 1066, 1130, 1515, 1573
HincII	GTYRAC	3 cut(s)	288, 1247, 1481
HindII	GTYRAC	3 cut(s)	288, 1247, 1481
HinfI	GANTC	3 cut(s)	403, 1136, 1304
HpaII	CCGG	1 cut(s)	860
HphI	GGTGA	7 cut(s)	93, 481, 724, 874, 1145, 1265, 1508
Hpy166II	GTNNAC	6 cut(s)	101, 288, 1212, 1247, 1475, 1481
Hpy188I	TCNGA	8 cut(s)	845, 879, 1057, 1086, 1264, 1287, 1311, 1492
Hpy188III	TCNNGA	4 cut(s)	416, 571, 796, 1189
Hpy8I	GTNNAC	6 cut(s)	101, 288, 1212, 1247, 1475, 1481
Hpy99I	CGWCG	1 cut(s)	1482
HpyAV	CCTTC	5 cut(s)	28, 757, 878, 1375, 1538
HpyCH4III	ACNGT	8 cut(s)	274, 292, 739, 956, 1000, 1114, 1209, 1469
HpyCH4IV	ACGT	1 cut(s)	1477
HpyCH4V	TGCA	5 cut(s)	48, 392, 680, 1359, 1436
HpyF3I	CTNAG	2 cut(s)	1073, 1491
HpySE526I	ACGT	1 cut(s)	1477
Hsp92I	GRCGYC	1 cut(s)	1097
Hsp92II	CATG	9 cut(s)	48, 286, 376, 419, 928, 1066, 1130, 1515, 1573
Kzo9I	GATC	4 cut(s)	466, 786, 864, 1147
LweI	GCATC	2 cut(s)	333, 1368
MaeI	CTAG	4 cut(s)	213, 479, 620, 969
MaeII	ACGT	1 cut(s)	1477
MaeIII	GTNAC	4 cut(s)	487, 920, 950, 994
MalI	GATC	4 cut(s)	468, 788, 866, 1149
MboI	GATC	4 cut(s)	466, 786, 864, 1147
MlyI	GAGTC	2 cut(s)	1145, 1313
MmeI	TCCRAC	2 cut(s)	5, 1507
Mph1103I	ATGCAT	1 cut(s)	50
MroXI	GAANNNNTTC	1 cut(s)	1275
MseI	TTAA	3 cut(s)	225, 647, 1334
MslI	CAYNNNNRTG	6 cut(s)	329, 341, 371, 534, 633, 1131
MspA1I	CMGCKG	1 cut(s)	1024
MspI	CCGG	1 cut(s)	860
MspR9I	CCNGG	3 cut(s)	176, 207, 1123
Mva1269I	GAATGC	1 cut(s)	48
MvaI	CCWGG	3 cut(s)	176, 207, 1123
NdeI	CATATG	2 cut(s)	960, 1438
NdeII	GATC	4 cut(s)	466, 786, 864, 1147
NlaIII	CATG	9 cut(s)	48, 286, 376, 419, 928, 1066, 1130, 1515, 1573
NlaIV	GGNNCC	1 cut(s)	640
NmuCI	GTSAC	2 cut(s)	487, 994
NsiI	ATGCAT	1 cut(s)	50
NspI	RCATGY	4 cut(s)	286, 928, 1130, 1515
NspV	TTCGAA	1 cut(s)	1279
PaeI	GCATGC	2 cut(s)	1130, 1515
PagI	TCATGA	1 cut(s)	415
PciI	ACATGT	1 cut(s)	924
PcsI	WCGNNNNNNNCGW	1 cut(s)	762
PctI	GAATGC	1 cut(s)	48
PdmI	GAANNNNTTC	1 cut(s)	1275
PfeI	GAWTC	1 cut(s)	403
PflMI	CCANNNNNTGG	1 cut(s)	1047
Ple19I	CGATCG	1 cut(s)	469
PleI	GAGTC	2 cut(s)	1144, 1312
PpsI	GAGTC	2 cut(s)	1144, 1312
PscI	ACATGT	1 cut(s)	924
PsiI	TTATAA	1 cut(s)	939
Psp6I	CCWGG	3 cut(s)	174, 205, 1121
PspEI	GGTNACC	1 cut(s)	487
PspGI	CCWGG	3 cut(s)	174, 205, 1121
PspN4I	GGNNCC	1 cut(s)	640
PspPI	GGNCC	2 cut(s)	396, 1223
PvuI	CGATCG	1 cut(s)	469
PvuII	CAGCTG	1 cut(s)	1024
RsaI	GTAC	5 cut(s)	562, 659, 690, 1540, 1600
RsaNI	GTAC	5 cut(s)	561, 658, 689, 1539, 1599
RseI	CAYNNNNRTG	6 cut(s)	329, 341, 371, 534, 633, 1131
SalI	GTCGAC	1 cut(s)	1479
SaqAI	TTAA	3 cut(s)	225, 647, 1334
Sau3AI	GATC	4 cut(s)	466, 786, 864, 1147
Sau96I	GGNCC	2 cut(s)	396, 1223
ScaI	AGTACT	2 cut(s)	562, 690
SchI	GAGTC	2 cut(s)	1145, 1313
ScrFI	CCNGG	3 cut(s)	176, 207, 1123
SfaNI	GCATC	2 cut(s)	333, 1368
SfcI	CTRYAG	2 cut(s)	270, 1465
SfuI	TTCGAA	1 cut(s)	1279
SinI	GGWCC	2 cut(s)	396, 1223
SmiMI	CAYNNNNRTG	6 cut(s)	329, 341, 371, 534, 633, 1131
SphI	GCATGC	2 cut(s)	1130, 1515
SsiI	CCGC	1 cut(s)	70
SspMI	CTAG	4 cut(s)	213, 479, 620, 969
StyD4I	CCNGG	3 cut(s)	174, 205, 1121
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	8 cut(s)	274, 292, 739, 956, 1000, 1114, 1209, 1469
TaiI	ACGT	1 cut(s)	1480
TaqI	TCGA	8 cut(s)	144, 465, 469, 871, 1190, 1279, 1457, 1480
TatI	WGTACW	5 cut(s)	560, 657, 688, 1538, 1598
TfiI	GAWTC	1 cut(s)	403
Tru1I	TTAA	3 cut(s)	225, 647, 1334
Tru9I	TTAA	3 cut(s)	225, 647, 1334
TscAI	CASTG	1 cut(s)	1003
TseFI	GTSAC	2 cut(s)	487, 994
Tsp45I	GTSAC	2 cut(s)	487, 994
TspDTI	ATGAA	9 cut(s)	33, 127, 518, 617, 642, 965, 1000, 1394, 1543
TspGWI	ACGGA	1 cut(s)	1533
TspRI	CASTG	1 cut(s)	1003
Van91I	CCANNNNNTGG	1 cut(s)	1047
VpaK11BI	GGWCC	2 cut(s)	396, 1223
XapI	RAATTY	4 cut(s)	1088, 1117, 1486, 1592
XceI	RCATGY	4 cut(s)	286, 928, 1130, 1515
XmiI	GTMKAC	2 cut(s)	1211, 1480
XmnI	GAANNNNTTC	1 cut(s)	1275
XspI	CTAG	4 cut(s)	213, 479, 620, 969
ZrmI	AGTACT	2 cut(s)	562, 690
Zsp2I	ATGCAT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.