RLG00000009383

Cation transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0002671
Physical Location & Seq
Forward (+)
52013779 .. 52018048
4270 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009383

Sequence Viewer

Length: 1539 bp
ATGGGATTTCTCCTTCTTAGAGCTAAGCAATTCTGGGTGGAACTAGTTTATTTTGTCACCCTTTCCTTTTTGGGTTATTGGGTTCTCAAGGTATTGCCAGTTAGAACCACCGACTCTTTTACCCCTAGGAACTTAGATTTGTTCTTCACCTCAGTTTCTGCCACAACCGTTTCGAGCATGTCCACAGTTGAAATGGAGGTCTTCTCCAATGGCCAGCTCATCTTAATGACCATCCTAATGTTCATAGGTGGCGAGGTCTTCACCTCCATGGTTGGACTTCATTTCAAGACGTTCAAGCTCATGATGATGATGAGCACAAAAGAGAAGATTGCTTCAGTTAACAGCGATGTTAGCTCTTCATCAAGTCCCGCAAAGGCGAATGATGAGAATATTGAATTGGGCTTGGCAATCAAGCCCGAATTTCCTCATGACCAAATTGATATAATTGCAGCAGTAGATGATCAATCCTTGACACTTCAGAATTCCATTAACCTTTTGGGTTGCGTTGTTTTAGCTTATCTTGTAGTGGTTCATTTCCTTGGGGTGGCTATGGTTTTGGTTTATCTAGCATTTACTTCAAGTGCAAGAAACGTAGTAAAGAACAAGGGGATAAATGTTCATACATTCTCATTGTTCACCACAGTTTCAACTTTCTCAAGTTGTGGTTTTGTTCCCACCAATGAAAACATGATTGTCTTTAGCAAAAACTCCGGTCTCCTTCTAATACTCATTCCTCAAGTCCTTCTTGGGAACACATTGTATCCATCCTGCTTGAGATTTTCAATTTGGATTTTGGGAAAAATTTTCAAAAAGCAAAGAGATTCTTGCAATTACCTGTTGAAGAACACAAAGGAGGTTGGATACCTACACTTGCTTCCTAGTCTGCACTCATCACTCTTGGTCGTTACAGTTTTTGGGTTCATCCTGGTACAACTTCTACCTTTTGCCTCCATGGAGTGGAGTTCAGAAAGCTTAAGTGGACTTAATTCTTACCAGAAAATCATTGGATCTTTGTTCCAAACCGTCAATTCAAGACATACCGGTGAAACTATCGTCGACCTCTCCATCATTTCTCCCGCAATCTTGGTATTATTCATCGTGATGATGTATCTTCCTCCTTACACTTCGTTTCTCCCCGCTATAGAAAATGATCGATATGATCTACAATCTCATGATCAGAGGAAGAAAAAGAGAAGAGGAAAGCTCATGGATAATCTCATATTCTCACAGCTCTCCTATTTGACCATATTTATCATTCTAGTCTGCATAACGGAGAGGAAAAGCTTGAAAGAAGATCCCCTCAATTTCAATGTACTCAATATCGTGCTTGAAGTGATCAGTGCTTATGGAAATGTAGGGTTTACGACCGGCTATAGTTGTAAACGCCAGCTCAACCCTAACGGCGATTGTCAGGATAAATTGTATGGATTTTCAGGAAGATGGAGTGACGAGGGGAAAATAGTTCTTATAGCTGTCATGTTCTTCGGAAGACTCAAGAAATTCAACATGGATGGAGGTAAAGGATGGAAGCTCCTCTAA

Protein Analysis

513

Amino Acids

57.41

Weight (kDa)

8.95

Isoelectric Point (pI)

34.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TrkH PF02386 161 - 499 6.5e-32 Cation transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 957
AccI GTMKAC 1 cut(s) 1056
AciI CCGC 3 cut(s) 369, 1077, 1137
AclWI GGATC 2 cut(s) 1015, 1289
AcoI YGGCCR 1 cut(s) 211
AcsI RAATTY 4 cut(s) 419, 481, 801, 1499
AcuI CTGAAG 2 cut(s) 318, 461
AfaI GTAC 2 cut(s) 930, 1314
AfiI CCNNNNNNNGG 2 cut(s) 544, 957
AflII CTTAAG 1 cut(s) 973
AgeI ACCGGT 1 cut(s) 1040
AhlI ACTAGT 1 cut(s) 43
AjnI CCWGG 1 cut(s) 924
AjuI GAANNNNNNNTTGG 2 cut(s) 380, 412
Alw21I GWGCWC 1 cut(s) 317
Alw26I GTCTC 1 cut(s) 719
AlwI GGATC 2 cut(s) 1015, 1289
AlwNI CAGNNNCTG 1 cut(s) 158
AoxI GGCC 1 cut(s) 211
ApeKI GCWGC 1 cut(s) 449
ApoI RAATTY 4 cut(s) 419, 481, 801, 1499
AsiGI ACCGGT 1 cut(s) 1040
AspA2I CCTAGG 1 cut(s) 125
AsuHPI GGTGA 5 cut(s) 49, 139, 253, 628, 1055
AvrII CCTAGG 1 cut(s) 125
BalI TGGCCA 1 cut(s) 213
BbsI GAAGAC 3 cut(s) 193, 250, 1495
Bbv12I GWGCWC 1 cut(s) 317
BbvI GCAGC 1 cut(s) 461
BccI CCATC 6 cut(s) 239, 772, 1073, 1434, 1505, 1518
BceAI ACGGC 1 cut(s) 1417
BciT130I CCWGG 1 cut(s) 926
BciVI GTATCC 2 cut(s) 771, 854
BclI TGATCA 3 cut(s) 460, 1174, 1335
BcoDI GTCTC 1 cut(s) 719
BcuI ACTAGT 1 cut(s) 43
BfaI CTAG 5 cut(s) 44, 126, 566, 879, 1259
BfmI CTRYAG 2 cut(s) 1140, 1372
BfrI CTTAAG 1 cut(s) 973
BfuI GTATCC 2 cut(s) 771, 854
BisI GCNGC 1 cut(s) 450
BlnI CCTAGG 1 cut(s) 125
BlpI GCTNAGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 451
Bme1390I CCNGG 1 cut(s) 926
BmrFI CCNGG 1 cut(s) 926
BpiI GAAGAC 3 cut(s) 193, 250, 1495
BplI GAGNNNNNCTC 4 cut(s) 188, 220, 1188, 1220
Bpu1102I GCTNAGC 1 cut(s) 24
BpuEI CTTGAG 5 cut(s) 71, 640, 720, 793, 1478
Bsa29I ATCGAT 1 cut(s) 1153
BsaI GGTCTC 1 cut(s) 719
BsaJI CCNNGG 4 cut(s) 125, 267, 538, 951
BsaWI WCCGGW 2 cut(s) 710, 1040
Bsc4I CCNNNNNNNGG 2 cut(s) 544, 957
Bse118I RCCGGY 2 cut(s) 1040, 1367
Bse1I ACTGG 1 cut(s) 98
BseBI CCWGG 1 cut(s) 926
BseCI ATCGAT 1 cut(s) 1153
BseDI CCNNGG 4 cut(s) 125, 267, 538, 951
BseGI GGATG 5 cut(s) 231, 764, 921, 1516, 1529
BseLI CCNNNNNNNGG 2 cut(s) 544, 957
BseMII CTCAG 1 cut(s) 165
BseNI ACTGG 1 cut(s) 98
BseRI GAGGAG 1 cut(s) 1523
BseXI GCAGC 1 cut(s) 461
BsgI GTGCAG 1 cut(s) 869
Bsh1285I CGRYCG 1 cut(s) 1368
BshFI GGCC 1 cut(s) 213
BshTI ACCGGT 1 cut(s) 1040
BshVI ATCGAT 1 cut(s) 1153
BsiEI CGRYCG 1 cut(s) 1368
BsiHKAI GWGCWC 1 cut(s) 317
BsiSI CCGG 3 cut(s) 711, 1041, 1368
BslFI GGGAC 1 cut(s) 351
BslI CCNNNNNNNGG 2 cut(s) 544, 957
BsmAI GTCTC 1 cut(s) 719
BsmFI GGGAC 1 cut(s) 351
BsnI GGCC 1 cut(s) 213
Bso31I GGTCTC 1 cut(s) 719
Bsp1286I GDGCHC 1 cut(s) 317
Bsp143I GATC 7 cut(s) 460, 1007, 1150, 1159, 1174, 1294, 1335
Bsp1720I GCTNAGC 1 cut(s) 24
Bsp19I CCATGG 2 cut(s) 267, 951
BspACI CCGC 3 cut(s) 369, 1077, 1137
BspANI GGCC 1 cut(s) 213
BspCNI CTCAG 1 cut(s) 164
BspDI ATCGAT 1 cut(s) 1153
BspHI TCATGA 3 cut(s) 300, 427, 1171
BspPI GGATC 2 cut(s) 1015, 1289
BspQI GCTCTTC 1 cut(s) 361
BspTI CTTAAG 1 cut(s) 973
BspTNI GGTCTC 1 cut(s) 719
BsrFI RCCGGY 2 cut(s) 1040, 1367
BsrI ACTGG 1 cut(s) 98
BssAI RCCGGY 2 cut(s) 1040, 1367
BssECI CCNNGG 4 cut(s) 125, 267, 538, 951
BssMI GATC 7 cut(s) 460, 1007, 1150, 1159, 1174, 1294, 1335
BssT1I CCWWGG 4 cut(s) 125, 267, 538, 951
Bst2UI CCWGG 1 cut(s) 926
Bst4CI ACNGT 5 cut(s) 169, 187, 643, 910, 1024
Bst6I CTCTTC 2 cut(s) 361, 1189
BstAFI CTTAAG 1 cut(s) 973
BstC8I GCNNGC 2 cut(s) 215, 1388
BstDEI CTNAG 4 cut(s) 17, 24, 133, 151
BstDSI CCRYGG 2 cut(s) 267, 951
BstF5I GGATG 5 cut(s) 231, 764, 921, 1516, 1529
BstKTI GATC 7 cut(s) 463, 1010, 1153, 1162, 1177, 1297, 1338
BstMAI GTCTC 1 cut(s) 719
BstMBI GATC 7 cut(s) 460, 1007, 1150, 1159, 1174, 1294, 1335
BstMCI CGRYCG 1 cut(s) 1368
BstMWI GCNNNNNNNGC 1 cut(s) 351
BstNI CCWGG 1 cut(s) 926
BstNSI RCATGY 1 cut(s) 181
BstSCI CCNGG 1 cut(s) 924
BstSFI CTRYAG 2 cut(s) 1140, 1372
BstV1I GCAGC 1 cut(s) 461
BstV2I GAAGAC 3 cut(s) 193, 250, 1495
BstX2I RGATCY 2 cut(s) 1007, 1294
BstYI RGATCY 2 cut(s) 1007, 1294
Bsu15I ATCGAT 1 cut(s) 1153
BsuI GTATCC 2 cut(s) 771, 854
BsuRI GGCC 1 cut(s) 213
BsuTUI ATCGAT 1 cut(s) 1153
BtgI CCRYGG 2 cut(s) 267, 951
BtgZI GCGATG 1 cut(s) 360
BtsCI GGATG 5 cut(s) 231, 764, 921, 1516, 1529
BtsIMutI CAGTG 1 cut(s) 1345
Cac8I GCNNGC 2 cut(s) 215, 1388
CaiI CAGNNNCTG 1 cut(s) 158
CciI TCATGA 3 cut(s) 300, 427, 1171
Cfr10I RCCGGY 2 cut(s) 1040, 1367
ClaI ATCGAT 1 cut(s) 1153
Csp6I GTAC 2 cut(s) 929, 1313
CspAI ACCGGT 1 cut(s) 1040
CviQI GTAC 2 cut(s) 929, 1313
DdeI CTNAG 4 cut(s) 17, 24, 133, 151
DpnI GATC 7 cut(s) 462, 1009, 1152, 1161, 1176, 1296, 1337
DpnII GATC 7 cut(s) 460, 1007, 1150, 1159, 1174, 1294, 1335
EaeI YGGCCR 1 cut(s) 211
Eam1104I CTCTTC 2 cut(s) 361, 1189
EarI CTCTTC 2 cut(s) 361, 1189
Eco130I CCWWGG 4 cut(s) 125, 267, 538, 951
Eco31I GGTCTC 1 cut(s) 719
Eco57I CTGAAG 2 cut(s) 318, 461
EcoRI GAATTC 1 cut(s) 481
EcoRII CCWGG 1 cut(s) 924
EcoT14I CCWWGG 4 cut(s) 125, 267, 538, 951
ErhI CCWWGG 4 cut(s) 125, 267, 538, 951
FalI AAGNNNNNCTT 4 cut(s) 729, 761, 808, 840
FaqI GGGAC 1 cut(s) 351
FauI CCCGC 3 cut(s) 376, 1084, 1144
FbaI TGATCA 3 cut(s) 460, 1174, 1335
FblI GTMKAC 1 cut(s) 1056
Fnu4HI GCNGC 1 cut(s) 450
FokI GGATG 4 cut(s) 218, 751, 908, 1523
Fsp4HI GCNGC 1 cut(s) 450
FspBI CTAG 5 cut(s) 44, 126, 566, 879, 1259
GluI GCNGC 1 cut(s) 450
HaeIII GGCC 1 cut(s) 213
HapII CCGG 3 cut(s) 711, 1041, 1368
HincII GTYRAC 2 cut(s) 340, 1057
HindII GTYRAC 2 cut(s) 340, 1057
HindIII AAGCTT 2 cut(s) 970, 1282
HinfI GANTC 3 cut(s) 113, 821, 1491
HpaI GTTAAC 1 cut(s) 340
HpaII CCGG 3 cut(s) 711, 1041, 1368
HphI GGTGA 5 cut(s) 49, 139, 253, 628, 1055
Hpy166II GTNNAC 7 cut(s) 183, 340, 636, 980, 1057, 1362, 1382
Hpy188I TCNGA 4 cut(s) 480, 967, 1179, 1487
Hpy188III TCNNGA 9 cut(s) 286, 301, 428, 1032, 1099, 1172, 1412, 1434, 1495
Hpy8I GTNNAC 7 cut(s) 183, 340, 636, 980, 1057, 1362, 1382
Hpy99I CGWCG 1 cut(s) 1058
HpyAV CCTTC 3 cut(s) 23, 728, 752
HpyCH4III ACNGT 5 cut(s) 169, 187, 643, 910, 1024
HpyCH4IV ACGT 2 cut(s) 290, 591
HpyCH4V TGCA 5 cut(s) 449, 584, 828, 886, 1266
HpyF10VI GCNNNNNNNGC 1 cut(s) 351
HpyF3I CTNAG 4 cut(s) 17, 24, 133, 151
HpySE526I ACGT 2 cut(s) 290, 591
Ksp22I TGATCA 3 cut(s) 460, 1174, 1335
KspAI GTTAAC 1 cut(s) 340
Kzo9I GATC 7 cut(s) 460, 1007, 1150, 1159, 1174, 1294, 1335
LguI GCTCTTC 1 cut(s) 361
LmnI GCTCC 1 cut(s) 1536
Lsp1109I GCAGC 1 cut(s) 461
MaeI CTAG 5 cut(s) 44, 126, 566, 879, 1259
MaeII ACGT 2 cut(s) 290, 591
MaeIII GTNAC 3 cut(s) 55, 904, 1445
MalI GATC 7 cut(s) 462, 1009, 1152, 1161, 1176, 1296, 1337
MboI GATC 7 cut(s) 460, 1007, 1150, 1159, 1174, 1294, 1335
MflI RGATCY 2 cut(s) 1007, 1294
MhlI GDGCHC 1 cut(s) 317
MlsI TGGCCA 1 cut(s) 213
MluNI TGGCCA 1 cut(s) 213
MlyI GAGTC 2 cut(s) 107, 1485
MmeI TCCRAC 2 cut(s) 253, 838
Mox20I TGGCCA 1 cut(s) 213
MscI TGGCCA 1 cut(s) 213
MseI TTAA 5 cut(s) 224, 339, 489, 974, 984
MslI CAYNNNNRTG 6 cut(s) 224, 236, 266, 305, 1041, 1100
Msp20I TGGCCA 1 cut(s) 213
MspCI CTTAAG 1 cut(s) 973
MspI CCGG 3 cut(s) 711, 1041, 1368
MspR9I CCNGG 1 cut(s) 926
MvaI CCWGG 1 cut(s) 926
MwoI GCNNNNNNNGC 1 cut(s) 351
NcoI CCATGG 2 cut(s) 267, 951
NdeII GATC 7 cut(s) 460, 1007, 1150, 1159, 1174, 1294, 1335
NmuCI GTSAC 2 cut(s) 55, 1445
NspI RCATGY 1 cut(s) 181
PagI TCATGA 3 cut(s) 300, 427, 1171
PciSI GCTCTTC 1 cut(s) 361
PfeI GAWTC 1 cut(s) 821
PflMI CCANNNNNTGG 1 cut(s) 957
PinAI ACCGGT 1 cut(s) 1040
PkrI GCNGC 1 cut(s) 451
PleI GAGTC 2 cut(s) 107, 1485
PpsI GAGTC 2 cut(s) 107, 1485
Psp6I CCWGG 1 cut(s) 924
PspGI CCWGG 1 cut(s) 924
PstNI CAGNNNCTG 1 cut(s) 158
PsuI RGATCY 2 cut(s) 1007, 1294
RsaI GTAC 2 cut(s) 930, 1314
RsaNI GTAC 2 cut(s) 929, 1313
RseI CAYNNNNRTG 6 cut(s) 224, 236, 266, 305, 1041, 1100
SalI GTCGAC 1 cut(s) 1055
SapI GCTCTTC 1 cut(s) 361
SaqAI TTAA 5 cut(s) 224, 339, 489, 974, 984
SatI GCNGC 1 cut(s) 450
Sau3AI GATC 7 cut(s) 460, 1007, 1150, 1159, 1174, 1294, 1335
SchI GAGTC 2 cut(s) 107, 1485
ScrFI CCNGG 1 cut(s) 926
SduI GDGCHC 1 cut(s) 317
SfcI CTRYAG 2 cut(s) 1140, 1372
SmiMI CAYNNNNRTG 6 cut(s) 224, 236, 266, 305, 1041, 1100
SmlI CTYRAG 6 cut(s) 86, 655, 735, 772, 973, 1493
SmoI CTYRAG 6 cut(s) 86, 655, 735, 772, 973, 1493
SpeI ACTAGT 1 cut(s) 43
SsiI CCGC 3 cut(s) 369, 1077, 1137
SspI AATATT 1 cut(s) 391
SspMI CTAG 5 cut(s) 44, 126, 566, 879, 1259
StyD4I CCNGG 1 cut(s) 924
StyI CCWWGG 4 cut(s) 125, 267, 538, 951
TaaI ACNGT 5 cut(s) 169, 187, 643, 910, 1024
TaiI ACGT 2 cut(s) 293, 594
TaqI TCGA 3 cut(s) 173, 1056, 1153
TatI WGTACW 1 cut(s) 1312
TfiI GAWTC 1 cut(s) 821
Tru1I TTAA 5 cut(s) 224, 339, 489, 974, 984
Tru9I TTAA 5 cut(s) 224, 339, 489, 974, 984
TscAI CASTG 1 cut(s) 1345
TseFI GTSAC 2 cut(s) 55, 1445
TseI GCWGC 1 cut(s) 449
Tsp45I GTSAC 2 cut(s) 55, 1445
TspDTI ATGAA 8 cut(s) 232, 269, 348, 521, 608, 696, 910, 1084
TspGWI ACGGA 1 cut(s) 1286
TspRI CASTG 1 cut(s) 1345
Van91I CCANNNNNTGG 1 cut(s) 957
Vha464I CTTAAG 1 cut(s) 973
XapI RAATTY 4 cut(s) 419, 481, 801, 1499
XceI RCATGY 1 cut(s) 181
XcmI CCANNNNNNNNNTGG 3 cut(s) 190, 493, 1001
XmaJI CCTAGG 1 cut(s) 125
XmiI GTMKAC 1 cut(s) 1056
XspI CTAG 5 cut(s) 44, 126, 566, 879, 1259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.