Rh4BG081100

Cation transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0002671
Physical Location & Seq
Reverse (-)
14103883 .. 14107678
3796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG081100.1

Sequence Viewer

Length: 1551 bp
ATGGGATTTCTACTTCTATGCTATTATCGATTCCTCCTCCTTAGAGCTAAGCAATTCTGGGTGGAACTAGTTTATTTTGTTACCCTTTCCTTTTTGGGTTATTGGGTTCTGAAGGTATTGCCAGTTAGAACCACCGACTCTTTTACCCCTAGAAACTTAGATTTGTTCTTCACCTCAGTTTCTGCCACAACCGTTTCGAGCATGTCCACGGTTGAAATGGAGGTCTTCTCCAATGGCCAGCTCATCGTAATGACCATCCTAATGTTCATAGGTGGGGAGGTCTTCACCTCCATGGTTGGACTTCATTTCAAGAAGTTCAAGCTCATGATGATGATGAGCAGAACAGAGAAGACTGCTTTAGTTAACAGCGATGTTAGCTTCTTATCAAGTCCCGCAAAGGCGATTGATGAGAATATTGAATTGGGTCTGGCAATCGAGCCCGAATTTCCTCATGACCAAATTGGCAAAATTCCAGCAGTAGATGATCAATCCTTGACACTTCACAATTCCATTAAGCTTTTGGGTTACGTTGTTTTAGCTTATCTTCTAGTGGTTCATTTCCTTGGGGTGGCTATGGTGTTGGTTTATCTAGAATTTACTTCAAGTGCAAGAAACGTAGTAAAGAGCAAGGGGCTAAATGTTCATACATTCTCAATTTTCACCACAGTTTCAACTTTCTCGAGCTGTGGTTTTGTTCCCACCAATGAAAACATGATTGTCTTTAGCAAAAACTCAGGTCTCCTCCTAATACTCATTCCTCAAGTCCTTCTTGGGAACACATTGTATCCATCTTGCTTGAGATTTTCAATTTGGCTTTTAGGAAAAAGTTTCAAAAAGCTAAGAGATTCTTGCAATTACCTGTTGAAGAACACAAAGGAGGTTGGATACCTACACTTGCTTCCTAGTCTGCACTCATCACTCTTGGTCGTTACAGTTTTTGGCTTCATCCTGGTACAACTTGTACCTTTTGCCTCCATGGAGTGGAGTTCAGAAAGCTTAAGTGGACTTAATTCTTACCAGAAAATCATTGGATCTTTGTTCCAAACCGTCAATTCAAGACATACCGGTGAAACCATCATCGACCTCTCCATAATTTCTCCCGCAATCCTGGTATTATTCATCGTGATGATGTATCTTCCTCCTTACACTTCGTTCCTGCCCGCTAAAAAAAGTCTACAACCTCATAATCAGAGGAGGAAAAAGAGAAGAGGAAAGCTCATGGAGAATCTCATATTCTCACAGCTCTCCTATTTGACCATCTTTATCATCTTAGTCTGCATAACTGAGAGGAAAAGCTTGAAAGAAGATCCCCTCAATTTCAATGTGCTCAATATCGTGCTAGAAGTCATCAGTGCTTATGGAAATGTAGGGTTTACGACTGGCTATAGTTGTAAACGACAGCTCAACCCTAATGGCGATTGTCAGGATAAATGGTATGGATTTTCAGGAAGATGGAGCGACGAGGGGAAAATAGTTCTCATAGCTGTCATGTTCTTCGGAAGACTCAAGAAATTCAACATGGATGGAGGTAAAGGATGGAAACTCCTCTAA

Protein Analysis

516

Amino Acids

58.26

Weight (kDa)

9.36

Isoelectric Point (pI)

33.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TrkH PF02386 168 - 503 6.5e-28 Cation transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 981
AccI GTMKAC 1 cut(s) 1174
AciI CCGC 3 cut(s) 393, 1101, 1161
AclWI GGATC 2 cut(s) 1039, 1301
AcoI YGGCCR 1 cut(s) 235
AcsI RAATTY 4 cut(s) 443, 468, 593, 1511
AcuI CTGAAG 1 cut(s) 131
AfaI GTAC 2 cut(s) 954, 963
AfiI CCNNNNNNNGG 2 cut(s) 568, 981
AflII CTTAAG 1 cut(s) 997
AgeI ACCGGT 1 cut(s) 1064
AhlI ACTAGT 1 cut(s) 67
AjnI CCWGG 2 cut(s) 948, 1107
AjuI GAANNNNNNNTTGG 2 cut(s) 404, 436
Alw21I GWGCWC 1 cut(s) 1329
Alw26I GTCTC 1 cut(s) 743
AlwI GGATC 2 cut(s) 1039, 1301
AlwNI CAGNNNCTG 1 cut(s) 182
Ama87I CYCGRG 1 cut(s) 679
AoxI GGCC 1 cut(s) 235
ApoI RAATTY 4 cut(s) 443, 468, 593, 1511
AsiGI ACCGGT 1 cut(s) 1064
AsuHPI GGTGA 4 cut(s) 163, 277, 652, 1079
AvaI CYCGRG 1 cut(s) 679
BalI TGGCCA 1 cut(s) 237
BanII GRGCYC 1 cut(s) 441
BbsI GAAGAC 4 cut(s) 217, 274, 356, 1507
Bbv12I GWGCWC 1 cut(s) 1329
BccI CCATC 7 cut(s) 263, 796, 1082, 1265, 1446, 1517, 1530
BciT130I CCWGG 2 cut(s) 950, 1109
BciVI GTATCC 2 cut(s) 795, 878
BclI TGATCA 1 cut(s) 484
BcoDI GTCTC 1 cut(s) 743
BcuI ACTAGT 1 cut(s) 67
BfaI CTAG 6 cut(s) 68, 150, 548, 590, 903, 1340
BfmI CTRYAG 1 cut(s) 1384
BfrI CTTAAG 1 cut(s) 997
BfuI GTATCC 2 cut(s) 795, 878
BlpI GCTNAGC 1 cut(s) 48
Bme1390I CCNGG 2 cut(s) 950, 1109
BmeT110I CYCGRG 1 cut(s) 679
BmrFI CCNGG 2 cut(s) 950, 1109
BpiI GAAGAC 4 cut(s) 217, 274, 356, 1507
BplI GAGNNNNNCTC 4 cut(s) 212, 244, 1200, 1232
Bpu1102I GCTNAGC 1 cut(s) 48
BpuEI CTTGAG 3 cut(s) 744, 817, 1490
Bsa29I ATCGAT 1 cut(s) 28
BsaI GGTCTC 1 cut(s) 743
BsaJI CCNNGG 4 cut(s) 207, 291, 562, 975
BsaWI WCCGGW 1 cut(s) 1064
Bsc4I CCNNNNNNNGG 2 cut(s) 568, 981
Bse118I RCCGGY 1 cut(s) 1064
Bse1I ACTGG 2 cut(s) 122, 1384
BseBI CCWGG 2 cut(s) 950, 1109
BseCI ATCGAT 1 cut(s) 28
BseDI CCNNGG 4 cut(s) 207, 291, 562, 975
BseGI GGATG 4 cut(s) 255, 945, 1528, 1541
BseLI CCNNNNNNNGG 2 cut(s) 568, 981
BseMII CTCAG 3 cut(s) 189, 747, 1275
BseNI ACTGG 2 cut(s) 122, 1384
BseRI GAGGAG 4 cut(s) 26, 731, 1207, 1535
BsgI GTGCAG 1 cut(s) 893
BshFI GGCC 1 cut(s) 237
BshTI ACCGGT 1 cut(s) 1064
BshVI ATCGAT 1 cut(s) 28
BsiHKAI GWGCWC 1 cut(s) 1329
BsiHKCI CYCGRG 1 cut(s) 679
BsiSI CCGG 1 cut(s) 1065
BslFI GGGAC 1 cut(s) 375
BslI CCNNNNNNNGG 2 cut(s) 568, 981
BsmAI GTCTC 1 cut(s) 743
BsmFI GGGAC 1 cut(s) 375
BsnI GGCC 1 cut(s) 237
Bso31I GGTCTC 1 cut(s) 743
BsoBI CYCGRG 1 cut(s) 679
Bsp1286I GDGCHC 2 cut(s) 441, 1329
Bsp143I GATC 3 cut(s) 484, 1031, 1306
Bsp1720I GCTNAGC 1 cut(s) 48
Bsp19I CCATGG 2 cut(s) 291, 975
BspACI CCGC 3 cut(s) 393, 1101, 1161
BspANI GGCC 1 cut(s) 237
BspCNI CTCAG 3 cut(s) 188, 746, 1276
BspDI ATCGAT 1 cut(s) 28
BspHI TCATGA 2 cut(s) 324, 451
BspPI GGATC 2 cut(s) 1039, 1301
BspTI CTTAAG 1 cut(s) 997
BspTNI GGTCTC 1 cut(s) 743
BsrFI RCCGGY 1 cut(s) 1064
BsrI ACTGG 2 cut(s) 122, 1384
BssAI RCCGGY 1 cut(s) 1064
BssECI CCNNGG 4 cut(s) 207, 291, 562, 975
BssMI GATC 3 cut(s) 484, 1031, 1306
BssT1I CCWWGG 3 cut(s) 291, 562, 975
Bst2UI CCWGG 2 cut(s) 950, 1109
Bst4CI ACNGT 5 cut(s) 193, 211, 667, 934, 1048
Bst6I CTCTTC 1 cut(s) 1201
BstAFI CTTAAG 1 cut(s) 997
BstC8I GCNNGC 2 cut(s) 239, 1161
BstDEI CTNAG 8 cut(s) 41, 48, 157, 175, 733, 839, 1270, 1284
BstDSI CCRYGG 3 cut(s) 207, 291, 975
BstF5I GGATG 4 cut(s) 255, 945, 1528, 1541
BstKTI GATC 3 cut(s) 487, 1034, 1309
BstMAI GTCTC 1 cut(s) 743
BstMBI GATC 3 cut(s) 484, 1031, 1306
BstMWI GCNNNNNNNGC 1 cut(s) 375
BstNI CCWGG 2 cut(s) 950, 1109
BstNSI RCATGY 1 cut(s) 205
BstSCI CCNGG 2 cut(s) 948, 1107
BstSFI CTRYAG 1 cut(s) 1384
BstV2I GAAGAC 4 cut(s) 217, 274, 356, 1507
BstX2I RGATCY 2 cut(s) 1031, 1306
BstYI RGATCY 2 cut(s) 1031, 1306
Bsu15I ATCGAT 1 cut(s) 28
BsuI GTATCC 2 cut(s) 795, 878
BsuRI GGCC 1 cut(s) 237
BsuTUI ATCGAT 1 cut(s) 28
BtgI CCRYGG 3 cut(s) 207, 291, 975
BtgZI GCGATG 1 cut(s) 384
BtsCI GGATG 4 cut(s) 255, 945, 1528, 1541
BtsIMutI CAGTG 1 cut(s) 1357
Cac8I GCNNGC 2 cut(s) 239, 1161
CaiI CAGNNNCTG 1 cut(s) 182
CciI TCATGA 2 cut(s) 324, 451
Cfr10I RCCGGY 1 cut(s) 1064
ClaI ATCGAT 1 cut(s) 28
Csp6I GTAC 2 cut(s) 953, 962
CspAI ACCGGT 1 cut(s) 1064
CviAII CATG 9 cut(s) 202, 292, 325, 452, 712, 976, 1219, 1489, 1519
CviQI GTAC 2 cut(s) 953, 962
DdeI CTNAG 8 cut(s) 41, 48, 157, 175, 733, 839, 1270, 1284
DpnI GATC 3 cut(s) 486, 1033, 1308
DpnII GATC 3 cut(s) 484, 1031, 1306
EaeI YGGCCR 1 cut(s) 235
Eam1104I CTCTTC 1 cut(s) 1201
EarI CTCTTC 1 cut(s) 1201
Eco130I CCWWGG 3 cut(s) 291, 562, 975
Eco24I GRGCYC 1 cut(s) 441
Eco31I GGTCTC 1 cut(s) 743
Eco57I CTGAAG 1 cut(s) 131
Eco88I CYCGRG 1 cut(s) 679
EcoRII CCWGG 2 cut(s) 948, 1107
EcoT14I CCWWGG 3 cut(s) 291, 562, 975
EcoT38I GRGCYC 1 cut(s) 441
ErhI CCWWGG 3 cut(s) 291, 562, 975
FaeI CATG 9 cut(s) 205, 295, 328, 455, 715, 979, 1222, 1492, 1522
FalI AAGNNNNNCTT 4 cut(s) 753, 785, 832, 864
FaqI GGGAC 1 cut(s) 375
FatI CATG 9 cut(s) 201, 291, 324, 451, 711, 975, 1218, 1488, 1518
FauI CCCGC 3 cut(s) 400, 1108, 1168
FbaI TGATCA 1 cut(s) 484
FblI GTMKAC 1 cut(s) 1174
FokI GGATG 3 cut(s) 242, 932, 1535
FriOI GRGCYC 1 cut(s) 441
FspBI CTAG 6 cut(s) 68, 150, 548, 590, 903, 1340
HaeIII GGCC 1 cut(s) 237
HapII CCGG 1 cut(s) 1065
Hin1II CATG 9 cut(s) 205, 295, 328, 455, 715, 979, 1222, 1492, 1522
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HindIII AAGCTT 3 cut(s) 515, 994, 1294
HinfI GANTC 5 cut(s) 30, 137, 845, 1225, 1503
HpaI GTTAAC 1 cut(s) 364
HpaII CCGG 1 cut(s) 1065
HphI GGTGA 4 cut(s) 163, 277, 652, 1079
Hpy166II GTNNAC 6 cut(s) 207, 364, 1004, 1175, 1374, 1394
Hpy188I TCNGA 4 cut(s) 111, 991, 1191, 1499
Hpy8I GTNNAC 6 cut(s) 207, 364, 1004, 1175, 1374, 1394
Hpy99I CGWCG 1 cut(s) 1463
HpyAV CCTTC 2 cut(s) 106, 776
HpyCH4III ACNGT 5 cut(s) 193, 211, 667, 934, 1048
HpyCH4IV ACGT 2 cut(s) 528, 615
HpyCH4V TGCA 4 cut(s) 608, 852, 910, 1278
HpyF10VI GCNNNNNNNGC 1 cut(s) 375
HpyF3I CTNAG 8 cut(s) 41, 48, 157, 175, 733, 839, 1270, 1284
HpySE526I ACGT 2 cut(s) 528, 615
Hsp92II CATG 9 cut(s) 205, 295, 328, 455, 715, 979, 1222, 1492, 1522
Ksp22I TGATCA 1 cut(s) 484
KspAI GTTAAC 1 cut(s) 364
Kzo9I GATC 3 cut(s) 484, 1031, 1306
LmnI GCTCC 1 cut(s) 1455
MaeI CTAG 6 cut(s) 68, 150, 548, 590, 903, 1340
MaeII ACGT 2 cut(s) 528, 615
MaeIII GTNAC 3 cut(s) 79, 524, 928
MalI GATC 3 cut(s) 486, 1033, 1308
MboI GATC 3 cut(s) 484, 1031, 1306
MflI RGATCY 2 cut(s) 1031, 1306
MhlI GDGCHC 2 cut(s) 441, 1329
MlsI TGGCCA 1 cut(s) 237
MluNI TGGCCA 1 cut(s) 237
MlyI GAGTC 2 cut(s) 131, 1497
MmeI TCCRAC 2 cut(s) 277, 862
Mox20I TGGCCA 1 cut(s) 237
MscI TGGCCA 1 cut(s) 237
MseI TTAA 4 cut(s) 363, 513, 998, 1008
MslI CAYNNNNRTG 6 cut(s) 248, 260, 290, 329, 1065, 1124
Msp20I TGGCCA 1 cut(s) 237
MspCI CTTAAG 1 cut(s) 997
MspI CCGG 1 cut(s) 1065
MspR9I CCNGG 2 cut(s) 950, 1109
MvaI CCWGG 2 cut(s) 950, 1109
MwoI GCNNNNNNNGC 1 cut(s) 375
NcoI CCATGG 2 cut(s) 291, 975
NdeII GATC 3 cut(s) 484, 1031, 1306
NlaIII CATG 9 cut(s) 205, 295, 328, 455, 715, 979, 1222, 1492, 1522
NspI RCATGY 1 cut(s) 205
PaeR7I CTCGAG 1 cut(s) 679
PagI TCATGA 2 cut(s) 324, 451
PfeI GAWTC 3 cut(s) 30, 845, 1225
PflMI CCANNNNNTGG 1 cut(s) 981
PinAI ACCGGT 1 cut(s) 1064
PleI GAGTC 2 cut(s) 131, 1497
PpsI GAGTC 2 cut(s) 131, 1497
Psp6I CCWGG 2 cut(s) 948, 1107
PspGI CCWGG 2 cut(s) 948, 1107
PstNI CAGNNNCTG 1 cut(s) 182
PsuI RGATCY 2 cut(s) 1031, 1306
RsaI GTAC 2 cut(s) 954, 963
RsaNI GTAC 2 cut(s) 953, 962
RseI CAYNNNNRTG 6 cut(s) 248, 260, 290, 329, 1065, 1124
SaqAI TTAA 4 cut(s) 363, 513, 998, 1008
Sau3AI GATC 3 cut(s) 484, 1031, 1306
SchI GAGTC 2 cut(s) 131, 1497
ScrFI CCNGG 2 cut(s) 950, 1109
SduI GDGCHC 2 cut(s) 441, 1329
SfcI CTRYAG 1 cut(s) 1384
Sfr274I CTCGAG 1 cut(s) 679
SlaI CTCGAG 1 cut(s) 679
SmiMI CAYNNNNRTG 6 cut(s) 248, 260, 290, 329, 1065, 1124
SmlI CTYRAG 5 cut(s) 679, 759, 796, 997, 1505
SmoI CTYRAG 5 cut(s) 679, 759, 796, 997, 1505
SpeI ACTAGT 1 cut(s) 67
SsiI CCGC 3 cut(s) 393, 1101, 1161
SspI AATATT 1 cut(s) 415
SspMI CTAG 6 cut(s) 68, 150, 548, 590, 903, 1340
StyD4I CCNGG 2 cut(s) 948, 1107
StyI CCWWGG 3 cut(s) 291, 562, 975
TaaI ACNGT 5 cut(s) 193, 211, 667, 934, 1048
TaiI ACGT 2 cut(s) 531, 618
TaqI TCGA 5 cut(s) 28, 197, 435, 680, 1080
TfiI GAWTC 3 cut(s) 30, 845, 1225
Tru1I TTAA 4 cut(s) 363, 513, 998, 1008
Tru9I TTAA 4 cut(s) 363, 513, 998, 1008
TscAI CASTG 1 cut(s) 1357
TspDTI ATGAA 7 cut(s) 256, 293, 545, 632, 720, 934, 1108
TspRI CASTG 1 cut(s) 1357
Van91I CCANNNNNTGG 1 cut(s) 981
Vha464I CTTAAG 1 cut(s) 997
XapI RAATTY 4 cut(s) 443, 468, 593, 1511
XbaI TCTAGA 1 cut(s) 589
XceI RCATGY 1 cut(s) 205
XcmI CCANNNNNNNNNTGG 3 cut(s) 214, 517, 1025
XhoI CTCGAG 1 cut(s) 679
XmiI GTMKAC 1 cut(s) 1174
XspI CTAG 6 cut(s) 68, 150, 548, 590, 903, 1340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.