Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002671

Physical Location & Seq

Genomic Coordinates Reverse (-)

14429450 .. 14435095

Gene Structure 5646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G006930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1617 bp

ATGAACAGCTTTGCTTGTTTTGGCCAGAAATTGCACCACCTTTGCACTTGTTCATTTCTCAAACTAGCATTTCTTAGCCAATCCATGGGATTTCTACTTCTATGCTATTATCGATTTCTCCTTCTTAGAGCTAAGCAATTCTGGGTGGAACTAGTTTATTTTGTCACCCTTTCCTTTTTGGGTTATTGGGTTCTCAAGGTATTGCCAGTTAGAACCACCGACTCTTTTACCCCTAGGAATTTGGATTTGTTCTTCACCTCAGTTTCTGCCACAACCGTTTCGAGCATGTCCACAGTTGAAATGGAGGTCTTCTCCAATGGCCAGCTCATCTTAATGACCATACTAATGTTCATAGGTGGGGAGGTCTTCACCTCCATGGTTGGACTTCATTTCAAGAAGTTCAAGCTCACGATGATGATGAGCACAAAAGAGAAGATTGCTTCAGTTAACAGCGATGTTAGCTCTTCATCAAGTCCCGCAAGGCCGACTAATGAGAATATTGAATTGGGCTTGGCAATCAAGCCCGAATTTCCTCATGGTCAATCCTTGACACTTCAGAATTCTATTAAACTTTTGGGTTACGTTGTTTTAGCTTATCTTCTAGTGGTTCATTTCCTTGGGGTGGCTATGGTTTTGGTTTATCTAGCATTTACTTCAAGTGCAAGAAACGTAGTAAAGAACAAGGGGATAAATGTTCATACATTCTCATTCTTCACCACAGTTTCAACTTTCTCAAGTTGTGGTTTTGTTCCCACCAATGAAAACATGATTGTCTTTAGCAAAAACTCCGGTCTCCTTCTAATACTCATTCCTCAAGTCCTTCTTGGGAACACATTGTATCCATCTTGCTTGAGATTTTCAATTTGGCTTTTGGGAAAAATTTTCAAAAAGCAAAGAGATTCTTGCAAATACCTGTTGAAGAACACAAAGGAGGTTGGATACCTACACTTGCTTCCTAGTCTGCACTCATCACTCTTGGTCGTAACAGTTTTTGGGTTCATCCTGGTACAACTTCTACCTTTTGCCTCCATGGAGTGGAGTTCAGAAAGCTTAAGTGGACTTAATTCTTACCAGAAAATCATTGGATCTTTGTTCCAAACCGTCAATTCAAGACACACCGGTGAAACCATCGTCGACCTCTCCATCATTTCTCCCGCAATCTTGGTATTATTCATCGTGATGATGTATCTTCCTCCTTACACTTCGTTTCTCCCCGCTATAGAAAATGATCGATATGATCTACAATCTCATGATCAGATGAAGAAAAAGAGAAGAGGAAAGCTCATGGATAATCTCATATTCTCACAGCTCTCCTATTTGACCATATTTATCATTCTAGTCTGCATAACGGAGAGGAAAAGCTTGAAAGAAGATCCCCTCAATTTCAATGTACTCAATATAGTGCTTGAAGTCATCAGTGCTTATGGAAATGTAGGGTTTACGACCGGCTATAGTTGTAAACGCCAGCTCAACCCTAACGGAGATTGCCAGGATAAATGGTATGGATTTTCAGGAAGATGGAGTGACGAGGGGAAAATAGTTGTTATAGCTGTCATGTTCTTCGGAAGACTCAAGAAATTCAACATGGATGGAGGTAAAGGATGGAAGCTCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006814 GO:0008150 GO:0008324 GO:0015075 GO:0015077 GO:0015081 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0035725 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TrkH

Protein Analysis

538

Amino Acids

60.72

Weight (kDa)

9.37

Isoelectric Point (pI)

34.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TrkH	PF02386	187 - 492	1.9e-30	Cation transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10310
fragaria_vesca	FvH4_4g06400 FvH4_4g06412 FvH4_4g06420 FvH4_4g06420 FvH4_4g06420 FvH4_4g06420
malus_domestica	MD16G1240400.v1.1
prunus_persica	Prupe.1G066800_v2.0.a1 Prupe.1G067100_v2.0.a1
pyrus_communis	pycom16g20110
rosa_chinensis	RchiOBHm_Chr4g0398141 RchiOBHm_Chr4g0398151
rosa_laevigata	RLG00000009382 RLG00000009383 RLG00000035139
rosa_multiflora	Rmu_sc0002035.1_g000011 Rmu_sc0002378.1_g000014 Rmu_sc0002378.1_g000025 Rmu_sc0008195.1_g000011 Rmu_sc0023295.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023290 Rroxscaffold_5G00343040 Rroxscaffold_5G00343070
rosa_rugosa	Rorug04G0006300 Rorug04G0006600 Rorug05G0304200
rosa_samantha	Rh4AG083400 Rh4AG083500 Rh4BG081100 Rh4BG081300 Rh4CG090400 Rh4CG090600 Rh4DG076000 Rh4DG076300 Rh5BG384700 Rh5DG398100
rosa_wichuraiana	Rw4G006930 Rw4G006940 Rw5G035170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	85, 1035
AccI	GTMKAC	1 cut(s)	1134
AciI	CCGC	3 cut(s)	477, 1155, 1215
AclWI	GGATC	2 cut(s)	1093, 1367
AcoI	YGGCCR	2 cut(s)	22, 319
AcsI	RAATTY	5 cut(s)	238, 527, 559, 879, 1577
AcuI	CTGAAG	2 cut(s)	426, 539
AfaI	GTAC	2 cut(s)	1008, 1392
AfiI	CCNNNNNNNGG	3 cut(s)	85, 622, 1035
AflII	CTTAAG	1 cut(s)	1051
AgeI	ACCGGT	1 cut(s)	1118
AhlI	ACTAGT	1 cut(s)	151
AjnI	CCWGG	2 cut(s)	1002, 1488
AjuI	GAANNNNNNNTTGG	2 cut(s)	488, 520
AleI	CACNNNNGTG	1 cut(s)	1119
Alw21I	GWGCWC	1 cut(s)	425
Alw26I	GTCTC	1 cut(s)	797
AlwI	GGATC	2 cut(s)	1093, 1367
AlwNI	CAGNNNCTG	1 cut(s)	266
AoxI	GGCC	3 cut(s)	22, 319, 482
ApoI	RAATTY	5 cut(s)	238, 527, 559, 879, 1577
AsiGI	ACCGGT	1 cut(s)	1118
AspA2I	CCTAGG	1 cut(s)	233
AsuHPI	GGTGA	5 cut(s)	157, 247, 361, 706, 1133
AvrII	CCTAGG	1 cut(s)	233
BalI	TGGCCA	2 cut(s)	24, 321
BbsI	GAAGAC	3 cut(s)	301, 358, 1573
Bbv12I	GWGCWC	1 cut(s)	425
BccI	CCATC	6 cut(s)	850, 1136, 1151, 1512, 1583, 1596
BciT130I	CCWGG	2 cut(s)	1004, 1490
BciVI	GTATCC	2 cut(s)	849, 932
BclI	TGATCA	1 cut(s)	1252
BcoDI	GTCTC	1 cut(s)	797
BcuI	ACTAGT	1 cut(s)	151
BfaI	CTAG	7 cut(s)	65, 152, 234, 602, 644, 957, 1337
BfmI	CTRYAG	2 cut(s)	1218, 1450
BfrI	CTTAAG	1 cut(s)	1051
BfuI	GTATCC	2 cut(s)	849, 932
BlnI	CCTAGG	1 cut(s)	233
BlpI	GCTNAGC	1 cut(s)	132
Bme1390I	CCNGG	2 cut(s)	1004, 1490
BmrFI	CCNGG	2 cut(s)	1004, 1490
BpiI	GAAGAC	3 cut(s)	301, 358, 1573
BplI	GAGNNNNNCTC	4 cut(s)	296, 328, 1266, 1298
Bpu1102I	GCTNAGC	1 cut(s)	132
BpuEI	CTTGAG	5 cut(s)	179, 718, 798, 871, 1556
Bsa29I	ATCGAT	2 cut(s)	112, 1231
BsaI	GGTCTC	1 cut(s)	797
BsaJI	CCNNGG	5 cut(s)	84, 233, 375, 616, 1029
BsaWI	WCCGGW	2 cut(s)	788, 1118
Bsc4I	CCNNNNNNNGG	3 cut(s)	85, 622, 1035
Bse118I	RCCGGY	2 cut(s)	1118, 1445
Bse1I	ACTGG	1 cut(s)	206
BseBI	CCWGG	2 cut(s)	1004, 1490
BseCI	ATCGAT	2 cut(s)	112, 1231
BseDI	CCNNGG	5 cut(s)	84, 233, 375, 616, 1029
BseGI	GGATG	3 cut(s)	999, 1594, 1607
BseLI	CCNNNNNNNGG	3 cut(s)	85, 622, 1035
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	1 cut(s)	206
BseRI	GAGGAG	1 cut(s)	1601
BsgI	GTGCAG	1 cut(s)	947
Bsh1285I	CGRYCG	1 cut(s)	1446
BshFI	GGCC	3 cut(s)	24, 321, 484
BshTI	ACCGGT	1 cut(s)	1118
BshVI	ATCGAT	2 cut(s)	112, 1231
BsiEI	CGRYCG	1 cut(s)	1446
BsiHKAI	GWGCWC	1 cut(s)	425
BsiSI	CCGG	3 cut(s)	789, 1119, 1446
BslFI	GGGAC	1 cut(s)	459
BslI	CCNNNNNNNGG	3 cut(s)	85, 622, 1035
BsmAI	GTCTC	1 cut(s)	797
BsmFI	GGGAC	1 cut(s)	459
BsnI	GGCC	3 cut(s)	24, 321, 484
Bso31I	GGTCTC	1 cut(s)	797
Bsp1286I	GDGCHC	1 cut(s)	425
Bsp143I	GATC	5 cut(s)	1085, 1228, 1237, 1252, 1372
Bsp1720I	GCTNAGC	1 cut(s)	132
Bsp19I	CCATGG	3 cut(s)	84, 375, 1029
BspACI	CCGC	3 cut(s)	477, 1155, 1215
BspANI	GGCC	3 cut(s)	24, 321, 484
BspCNI	CTCAG	1 cut(s)	272
BspDI	ATCGAT	2 cut(s)	112, 1231
BspHI	TCATGA	1 cut(s)	1249
BspPI	GGATC	2 cut(s)	1093, 1367
BspQI	GCTCTTC	1 cut(s)	469
BspTI	CTTAAG	1 cut(s)	1051
BspTNI	GGTCTC	1 cut(s)	797
BsrFI	RCCGGY	2 cut(s)	1118, 1445
BsrI	ACTGG	1 cut(s)	206
BssAI	RCCGGY	2 cut(s)	1118, 1445
BssECI	CCNNGG	5 cut(s)	84, 233, 375, 616, 1029
BssMI	GATC	5 cut(s)	1085, 1228, 1237, 1252, 1372
BssT1I	CCWWGG	5 cut(s)	84, 233, 375, 616, 1029
Bst2UI	CCWGG	2 cut(s)	1004, 1490
Bst4CI	ACNGT	5 cut(s)	277, 295, 721, 988, 1102
Bst6I	CTCTTC	2 cut(s)	469, 1267
BstAFI	CTTAAG	1 cut(s)	1051
BstC8I	GCNNGC	2 cut(s)	323, 1466
BstDEI	CTNAG	4 cut(s)	74, 125, 132, 259
BstDSI	CCRYGG	3 cut(s)	84, 375, 1029
BstF5I	GGATG	3 cut(s)	999, 1594, 1607
BstKTI	GATC	5 cut(s)	1088, 1231, 1240, 1255, 1375
BstMAI	GTCTC	1 cut(s)	797
BstMBI	GATC	5 cut(s)	1085, 1228, 1237, 1252, 1372
BstMCI	CGRYCG	1 cut(s)	1446
BstMWI	GCNNNNNNNGC	1 cut(s)	459
BstNI	CCWGG	2 cut(s)	1004, 1490
BstNSI	RCATGY	1 cut(s)	289
BstSCI	CCNGG	2 cut(s)	1002, 1488
BstSFI	CTRYAG	2 cut(s)	1218, 1450
BstV2I	GAAGAC	3 cut(s)	301, 358, 1573
BstX2I	RGATCY	2 cut(s)	1085, 1372
BstYI	RGATCY	2 cut(s)	1085, 1372
Bsu15I	ATCGAT	2 cut(s)	112, 1231
BsuI	GTATCC	2 cut(s)	849, 932
BsuRI	GGCC	3 cut(s)	24, 321, 484
BsuTUI	ATCGAT	2 cut(s)	112, 1231
BtgI	CCRYGG	3 cut(s)	84, 375, 1029
BtgZI	GCGATG	1 cut(s)	468
BtsCI	GGATG	3 cut(s)	999, 1594, 1607
BtsIMutI	CAGTG	1 cut(s)	1423
Cac8I	GCNNGC	2 cut(s)	323, 1466
CaiI	CAGNNNCTG	1 cut(s)	266
CciI	TCATGA	1 cut(s)	1249
Cfr10I	RCCGGY	2 cut(s)	1118, 1445
ClaI	ATCGAT	2 cut(s)	112, 1231
Csp6I	GTAC	2 cut(s)	1007, 1391
CspAI	ACCGGT	1 cut(s)	1118
CviQI	GTAC	2 cut(s)	1007, 1391
DdeI	CTNAG	4 cut(s)	74, 125, 132, 259
DpnI	GATC	5 cut(s)	1087, 1230, 1239, 1254, 1374
DpnII	GATC	5 cut(s)	1085, 1228, 1237, 1252, 1372
EaeI	YGGCCR	2 cut(s)	22, 319
Eam1104I	CTCTTC	2 cut(s)	469, 1267
EarI	CTCTTC	2 cut(s)	469, 1267
Eco130I	CCWWGG	5 cut(s)	84, 233, 375, 616, 1029
Eco31I	GGTCTC	1 cut(s)	797
Eco57I	CTGAAG	2 cut(s)	426, 539
EcoRI	GAATTC	1 cut(s)	559
EcoRII	CCWGG	2 cut(s)	1002, 1488
EcoT14I	CCWWGG	5 cut(s)	84, 233, 375, 616, 1029
ErhI	CCWWGG	5 cut(s)	84, 233, 375, 616, 1029
FalI	AAGNNNNNCTT	4 cut(s)	807, 839, 886, 918
FaqI	GGGAC	1 cut(s)	459
FauI	CCCGC	3 cut(s)	484, 1162, 1222
FbaI	TGATCA	1 cut(s)	1252
FblI	GTMKAC	1 cut(s)	1134
FokI	GGATG	2 cut(s)	986, 1601
FspBI	CTAG	7 cut(s)	65, 152, 234, 602, 644, 957, 1337
HaeIII	GGCC	3 cut(s)	24, 321, 484
HapII	CCGG	3 cut(s)	789, 1119, 1446
HincII	GTYRAC	2 cut(s)	448, 1135
HindII	GTYRAC	2 cut(s)	448, 1135
HindIII	AAGCTT	2 cut(s)	1048, 1360
HinfI	GANTC	3 cut(s)	221, 899, 1569
HpaI	GTTAAC	1 cut(s)	448
HpaII	CCGG	3 cut(s)	789, 1119, 1446
HphI	GGTGA	5 cut(s)	157, 247, 361, 706, 1133
Hpy166II	GTNNAC	6 cut(s)	291, 448, 1058, 1135, 1440, 1460
Hpy188I	TCNGA	4 cut(s)	558, 1045, 1257, 1565
Hpy188III	TCNNGA	7 cut(s)	394, 409, 1110, 1177, 1250, 1512, 1573
Hpy8I	GTNNAC	6 cut(s)	291, 448, 1058, 1135, 1440, 1460
Hpy99I	CGWCG	1 cut(s)	1136
HpyAV	CCTTC	3 cut(s)	131, 806, 830
HpyCH4III	ACNGT	5 cut(s)	277, 295, 721, 988, 1102
HpyCH4IV	ACGT	2 cut(s)	582, 669
HpyCH4V	TGCA	6 cut(s)	34, 45, 662, 906, 964, 1344
HpyF10VI	GCNNNNNNNGC	1 cut(s)	459
HpyF3I	CTNAG	4 cut(s)	74, 125, 132, 259
HpySE526I	ACGT	2 cut(s)	582, 669
Ksp22I	TGATCA	1 cut(s)	1252
KspAI	GTTAAC	1 cut(s)	448
Kzo9I	GATC	5 cut(s)	1085, 1228, 1237, 1252, 1372
LguI	GCTCTTC	1 cut(s)	469
LmnI	GCTCC	1 cut(s)	1614
MaeI	CTAG	7 cut(s)	65, 152, 234, 602, 644, 957, 1337
MaeII	ACGT	2 cut(s)	582, 669
MaeIII	GTNAC	4 cut(s)	163, 578, 982, 1523
MalI	GATC	5 cut(s)	1087, 1230, 1239, 1254, 1374
MboI	GATC	5 cut(s)	1085, 1228, 1237, 1252, 1372
MflI	RGATCY	2 cut(s)	1085, 1372
MhlI	GDGCHC	1 cut(s)	425
MlsI	TGGCCA	2 cut(s)	24, 321
MluNI	TGGCCA	2 cut(s)	24, 321
MlyI	GAGTC	2 cut(s)	215, 1563
MmeI	TCCRAC	2 cut(s)	361, 916
Mox20I	TGGCCA	2 cut(s)	24, 321
MscI	TGGCCA	2 cut(s)	24, 321
MseI	TTAA	5 cut(s)	332, 447, 567, 1052, 1062
MslI	CAYNNNNRTG	6 cut(s)	332, 344, 374, 413, 1119, 1178
Msp20I	TGGCCA	2 cut(s)	24, 321
MspCI	CTTAAG	1 cut(s)	1051
MspI	CCGG	3 cut(s)	789, 1119, 1446
MspR9I	CCNGG	2 cut(s)	1004, 1490
MvaI	CCWGG	2 cut(s)	1004, 1490
MwoI	GCNNNNNNNGC	1 cut(s)	459
NcoI	CCATGG	3 cut(s)	84, 375, 1029
NdeII	GATC	5 cut(s)	1085, 1228, 1237, 1252, 1372
NmuCI	GTSAC	2 cut(s)	163, 1523
NspI	RCATGY	1 cut(s)	289
OliI	CACNNNNGTG	1 cut(s)	1119
PagI	TCATGA	1 cut(s)	1249
PciSI	GCTCTTC	1 cut(s)	469
PfeI	GAWTC	1 cut(s)	899
PflMI	CCANNNNNTGG	2 cut(s)	85, 1035
PinAI	ACCGGT	1 cut(s)	1118
PleI	GAGTC	2 cut(s)	215, 1563
PpsI	GAGTC	2 cut(s)	215, 1563
Psp6I	CCWGG	2 cut(s)	1002, 1488
PspGI	CCWGG	2 cut(s)	1002, 1488
PstNI	CAGNNNCTG	1 cut(s)	266
PsuI	RGATCY	2 cut(s)	1085, 1372
RsaI	GTAC	2 cut(s)	1008, 1392
RsaNI	GTAC	2 cut(s)	1007, 1391
RseI	CAYNNNNRTG	6 cut(s)	332, 344, 374, 413, 1119, 1178
SalI	GTCGAC	1 cut(s)	1133
SapI	GCTCTTC	1 cut(s)	469
SaqAI	TTAA	5 cut(s)	332, 447, 567, 1052, 1062
Sau3AI	GATC	5 cut(s)	1085, 1228, 1237, 1252, 1372
SchI	GAGTC	2 cut(s)	215, 1563
ScrFI	CCNGG	2 cut(s)	1004, 1490
SduI	GDGCHC	1 cut(s)	425
SfcI	CTRYAG	2 cut(s)	1218, 1450
SgrAI	CRCCGGYG	1 cut(s)	1118
SmiMI	CAYNNNNRTG	6 cut(s)	332, 344, 374, 413, 1119, 1178
SmlI	CTYRAG	6 cut(s)	194, 733, 813, 850, 1051, 1571
SmoI	CTYRAG	6 cut(s)	194, 733, 813, 850, 1051, 1571
SpeI	ACTAGT	1 cut(s)	151
SsiI	CCGC	3 cut(s)	477, 1155, 1215
SspI	AATATT	1 cut(s)	499
SspMI	CTAG	7 cut(s)	65, 152, 234, 602, 644, 957, 1337
StyD4I	CCNGG	2 cut(s)	1002, 1488
StyI	CCWWGG	5 cut(s)	84, 233, 375, 616, 1029
TaaI	ACNGT	5 cut(s)	277, 295, 721, 988, 1102
TaiI	ACGT	2 cut(s)	585, 672
TaqI	TCGA	4 cut(s)	112, 281, 1134, 1231
TatI	WGTACW	1 cut(s)	1390
TfiI	GAWTC	1 cut(s)	899
Tru1I	TTAA	5 cut(s)	332, 447, 567, 1052, 1062
Tru9I	TTAA	5 cut(s)	332, 447, 567, 1052, 1062
TscAI	CASTG	1 cut(s)	1423
TseFI	GTSAC	2 cut(s)	163, 1523
Tsp45I	GTSAC	2 cut(s)	163, 1523
TspGWI	ACGGA	2 cut(s)	1364, 1494
TspRI	CASTG	1 cut(s)	1423
Van91I	CCANNNNNTGG	2 cut(s)	85, 1035
Vha464I	CTTAAG	1 cut(s)	1051
XapI	RAATTY	5 cut(s)	238, 527, 559, 879, 1577
XceI	RCATGY	1 cut(s)	289
XcmI	CCANNNNNNNNNTGG	2 cut(s)	298, 1079
XmaJI	CCTAGG	1 cut(s)	233
XmiI	GTMKAC	1 cut(s)	1134
XspI	CTAG	7 cut(s)	65, 152, 234, 602, 644, 957, 1337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.