Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002671

Physical Location & Seq

Genomic Coordinates Reverse (-)

35417795 .. 35441982

Gene Structure 24188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0304200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGAAGGTTGTTGCTGCATATCTTCTGGCTGTTTTGGGAGGGAACACCAGCCCCTCAGCTGATGATGTGAAGAATATTCTTAGCTCAGTTGGAGCTGAAGCTGATGGTGATAGGATTGAGTTGCTATTGTCCCAAGTAAAGGGCAAAGATATTACTGAGCTAATTGCGTCTGGAAGGGAGAAGTTGGCATCTGTTCCCTCTGGGGGTGGTGCAGTTGCCGTTGCTGCACCTGCAGCTGGTGGTGGTGGTGGAGCAGCTCCTGCTGCTGCTGAGCAGAAAAAGGAGGAGAAGGTAGAAGAGAAGGAAGAGTCTGATGATGATATGGGTTTCAGCCTTTTCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006950 GO:0006970 GO:0008150 GO:0008324 GO:0009628 GO:0009651 GO:0015075 GO:0015077 GO:0015081 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0035725 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TrkH

Protein Analysis

114

Amino Acids

11.39

Weight (kDa)

4.42

Isoelectric Point (pI)

49.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	17 - 113	5.4e-27	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10310
fragaria_vesca	FvH4_4g06400 FvH4_4g06412 FvH4_4g06420 FvH4_4g06420 FvH4_4g06420 FvH4_4g06420
malus_domestica	MD16G1240400.v1.1
prunus_persica	Prupe.1G066800_v2.0.a1 Prupe.1G067100_v2.0.a1
pyrus_communis	pycom16g20110
rosa_chinensis	RchiOBHm_Chr4g0398141 RchiOBHm_Chr4g0398151
rosa_laevigata	RLG00000009382 RLG00000009383 RLG00000035139
rosa_multiflora	Rmu_sc0002035.1_g000011 Rmu_sc0002378.1_g000014 Rmu_sc0002378.1_g000025 Rmu_sc0008195.1_g000011 Rmu_sc0023295.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023290 Rroxscaffold_5G00343040 Rroxscaffold_5G00343070
rosa_rugosa	Rorug04G0006300 Rorug04G0006600 Rorug05G0304200
rosa_samantha	Rh4AG083400 Rh4AG083500 Rh4BG081100 Rh4BG081300 Rh4CG090400 Rh4CG090600 Rh4DG076000 Rh4DG076300 Rh5BG384700 Rh5DG398100
rosa_wichuraiana	Rw4G006930 Rw4G006940 Rw5G035170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	238
Acc36I	ACCTGC	1 cut(s)	238
AcuI	CTGAAG	1 cut(s)	117
AfiI	CCNNNNNNNGG	3 cut(s)	139, 203, 236
AluBI	AGCT	7 cut(s)	59, 84, 95, 101, 160, 236, 257
AluI	AGCT	7 cut(s)	59, 84, 95, 101, 160, 236, 257
AlwNI	CAGNNNCTG	1 cut(s)	260
ApeKI	GCWGC	6 cut(s)	14, 224, 233, 254, 263, 266
AsuHPI	GGTGA	1 cut(s)	119
BbvCI	CCTCAGC	1 cut(s)	55
BbvI	GCAGC	5 cut(s)	211, 245, 250, 253, 266
BccI	CCATC	1 cut(s)	98
BceAI	ACGGC	1 cut(s)	203
BfmI	CTRYAG	1 cut(s)	231
BfuAI	ACCTGC	1 cut(s)	238
BisI	GCNGC	6 cut(s)	15, 225, 234, 255, 264, 267
BlpI	GCTNAGC	1 cut(s)	270
BlsI	GCNGC	6 cut(s)	16, 226, 235, 256, 265, 268
BmsI	GCATC	1 cut(s)	197
Bpu10I	CCTNAGC	1 cut(s)	55
Bpu1102I	GCTNAGC	1 cut(s)	270
Bsc4I	CCNNNNNNNGG	3 cut(s)	139, 203, 236
BseLI	CCNNNNNNNGG	3 cut(s)	139, 203, 236
BseMII	CTCAG	4 cut(s)	69, 99, 147, 261
BseRI	GAGGAG	1 cut(s)	299
BseXI	GCAGC	5 cut(s)	211, 245, 250, 253, 266
BsgI	GTGCAG	2 cut(s)	210, 231
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	3 cut(s)	139, 203, 236
BsmFI	GGGAC	1 cut(s)	115
Bsp1720I	GCTNAGC	1 cut(s)	270
BspCNI	CTCAG	4 cut(s)	68, 98, 148, 262
BspMAI	CTGCAG	1 cut(s)	235
BspMI	ACCTGC	1 cut(s)	238
Bst6I	CTCTTC	2 cut(s)	291, 300
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstDEI	CTNAG	5 cut(s)	55, 80, 85, 156, 270
BstMWI	GCNNNNNNNGC	5 cut(s)	224, 230, 233, 260, 263
BstSFI	CTRYAG	1 cut(s)	231
BstV1I	GCAGC	5 cut(s)	211, 245, 250, 253, 266
BveI	ACCTGC	1 cut(s)	238
CaiI	CAGNNNCTG	1 cut(s)	260
CseI	GACGC	1 cut(s)	156
DdeI	CTNAG	5 cut(s)	55, 80, 85, 156, 270
Eam1104I	CTCTTC	2 cut(s)	291, 300
EarI	CTCTTC	2 cut(s)	291, 300
Eco57I	CTGAAG	1 cut(s)	117
FaiI	YATR	2 cut(s)	19, 323
FaqI	GGGAC	1 cut(s)	115
Fnu4HI	GCNGC	6 cut(s)	15, 225, 234, 255, 264, 267
Fsp4HI	GCNGC	6 cut(s)	15, 225, 234, 255, 264, 267
GluI	GCNGC	6 cut(s)	15, 225, 234, 255, 264, 267
HgaI	GACGC	1 cut(s)	156
HinfI	GANTC	1 cut(s)	308
HphI	GGTGA	1 cut(s)	119
Hpy188I	TCNGA	1 cut(s)	313
Hpy188III	TCNNGA	1 cut(s)	171
HpyAV	CCTTC	3 cut(s)	168, 283, 295
HpyCH4V	TGCA	4 cut(s)	17, 212, 227, 233
HpyF10VI	GCNNNNNNNGC	5 cut(s)	224, 230, 233, 260, 263
HpyF3I	CTNAG	5 cut(s)	55, 80, 85, 156, 270
LmnI	GCTCC	3 cut(s)	92, 251, 262
LpnPI	CCDG	7 cut(s)	11, 61, 156, 186, 222, 243, 273
Lsp1109I	GCAGC	5 cut(s)	211, 245, 250, 253, 266
LweI	GCATC	1 cut(s)	197
MboII	GAAGA	4 cut(s)	14, 82, 308, 317
MluCI	AATT	1 cut(s)	162
MlyI	GAGTC	1 cut(s)	317
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	4 cut(s)	32, 64, 208, 277
MspA1I	CMGCKG	2 cut(s)	59, 236
MwoI	GCNNNNNNNGC	5 cut(s)	224, 230, 233, 260, 263
PaqCI	CACCTGC	1 cut(s)	238
PkrI	GCNGC	6 cut(s)	16, 226, 235, 256, 265, 268
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
PstI	CTGCAG	1 cut(s)	235
PstNI	CAGNNNCTG	1 cut(s)	260
PvuII	CAGCTG	2 cut(s)	59, 236
SatI	GCNGC	6 cut(s)	15, 225, 234, 255, 264, 267
SchI	GAGTC	1 cut(s)	317
SfaNI	GCATC	1 cut(s)	197
SfcI	CTRYAG	1 cut(s)	231
SgeI	CNNG	8 cut(s)	38, 60, 146, 183, 213, 242, 249, 272
Sse9I	AATT	1 cut(s)	162
SspI	AATATT	1 cut(s)	76
TaqI	TCGA	1 cut(s)	339
TasI	AATT	1 cut(s)	162
TseI	GCWGC	6 cut(s)	14, 224, 233, 254, 263, 266
TspDTI	ATGAA	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.