Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002671

Physical Location & Seq

Genomic Coordinates Reverse (-)

12281962 .. 12284144

Gene Structure 2183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00343070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1623 bp

ATGAACAACGTTTTTGTTCCTTGTCGTAGGAAATTAGAGGGCATTTCATGCATTCACAAACTCCCTTGCATCCGCCAATCTTCTTGTAAAGGTCTAATTCGTTCACTGCTTCGTTTCCTACTCTTCCTTTTCAATCCTTTCATTATCGAACTTGTTTACTTTTTAATGGTCTCTGTCCTGGGTTATTTGGCTTTGAGGGTCACAAAACCAAGAACTAGAACTTCCTTTAGGCCTAAGGATTTTGATTTGTTCTTCACATCTGTGTCTTCCACAACAGTATCAAGCATGTCAACTGTAGAAATGGAGGTCTTTTCAAACACCCAACTCATCATTATGACCATTTTGATGCTAGCGGGTGGAGAGGTTTTCACTTCCTTGCTTGGACTTCAAATTCCAAAGTCCAAGATTGCCAAATTTCATGATAACAAAGTTGATGTAGAACTCAACTCTTCTAATAAGGCCTCCTTCGATCGAATAGAGTTAGGTTTGGTTACCCTTTCACAGTTAGAGAGTGAGCAGAAACCTAACATTCATAATGGTTTAAAAACCTTTGACAAGGATATCAAGTACAAGTCTATTAGGTGTCTGGCCTATGTGGTTTTAGGTTATCTTCTAGTGGTTCATATAGGTGGTTCCAGTTTAGTTTCATTGTACATTATCCTTGTTCCAAGTGCAAGACAAGTACTCAAAAACAAAGGCATTGAAATCCAAACCTTTGCTGTTTTCACCACGGTTTCCACCTTTGCAAACTGTGGTTTTGTCCCCACAAACGAGAATATGATCATTTTCAAGAACAATTCTGGGCTTTTACTTCTTCTAATTCCCCAAATCCTTCTTGGAAACACCTTATATCCCGTGATCCTTCGATTTGTGATTTGGGGTTTGGAGAAAATCACAAGGAGGGTGGAGTTCAGTTACATATTGAAGAATCATAATGAATTGGGTTACAGTCATATGCTATCTGGTCTTCATTCTATTCTTCTACTTGCCACTGTCTTGGGGTTCATAGCAGTTCAGCTGATACTATTTTGTGCCATGGAGTGGAAATCTGAAGCCATGGATGGTCTGAGTGGCTATCAGAAATTTGTGGCGTCATTGTTTCAAACGGTGAATTCCAGGCATGCTGGTGAATCGGTTGTTGATCTCTCCATCATCTCTCCTGCAATCTTGGTGCTATTTGTCTTGATGATGTATCTTCCACCGTATACTACATTTGATCCAGCAATTGGTGGTTGTCAAGAAGGTGATGCTTCAGGAAAAGAAGAAATTCGAAATCAAAGAAAGACTTTGCTGGAGTCTCTAATATTCTCACAGCTGACTTATTTAACCATCTTTGTCATACTTGTTTGCATCACAGAGAGACAAAAGATGATGGAAGACCCCCTCAACTTCAATGTGTTAAATGTTGTCGTAGAAGTAATAAGTGCATATGGAAATGTTGGGTTTACAACTGGCTACAGTTGTAAACGTCGACTGAAGGCGGAGGGTGATTGTATAGACAAATGGTACGGTTTGGTTGGAAGATTTAGTAGTGAAGGAAAGTTCATCCTCATTCTTGTCATGTTCTTTGGAAGGCTAAAGAAATTCAGTATGAAGCAGGGTAAAGCATGGAAGCTATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006950 GO:0006970 GO:0008150 GO:0008324 GO:0009628 GO:0009651 GO:0015075 GO:0015077 GO:0015081 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0035725 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TrkH

Protein Analysis

540

Amino Acids

60.78

Weight (kDa)

9.31

Isoelectric Point (pI)

40.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TrkH	PF02386	183 - 399	1.5e-26	Cation transport protein
TrkH	PF02386	426 - 530	1.6e-07	Cation transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10310
fragaria_vesca	FvH4_4g06400 FvH4_4g06412 FvH4_4g06420 FvH4_4g06420 FvH4_4g06420 FvH4_4g06420
malus_domestica	MD16G1240400.v1.1
prunus_persica	Prupe.1G066800_v2.0.a1 Prupe.1G067100_v2.0.a1
pyrus_communis	pycom16g20110
rosa_chinensis	RchiOBHm_Chr4g0398141 RchiOBHm_Chr4g0398151
rosa_laevigata	RLG00000009382 RLG00000009383 RLG00000035139
rosa_multiflora	Rmu_sc0002035.1_g000011 Rmu_sc0002378.1_g000014 Rmu_sc0002378.1_g000025 Rmu_sc0008195.1_g000011 Rmu_sc0023295.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023290 Rroxscaffold_5G00343040 Rroxscaffold_5G00343070
rosa_rugosa	Rorug04G0006300 Rorug04G0006600 Rorug05G0304200
rosa_samantha	Rh4AG083400 Rh4AG083500 Rh4BG081100 Rh4BG081300 Rh4CG090400 Rh4CG090600 Rh4DG076000 Rh4DG076300 Rh5BG384700 Rh5DG398100
rosa_wichuraiana	Rw4G006930 Rw4G006940 Rw5G035170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	1041, 1226
AccI	GTMKAC	2 cut(s)	1205, 1471
AciI	CCGC	3 cut(s)	73, 353, 1481
AclI	AACGTT	1 cut(s)	9
AclWI	GGATC	2 cut(s)	853, 1211
AcsI	RAATTY	6 cut(s)	390, 413, 1082, 1111, 1266, 1583
AcuI	CTGAAG	3 cut(s)	1071, 1236, 1496
AcyI	GRCGYC	1 cut(s)	1091
AfaI	GTAC	4 cut(s)	569, 653, 684, 1508
AfiI	CCNNNNNNNGG	2 cut(s)	1041, 1226
AgsI	TTSAA	8 cut(s)	133, 315, 389, 704, 790, 925, 1103, 1393
AjnI	CCWGG	2 cut(s)	177, 1115
AleI	CACNNNNGTG	1 cut(s)	260
AluBI	AGCT	3 cut(s)	1018, 1315, 1615
AluI	AGCT	3 cut(s)	1018, 1315, 1615
Alw26I	GTCTC	3 cut(s)	175, 1302, 1354
AlwI	GGATC	2 cut(s)	853, 1211
AoxI	GGCC	3 cut(s)	230, 459, 588
ApoI	RAATTY	6 cut(s)	390, 413, 1082, 1111, 1266, 1583
Asp700I	GAANNNNTTC	1 cut(s)	1266
AsuHPI	GGTGA	5 cut(s)	718, 1120, 1139, 1256, 1499
AsuII	TTCGAA	1 cut(s)	1270
AsuNHI	GCTAGC	1 cut(s)	349
AxyI	CCTNAGG	1 cut(s)	234
BaeI	ACNNNNGTAYC	2 cut(s)	261, 294
BbsI	GAAGAC	3 cut(s)	258, 959, 1383
BccI	CCATC	4 cut(s)	1055, 1157, 1337, 1366
BciT130I	CCWGG	2 cut(s)	179, 1117
BclI	TGATCA	1 cut(s)	780
BcoDI	GTCTC	3 cut(s)	175, 1302, 1354
BfaI	CTAG	3 cut(s)	216, 350, 614
BfmI	CTRYAG	2 cut(s)	294, 1456
BmcAI	AGTACT	1 cut(s)	684
Bme1390I	CCNGG	2 cut(s)	179, 1117
BmiI	GGNNCC	1 cut(s)	634
BmrFI	CCNGG	2 cut(s)	179, 1117
BmsI	GCATC	4 cut(s)	78, 336, 1237, 1359
BmtI	GCTAGC	1 cut(s)	353
BpiI	GAAGAC	3 cut(s)	258, 959, 1383
BpmI	CTGGAG	1 cut(s)	1313
Bpu14I	TTCGAA	1 cut(s)	1270
BsaHI	GRCGYC	1 cut(s)	1091
BsaI	GGTCTC	1 cut(s)	175
BsaJI	CCNNGG	4 cut(s)	178, 729, 1035, 1056
Bsc4I	CCNNNNNNNGG	2 cut(s)	1041, 1226
Bse1I	ACTGG	2 cut(s)	636, 1456
Bse21I	CCTNAGG	1 cut(s)	234
BseBI	CCWGG	2 cut(s)	179, 1117
BseDI	CCNNGG	4 cut(s)	178, 729, 1035, 1056
BseGI	GGATG	3 cut(s)	69, 1066, 1545
BseLI	CCNNNNNNNGG	2 cut(s)	1041, 1226
BseMII	CTCAG	1 cut(s)	1058
BseNI	ACTGG	2 cut(s)	636, 1456
Bsh1285I	CGRYCG	1 cut(s)	472
BshFI	GGCC	3 cut(s)	232, 461, 590
BsiEI	CGRYCG	1 cut(s)	472
BslFI	GGGAC	1 cut(s)	746
BslI	CCNNNNNNNGG	2 cut(s)	1041, 1226
BsmAI	GTCTC	3 cut(s)	175, 1302, 1354
BsmFI	GGGAC	1 cut(s)	746
BsmI	GAATGC	1 cut(s)	51
BsnI	GGCC	3 cut(s)	232, 461, 590
Bso31I	GGTCTC	1 cut(s)	175
Bsp119I	TTCGAA	1 cut(s)	1270
Bsp1407I	TGTACA	1 cut(s)	651
Bsp143I	GATC	5 cut(s)	469, 780, 858, 1141, 1216
Bsp19I	CCATGG	2 cut(s)	1035, 1056
BspACI	CCGC	3 cut(s)	73, 353, 1481
BspANI	GGCC	3 cut(s)	232, 461, 590
BspCNI	CTCAG	1 cut(s)	1059
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	1 cut(s)	634
BspOI	GCTAGC	1 cut(s)	353
BspPI	GGATC	2 cut(s)	853, 1211
BspT104I	TTCGAA	1 cut(s)	1270
BspTNI	GGTCTC	1 cut(s)	175
BsrGI	TGTACA	1 cut(s)	651
BsrI	ACTGG	2 cut(s)	636, 1456
BssECI	CCNNGG	4 cut(s)	178, 729, 1035, 1056
BssMI	GATC	5 cut(s)	469, 780, 858, 1141, 1216
BssNAI	GTATAC	1 cut(s)	1206
BssNI	GRCGYC	1 cut(s)	1091
BssT1I	CCWWGG	2 cut(s)	1035, 1056
Bst1107I	GTATAC	1 cut(s)	1206
Bst2UI	CCWGG	2 cut(s)	179, 1117
Bst6I	CTCTTC	2 cut(s)	128, 454
BstACI	GRCGYC	1 cut(s)	1091
BstAPI	GCANNNNNTGC	1 cut(s)	48
BstAUI	TGTACA	1 cut(s)	651
BstBI	TTCGAA	1 cut(s)	1270
BstC8I	GCNNGC	2 cut(s)	351, 1122
BstDEI	CTNAG	3 cut(s)	234, 1067, 1620
BstDSI	CCRYGG	3 cut(s)	729, 1035, 1056
BstEII	GGTNACC	1 cut(s)	490
BstF5I	GGATG	3 cut(s)	69, 1066, 1545
BstKTI	GATC	5 cut(s)	472, 783, 861, 1144, 1219
BstMAI	GTCTC	3 cut(s)	175, 1302, 1354
BstMBI	GATC	5 cut(s)	469, 780, 858, 1141, 1216
BstMCI	CGRYCG	1 cut(s)	472
BstMWI	GCNNNNNNNGC	1 cut(s)	48
BstNI	CCWGG	2 cut(s)	179, 1117
BstNSI	RCATGY	2 cut(s)	289, 1124
BstPI	GGTNACC	1 cut(s)	490
BstSCI	CCNGG	2 cut(s)	177, 1115
BstSFI	CTRYAG	2 cut(s)	294, 1456
BstV2I	GAAGAC	3 cut(s)	258, 959, 1383
BstXI	CCANNNNNNTGG	1 cut(s)	997
BstZ17I	GTATAC	1 cut(s)	1206
Bsu36I	CCTNAGG	1 cut(s)	234
BsuRI	GGCC	3 cut(s)	232, 461, 590
BtgI	CCRYGG	3 cut(s)	729, 1035, 1056
BtsCI	GGATG	3 cut(s)	69, 1066, 1545
BtsI	GCAGTG	1 cut(s)	104
BtsIMutI	CAGTG	2 cut(s)	104, 990
Cac8I	GCNNGC	2 cut(s)	351, 1122
CciI	TCATGA	1 cut(s)	418
CseI	GACGC	1 cut(s)	1080
Csp6I	GTAC	4 cut(s)	568, 652, 683, 1507
CspCI	CAANNNNNGTGG	2 cut(s)	885, 920
CviAII	CATG	8 cut(s)	48, 286, 419, 1036, 1057, 1121, 1561, 1608
CviQI	GTAC	4 cut(s)	568, 652, 683, 1507
DdeI	CTNAG	3 cut(s)	234, 1067, 1620
DpnI	GATC	5 cut(s)	471, 782, 860, 1143, 1218
DpnII	GATC	5 cut(s)	469, 780, 858, 1141, 1216
DraI	TTTAAA	1 cut(s)	543
Eam1104I	CTCTTC	2 cut(s)	128, 454
EarI	CTCTTC	2 cut(s)	128, 454
EciI	GGCGGA	2 cut(s)	62, 1496
Eco130I	CCWWGG	2 cut(s)	1035, 1056
Eco147I	AGGCCT	2 cut(s)	232, 461
Eco31I	GGTCTC	1 cut(s)	175
Eco32I	GATATC	1 cut(s)	562
Eco57I	CTGAAG	3 cut(s)	1071, 1236, 1496
Eco81I	CCTNAGG	1 cut(s)	234
Eco91I	GGTNACC	1 cut(s)	490
EcoO65I	GGTNACC	1 cut(s)	490
EcoRI	GAATTC	1 cut(s)	1111
EcoRII	CCWGG	2 cut(s)	177, 1115
EcoRV	GATATC	1 cut(s)	562
EcoT14I	CCWWGG	2 cut(s)	1035, 1056
EcoT22I	ATGCAT	1 cut(s)	53
ErhI	CCWWGG	2 cut(s)	1035, 1056
FaeI	CATG	8 cut(s)	51, 289, 422, 1039, 1060, 1124, 1564, 1611
FalI	AAGNNNNNCTT	4 cut(s)	449, 481, 1270, 1302
FaqI	GGGAC	1 cut(s)	746
FatI	CATG	8 cut(s)	47, 285, 418, 1035, 1056, 1120, 1560, 1607
FauI	CCCGC	1 cut(s)	346
FauNDI	CATATG	2 cut(s)	954, 1429
FbaI	TGATCA	1 cut(s)	780
FblI	GTMKAC	2 cut(s)	1205, 1471
FokI	GGATG	3 cut(s)	56, 1073, 1532
FspBI	CTAG	3 cut(s)	216, 350, 614
GsuI	CTGGAG	1 cut(s)	1313
HaeIII	GGCC	3 cut(s)	232, 461, 590
HgaI	GACGC	1 cut(s)	1080
Hin1I	GRCGYC	1 cut(s)	1091
Hin1II	CATG	8 cut(s)	51, 289, 422, 1039, 1060, 1124, 1564, 1611
HincII	GTYRAC	2 cut(s)	291, 1472
HindII	GTYRAC	2 cut(s)	291, 1472
HinfI	GANTC	3 cut(s)	928, 1130, 1295
HphI	GGTGA	5 cut(s)	718, 1120, 1139, 1256, 1499
Hpy166II	GTNNAC	7 cut(s)	104, 157, 291, 1206, 1446, 1466, 1472
Hpy188I	TCNGA	3 cut(s)	1051, 1068, 1080
Hpy188III	TCNNGA	5 cut(s)	419, 790, 1183, 1238, 1254
Hpy8I	GTNNAC	7 cut(s)	104, 157, 291, 1206, 1446, 1466, 1472
Hpy99I	CGWCG	1 cut(s)	1473
HpyAV	CCTTC	7 cut(s)	475, 842, 872, 1235, 1471, 1529, 1566
HpyCH4IV	ACGT	2 cut(s)	9, 1468
HpyCH4V	TGCA	7 cut(s)	51, 69, 674, 746, 1163, 1350, 1427
HpyF10VI	GCNNNNNNNGC	1 cut(s)	48
HpyF3I	CTNAG	3 cut(s)	234, 1067, 1620
HpySE526I	ACGT	2 cut(s)	9, 1468
Hsp92I	GRCGYC	1 cut(s)	1091
Hsp92II	CATG	8 cut(s)	51, 289, 422, 1039, 1060, 1124, 1564, 1611
Ksp22I	TGATCA	1 cut(s)	780
Kzo9I	GATC	5 cut(s)	469, 780, 858, 1141, 1216
LweI	GCATC	4 cut(s)	78, 336, 1237, 1359
MaeI	CTAG	3 cut(s)	216, 350, 614
MaeII	ACGT	2 cut(s)	9, 1468
MaeIII	GTNAC	4 cut(s)	199, 490, 914, 944
MalI	GATC	5 cut(s)	471, 782, 860, 1143, 1218
MboI	GATC	5 cut(s)	469, 780, 858, 1141, 1216
MfeI	CAATTG	1 cut(s)	1224
MlyI	GAGTC	1 cut(s)	1304
MmeI	TCCRAC	1 cut(s)	1498
MnlI	CCTC	9 cut(s)	31, 189, 298, 355, 472, 894, 1394, 1477, 1559
Mph1103I	ATGCAT	1 cut(s)	53
MroXI	GAANNNNTTC	1 cut(s)	1266
MseI	TTAA	4 cut(s)	164, 542, 1325, 1400
MslI	CAYNNNNRTG	5 cut(s)	260, 332, 344, 627, 1125
MspA1I	CMGCKG	2 cut(s)	1018, 1315
MspR9I	CCNGG	2 cut(s)	179, 1117
MunI	CAATTG	1 cut(s)	1224
Mva1269I	GAATGC	1 cut(s)	51
MvaI	CCWGG	2 cut(s)	179, 1117
MwoI	GCNNNNNNNGC	1 cut(s)	48
NcoI	CCATGG	2 cut(s)	1035, 1056
NdeI	CATATG	2 cut(s)	954, 1429
NdeII	GATC	5 cut(s)	469, 780, 858, 1141, 1216
NheI	GCTAGC	1 cut(s)	349
NlaIII	CATG	8 cut(s)	51, 289, 422, 1039, 1060, 1124, 1564, 1611
NlaIV	GGNNCC	1 cut(s)	634
NmuCI	GTSAC	1 cut(s)	199
NsiI	ATGCAT	1 cut(s)	53
NspI	RCATGY	2 cut(s)	289, 1124
NspV	TTCGAA	1 cut(s)	1270
OliI	CACNNNNGTG	1 cut(s)	260
PaeI	GCATGC	1 cut(s)	1124
PagI	TCATGA	1 cut(s)	418
PceI	AGGCCT	2 cut(s)	232, 461
PctI	GAATGC	1 cut(s)	51
PdmI	GAANNNNTTC	1 cut(s)	1266
PfeI	GAWTC	2 cut(s)	928, 1130
PflMI	CCANNNNNTGG	2 cut(s)	1041, 1226
Ple19I	CGATCG	1 cut(s)	472
PleI	GAGTC	1 cut(s)	1303
PpsI	GAGTC	1 cut(s)	1303
Psp1406I	AACGTT	1 cut(s)	9
Psp6I	CCWGG	2 cut(s)	177, 1115
PspEI	GGTNACC	1 cut(s)	490
PspGI	CCWGG	2 cut(s)	177, 1115
PspN4I	GGNNCC	1 cut(s)	634
PvuI	CGATCG	1 cut(s)	472
PvuII	CAGCTG	2 cut(s)	1018, 1315
RsaI	GTAC	4 cut(s)	569, 653, 684, 1508
RsaNI	GTAC	4 cut(s)	568, 652, 683, 1507
RseI	CAYNNNNRTG	5 cut(s)	260, 332, 344, 627, 1125
SalI	GTCGAC	1 cut(s)	1470
SaqAI	TTAA	4 cut(s)	164, 542, 1325, 1400
Sau3AI	GATC	5 cut(s)	469, 780, 858, 1141, 1216
ScaI	AGTACT	1 cut(s)	684
SchI	GAGTC	1 cut(s)	1304
ScrFI	CCNGG	2 cut(s)	179, 1117
SfaNI	GCATC	4 cut(s)	78, 336, 1237, 1359
SfcI	CTRYAG	2 cut(s)	294, 1456
SfuI	TTCGAA	1 cut(s)	1270
SmiMI	CAYNNNNRTG	5 cut(s)	260, 332, 344, 627, 1125
SphI	GCATGC	1 cut(s)	1124
SseBI	AGGCCT	2 cut(s)	232, 461
SsiI	CCGC	3 cut(s)	73, 353, 1481
SspI	AATATT	1 cut(s)	1305
SspMI	CTAG	3 cut(s)	216, 350, 614
StuI	AGGCCT	2 cut(s)	232, 461
StyD4I	CCNGG	2 cut(s)	177, 1115
StyI	CCWWGG	2 cut(s)	1035, 1056
TaiI	ACGT	2 cut(s)	12, 1471
TaqI	TCGA	6 cut(s)	147, 468, 472, 865, 1270, 1471
TatI	WGTACW	3 cut(s)	567, 651, 682
TfiI	GAWTC	2 cut(s)	928, 1130
Tru1I	TTAA	4 cut(s)	164, 542, 1325, 1400
Tru9I	TTAA	4 cut(s)	164, 542, 1325, 1400
TscAI	CASTG	2 cut(s)	111, 997
TseFI	GTSAC	1 cut(s)	199
Tsp45I	GTSAC	1 cut(s)	199
TspRI	CASTG	2 cut(s)	111, 997
Van91I	CCANNNNNTGG	2 cut(s)	1041, 1226
XapI	RAATTY	6 cut(s)	390, 413, 1082, 1111, 1266, 1583
XceI	RCATGY	2 cut(s)	289, 1124
XcmI	CCANNNNNNNNNTGG	1 cut(s)	833
XmiI	GTMKAC	2 cut(s)	1205, 1471
XmnI	GAANNNNTTC	1 cut(s)	1266
XspI	CTAG	3 cut(s)	216, 350, 614
ZrmI	AGTACT	1 cut(s)	684
Zsp2I	ATGCAT	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.