Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002671

Physical Location & Seq

Genomic Coordinates Reverse (-)

5699805 .. 5702347

Gene Structure 2543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g06412.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGCAACACATTCCTCCATTATTCCGCTTCTTATTATTTCATGCCAATCCTTTCTATACCCACCTTCTTTATCATGTAATTATCTCTGTGCTGGGTTATGTTGCTCTGAGGGTCACAAACCCGAGAACTAGCAGGCCAAATGACTTTGATTTGTTCTTCACTTCTGTTTCGGCCGCGACGGTCTCAAGCATGTCGACAGTGGAAATGGAGGTCTTCTCAAACGCTCAGCTTCTTATTATGACCATTCTCATGTTTGTGACTAGCGAGGTTTTCATTTCCATGCTCGAACTTCAAGTCACAAGGTCCAAAATTTCCAAATTCCATGAACAATCTTCTCATCAACTGGAGATGGGGTTAGACGTCACCGGTGATGCCCTCGATAATGCCCTAGAATTGGCAATTCCAAGTGCAAGACAAGTACTCATCCACAAAGGCATTGGTCTCCAAACATTTGCAGTTTTCACCACGGTTTCCTCCTTCTCAAACTGCGGATTTATCCCCACAAACGAGAACATGATCGTTTTCAGGAACAACTCCGGGCTCTTACTTGTTCTGATTCCGCAAATCCTTCTCGGAAACACATTATATCCGGCTTGCCTGCGTTTTCTGATCTGGGTTTTGGAGAAGAGCACAAGGAGGTCTGAATTTGGTTACCTGTTGAAGAATTATAAGGATTTAGGGTTCGGTCATTTGCTATCTGGTCTTGATTCTTGTCTTCTGGTCCTTACTGCCTTCTGCTTCACAGCAGTTCAGGTTGTACTGTTTTGTGTAATGGAGAGGAAATCTGAAGCTATGGATGGTCTGAATGGCTATCAGAAGTTTGTGGCCTCTGTCTTTCAGTCGGTGAATTCAAGGCATGCGGGCGAGTCAATTGTTGATATTTCCCTTCTCACTCCTGCAATCTTGGGACTCCTTGTGGTTATGATGTATCTTCCGGCATACACTAGATGTATGCCAATAAGCAATGGTAATGAAGAAGTGAAAGAAAAATCCAGAAAGCCTGTAGTGGAGTATCAAATACTTTCACAAGTTTCTTGTCTAGCGATCTTTGTCATACTTATTTGCATTACAGAAGGAAAGAAGATGAAGAACGATCCCCTTAACTTCAACGTGTTCAATATCATCATAGAAGTAATAAGTGCATATGGGAATGTGGGAATGACAACAGGCTATAGTTGTAAACGTCAACTGAAATCAGAGAGTGCTTCTTGTAAAGATGCGTGGTATGGATTTGTTGGAAGGTGGAGTATGGAAGGACAATTCATCCTCATTCTTGTCATGTTTTTTGGAAGGCTCAAGAAATATGGTCCCAAACGGGGTAAGGCTTGGAAGGTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006950 GO:0006970 GO:0008150 GO:0008324 GO:0009628 GO:0009651 GO:0015075 GO:0015077 GO:0015081 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0035725 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TrkH

Protein Analysis

447

Amino Acids

50.06

Weight (kDa)

8.89

Isoelectric Point (pI)

40.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TrkH	PF02386	151 - 396	3.7e-32	Cation transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10310
fragaria_vesca	FvH4_4g06400 FvH4_4g06412 FvH4_4g06420 FvH4_4g06420 FvH4_4g06420 FvH4_4g06420
malus_domestica	MD16G1240400.v1.1
prunus_persica	Prupe.1G066800_v2.0.a1 Prupe.1G067100_v2.0.a1
pyrus_communis	pycom16g20110
rosa_chinensis	RchiOBHm_Chr4g0398141 RchiOBHm_Chr4g0398151
rosa_laevigata	RLG00000009382 RLG00000009383 RLG00000035139
rosa_multiflora	Rmu_sc0002035.1_g000011 Rmu_sc0002378.1_g000014 Rmu_sc0002378.1_g000025 Rmu_sc0008195.1_g000011 Rmu_sc0023295.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023290 Rroxscaffold_5G00343040 Rroxscaffold_5G00343070
rosa_rugosa	Rorug04G0006300 Rorug04G0006600 Rorug05G0304200
rosa_samantha	Rh4AG083400 Rh4AG083500 Rh4BG081100 Rh4BG081300 Rh4CG090400 Rh4CG090600 Rh4DG076000 Rh4DG076300 Rh5BG384700 Rh5DG398100
rosa_wichuraiana	Rw4G006930 Rw4G006940 Rw5G035170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	669
AatII	GACGTC	1 cut(s)	363
AccI	GTMKAC	1 cut(s)	194
AccII	CGCG	1 cut(s)	176
AciI	CCGC	5 cut(s)	25, 174, 489, 560, 860
AclWI	GGATC	1 cut(s)	1088
AcoI	YGGCCR	1 cut(s)	171
AcsI	RAATTY	4 cut(s)	309, 317, 644, 847
AcuI	CTGAAG	1 cut(s)	807
AcyI	GRCGYC	1 cut(s)	360
AfaI	GTAC	2 cut(s)	420, 759
AfiI	CCNNNNNNNGG	2 cut(s)	394, 1316
AflIII	ACRYGT	1 cut(s)	1110
AgeI	ACCGGT	1 cut(s)	365
AgsI	TTSAA	5 cut(s)	293, 661, 852, 1108, 1117
AloI	GAACNNNNNNTCC	2 cut(s)	665, 697
AluBI	AGCT	2 cut(s)	229, 791
AluI	AGCT	2 cut(s)	229, 791
Alw21I	GWGCWC	1 cut(s)	632
Alw26I	GTCTC	2 cut(s)	187, 446
AlwI	GGATC	1 cut(s)	1088
Ama87I	CYCGRG	1 cut(s)	121
AoxI	GGCC	3 cut(s)	134, 171, 825
ApoI	RAATTY	4 cut(s)	309, 317, 644, 847
ArsI	GACNNNNNNTTYG	2 cut(s)	279, 311
AsiGI	ACCGGT	1 cut(s)	365
AspS9I	GGNCC	3 cut(s)	303, 721, 1307
AsuC2I	CCSGG	1 cut(s)	538
AsuHPI	GGTGA	4 cut(s)	355, 380, 454, 856
AvaI	CYCGRG	1 cut(s)	121
AvaII	GGWCC	3 cut(s)	303, 721, 1307
BanII	GRGCYC	1 cut(s)	543
BbsI	GAAGAC	2 cut(s)	205, 707
Bbv12I	GWGCWC	1 cut(s)	632
BccI	CCATC	2 cut(s)	343, 791
BcnI	CCSGG	1 cut(s)	538
BcoDI	GTCTC	2 cut(s)	187, 446
BfaI	CTAG	5 cut(s)	129, 261, 389, 945, 1040
BfmI	CTRYAG	2 cut(s)	1002, 1171
BisI	GCNGC	1 cut(s)	174
BlpI	GCTNAGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	175
BmcAI	AGTACT	1 cut(s)	420
Bme1390I	CCNGG	1 cut(s)	538
Bme18I	GGWCC	3 cut(s)	303, 721, 1307
BmeT110I	CYCGRG	1 cut(s)	121
BmgT120I	GGNCC	3 cut(s)	303, 721, 1307
BmiI	GGNNCC	1 cut(s)	1309
BmrFI	CCNGG	1 cut(s)	538
BmsI	GCATC	2 cut(s)	361, 1207
BpiI	GAAGAC	2 cut(s)	205, 707
BplI	GAGNNNNNCTC	2 cut(s)	200, 232
BpmI	CTGGAG	1 cut(s)	365
Bpu1102I	GCTNAGC	1 cut(s)	225
BpuEI	CTTGAG	2 cut(s)	169, 1280
BpuMI	CCSGG	1 cut(s)	538
BsaHI	GRCGYC	1 cut(s)	360
BsaI	GGTCTC	2 cut(s)	187, 446
BsaJI	CCNNGG	1 cut(s)	465
BsaWI	WCCGGW	1 cut(s)	365
BsaXI	ACNNNNNCTCC	2 cut(s)	338, 368
Bsc4I	CCNNNNNNNGG	2 cut(s)	394, 1316
Bse118I	RCCGGY	1 cut(s)	365
Bse1I	ACTGG	1 cut(s)	348
Bse3DI	GCAATG	1 cut(s)	970
BseDI	CCNNGG	1 cut(s)	465
BseGI	GGATG	3 cut(s)	423, 802, 1263
BseLI	CCNNNNNNNGG	2 cut(s)	394, 1316
BseMI	GCAATG	1 cut(s)	970
BseMII	CTCAG	2 cut(s)	98, 239
BseNI	ACTGG	1 cut(s)	348
BseX3I	CGGCCG	1 cut(s)	171
BseYI	CCCAGC	1 cut(s)	91
Bsh1236I	CGCG	1 cut(s)	176
Bsh1285I	CGRYCG	1 cut(s)	174
BshFI	GGCC	3 cut(s)	136, 173, 827
BshTI	ACCGGT	1 cut(s)	365
BsiEI	CGRYCG	1 cut(s)	174
BsiHKAI	GWGCWC	1 cut(s)	632
BsiHKCI	CYCGRG	1 cut(s)	121
BsiSI	CCGG	4 cut(s)	366, 537, 590, 935
BslFI	GGGAC	2 cut(s)	921, 1293
BslI	CCNNNNNNNGG	2 cut(s)	394, 1316
BsmAI	GTCTC	2 cut(s)	187, 446
BsmFI	GGGAC	2 cut(s)	921, 1293
BsnI	GGCC	3 cut(s)	136, 173, 827
Bso31I	GGTCTC	2 cut(s)	187, 446
BsoBI	CYCGRG	1 cut(s)	121
Bsp1286I	GDGCHC	2 cut(s)	543, 632
Bsp143I	GATC	4 cut(s)	516, 609, 1044, 1093
Bsp1720I	GCTNAGC	1 cut(s)	225
BspACI	CCGC	5 cut(s)	25, 174, 489, 560, 860
BspANI	GGCC	3 cut(s)	136, 173, 827
BspCNI	CTCAG	2 cut(s)	99, 238
BspFNI	CGCG	1 cut(s)	176
BspLI	GGNNCC	1 cut(s)	1309
BspPI	GGATC	1 cut(s)	1088
BspQI	GCTCTTC	1 cut(s)	620
BspTNI	GGTCTC	2 cut(s)	187, 446
BsrDI	GCAATG	1 cut(s)	970
BsrFI	RCCGGY	1 cut(s)	365
BsrI	ACTGG	1 cut(s)	348
BssAI	RCCGGY	1 cut(s)	365
BssECI	CCNNGG	1 cut(s)	465
BssMI	GATC	4 cut(s)	516, 609, 1044, 1093
BssNI	GRCGYC	1 cut(s)	360
Bst4CI	ACNGT	4 cut(s)	181, 199, 469, 762
Bst6I	CTCTTC	1 cut(s)	620
BstACI	GRCGYC	1 cut(s)	360
BstC8I	GCNNGC	5 cut(s)	134, 595, 599, 858, 862
BstDEI	CTNAG	3 cut(s)	107, 225, 1338
BstDSI	CCRYGG	1 cut(s)	465
BstEII	GGTNACC	1 cut(s)	650
BstF5I	GGATG	3 cut(s)	423, 802, 1263
BstFNI	CGCG	1 cut(s)	176
BstKTI	GATC	4 cut(s)	519, 612, 1047, 1096
BstMAI	GTCTC	2 cut(s)	187, 446
BstMBI	GATC	4 cut(s)	516, 609, 1044, 1093
BstMCI	CGRYCG	1 cut(s)	174
BstNSI	RCATGY	2 cut(s)	193, 860
BstPI	GGTNACC	1 cut(s)	650
BstSCI	CCNGG	1 cut(s)	536
BstSFI	CTRYAG	2 cut(s)	1002, 1171
BstUI	CGCG	1 cut(s)	176
BstV2I	GAAGAC	2 cut(s)	205, 707
BstZI	CGGCCG	1 cut(s)	171
BsuRI	GGCC	3 cut(s)	136, 173, 827
BtgI	CCRYGG	1 cut(s)	465
BtsCI	GGATG	3 cut(s)	423, 802, 1263
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	5 cut(s)	134, 595, 599, 858, 862
Cfr10I	RCCGGY	1 cut(s)	365
Cfr13I	GGNCC	3 cut(s)	303, 721, 1307
Csp6I	GTAC	2 cut(s)	419, 758
CspAI	ACCGGT	1 cut(s)	365
CviAII	CATG	9 cut(s)	41, 74, 190, 250, 280, 323, 514, 857, 1279
CviQI	GTAC	2 cut(s)	419, 758
DdeI	CTNAG	3 cut(s)	107, 225, 1338
DpnI	GATC	4 cut(s)	518, 611, 1046, 1095
DpnII	GATC	4 cut(s)	516, 609, 1044, 1093
EaeI	YGGCCR	1 cut(s)	171
EagI	CGGCCG	1 cut(s)	171
Eam1104I	CTCTTC	1 cut(s)	620
EarI	CTCTTC	1 cut(s)	620
EclXI	CGGCCG	1 cut(s)	171
Eco24I	GRGCYC	1 cut(s)	543
Eco31I	GGTCTC	2 cut(s)	187, 446
Eco47I	GGWCC	3 cut(s)	303, 721, 1307
Eco52I	CGGCCG	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	807
Eco88I	CYCGRG	1 cut(s)	121
Eco91I	GGTNACC	1 cut(s)	650
EcoO65I	GGTNACC	1 cut(s)	650
EcoRI	GAATTC	1 cut(s)	847
EcoT38I	GRGCYC	1 cut(s)	543
FaeI	CATG	9 cut(s)	44, 77, 193, 253, 283, 326, 517, 860, 1282
FaqI	GGGAC	2 cut(s)	921, 1293
FatI	CATG	9 cut(s)	40, 73, 189, 249, 279, 322, 513, 856, 1278
FauI	CCCGC	1 cut(s)	853
FauNDI	CATATG	1 cut(s)	1144
FblI	GTMKAC	1 cut(s)	194
Fnu4HI	GCNGC	1 cut(s)	174
FokI	GGATG	3 cut(s)	410, 809, 1250
FriOI	GRGCYC	1 cut(s)	543
Fsp4HI	GCNGC	1 cut(s)	174
FspBI	CTAG	5 cut(s)	129, 261, 389, 945, 1040
GluI	GCNGC	1 cut(s)	174
GsaI	CCCAGC	1 cut(s)	95
GsuI	CTGGAG	1 cut(s)	365
HaeIII	GGCC	3 cut(s)	136, 173, 827
HapII	CCGG	4 cut(s)	366, 537, 590, 935
Hin1I	GRCGYC	1 cut(s)	360
Hin1II	CATG	9 cut(s)	44, 77, 193, 253, 283, 326, 517, 860, 1282
HincII	GTYRAC	2 cut(s)	195, 1187
HindII	GTYRAC	2 cut(s)	195, 1187
HinfI	GANTC	4 cut(s)	556, 707, 866, 909
HpaII	CCGG	4 cut(s)	366, 537, 590, 935
HphI	GGTGA	4 cut(s)	355, 380, 454, 856
Hpy166II	GTNNAC	3 cut(s)	195, 1181, 1187
Hpy188I	TCNGA	9 cut(s)	108, 555, 575, 609, 643, 787, 804, 816, 1198
Hpy188III	TCNNGA	4 cut(s)	526, 704, 993, 1297
Hpy8I	GTNNAC	3 cut(s)	195, 1181, 1187
Hpy99I	CGWCG	1 cut(s)	181
HpyCH4III	ACNGT	4 cut(s)	181, 199, 469, 762
HpyCH4IV	ACGT	3 cut(s)	360, 1110, 1183
HpyCH4V	TGCA	6 cut(s)	4, 410, 455, 899, 1065, 1142
HpyF3I	CTNAG	3 cut(s)	107, 225, 1338
HpySE526I	ACGT	3 cut(s)	360, 1110, 1183
Hsp92I	GRCGYC	1 cut(s)	360
Hsp92II	CATG	9 cut(s)	44, 77, 193, 253, 283, 326, 517, 860, 1282
Kzo9I	GATC	4 cut(s)	516, 609, 1044, 1093
LguI	GCTCTTC	1 cut(s)	620
LweI	GCATC	2 cut(s)	361, 1207
MaeI	CTAG	5 cut(s)	129, 261, 389, 945, 1040
MaeII	ACGT	3 cut(s)	360, 1110, 1183
MaeIII	GTNAC	5 cut(s)	112, 256, 295, 361, 650
MalI	GATC	4 cut(s)	518, 611, 1046, 1095
MboI	GATC	4 cut(s)	516, 609, 1044, 1093
MfeI	CAATTG	1 cut(s)	870
MhlI	GDGCHC	2 cut(s)	543, 632
MlyI	GAGTC	2 cut(s)	875, 903
MmeI	TCCRAC	1 cut(s)	1216
MseI	TTAA	1 cut(s)	1101
MslI	CAYNNNNRTG	3 cut(s)	248, 254, 278
MspI	CCGG	4 cut(s)	366, 537, 590, 935
MspR9I	CCNGG	1 cut(s)	538
MunI	CAATTG	1 cut(s)	870
MvnI	CGCG	1 cut(s)	176
NciI	CCSGG	1 cut(s)	538
NdeI	CATATG	1 cut(s)	1144
NdeII	GATC	4 cut(s)	516, 609, 1044, 1093
NlaIII	CATG	9 cut(s)	44, 77, 193, 253, 283, 326, 517, 860, 1282
NlaIV	GGNNCC	1 cut(s)	1309
NmuCI	GTSAC	4 cut(s)	112, 256, 295, 361
NspI	RCATGY	2 cut(s)	193, 860
PaeI	GCATGC	1 cut(s)	860
PciSI	GCTCTTC	1 cut(s)	620
PfeI	GAWTC	2 cut(s)	556, 707
PinAI	ACCGGT	1 cut(s)	365
PkrI	GCNGC	1 cut(s)	175
PleI	GAGTC	2 cut(s)	874, 903
PpsI	GAGTC	2 cut(s)	874, 903
PsiI	TTATAA	1 cut(s)	669
PspEI	GGTNACC	1 cut(s)	650
PspFI	CCCAGC	1 cut(s)	91
PspN4I	GGNNCC	1 cut(s)	1309
PspPI	GGNCC	3 cut(s)	303, 721, 1307
RsaI	GTAC	2 cut(s)	420, 759
RsaNI	GTAC	2 cut(s)	419, 758
RseI	CAYNNNNRTG	3 cut(s)	248, 254, 278
SalI	GTCGAC	1 cut(s)	193
SapI	GCTCTTC	1 cut(s)	620
SaqAI	TTAA	1 cut(s)	1101
SatI	GCNGC	1 cut(s)	174
Sau3AI	GATC	4 cut(s)	516, 609, 1044, 1093
Sau96I	GGNCC	3 cut(s)	303, 721, 1307
ScaI	AGTACT	1 cut(s)	420
SchI	GAGTC	2 cut(s)	875, 903
ScrFI	CCNGG	1 cut(s)	538
SduI	GDGCHC	2 cut(s)	543, 632
SfaNI	GCATC	2 cut(s)	361, 1207
SfcI	CTRYAG	2 cut(s)	1002, 1171
SgrAI	CRCCGGYG	1 cut(s)	365
SinI	GGWCC	3 cut(s)	303, 721, 1307
SmiMI	CAYNNNNRTG	3 cut(s)	248, 254, 278
SmlI	CTYRAG	2 cut(s)	184, 1295
SmoI	CTYRAG	2 cut(s)	184, 1295
SphI	GCATGC	1 cut(s)	860
SsiI	CCGC	5 cut(s)	25, 174, 489, 560, 860
SspMI	CTAG	5 cut(s)	129, 261, 389, 945, 1040
StyD4I	CCNGG	1 cut(s)	536
TaaI	ACNGT	4 cut(s)	181, 199, 469, 762
TaiI	ACGT	3 cut(s)	363, 1113, 1186
TaqI	TCGA	3 cut(s)	194, 285, 378
TaqII	GACCGA	1 cut(s)	674
TatI	WGTACW	2 cut(s)	418, 757
TauI	GCSGC	1 cut(s)	176
TfiI	GAWTC	2 cut(s)	556, 707
Tru1I	TTAA	1 cut(s)	1101
Tru9I	TTAA	1 cut(s)	1101
TscAI	CASTG	1 cut(s)	204
TseFI	GTSAC	4 cut(s)	112, 256, 295, 361
Tsp45I	GTSAC	4 cut(s)	112, 256, 295, 361
TspDTI	ATGAA	6 cut(s)	29, 262, 339, 987, 1100, 1252
TspRI	CASTG	1 cut(s)	204
VpaK11BI	GGWCC	3 cut(s)	303, 721, 1307
XapI	RAATTY	4 cut(s)	309, 317, 644, 847
XceI	RCATGY	2 cut(s)	193, 860
XcmI	CCANNNNNNNNNTGG	1 cut(s)	434
XmiI	GTMKAC	1 cut(s)	194
XspI	CTAG	5 cut(s)	129, 261, 389, 945, 1040
ZraI	GACGTC	1 cut(s)	361
ZrmI	AGTACT	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.