Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004229

Physical Location & Seq

Genomic Coordinates Reverse (-)

23464553 .. 23465052

Gene Structure 500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g20030.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGAGGACCATACTTGTCATAAGCGTTATTGTCTTTGTGTTGATGGTGGCATCTCTGCAAGCTGGTGCTAATCGGTTTGTTCTGAACGAGCGTCACTTGGCTCAGGTCAAGACCGACCCAAATCAGGGTCGAAGCGCTGAGGTTCTTAGTGGCGGTGCAAAAGACCAGTCCCAGTCTCAGCCCCGGACCACAAACAAGGGTAGCAGCAACAGCGATGCTAAGCATGATGTTCAAGCCGACGACAATGCAAATGAGAGTTATGATATTGGAAAGGCGCATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

95

Amino Acids

10.11

Weight (kDa)

6.82

Isoelectric Point (pI)

36.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004229)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20030 FvH4_4g20300
malus_domestica	MD16G1151900.v1.1
prunus_persica	Prupe.1G115400_v2.0.a1
rosa_laevigata	RLG00000007343 RLG00000008687 RLG00000013101 RLG00000036563
rosa_roxburghii	Rroxscaffold_1G00006070 Rroxscaffold_5G00352500 Rroxscaffold_5G00367720 Rroxscaffold_5G00367730
rosa_rugosa	Rorug04G0082500 Rorug04G0082600 Rorug04G0082700 Rorug04G0205600 Rorug04G0205700 Rorug05G0439500 Rorug05G0439600
rosa_samantha	Rh4AG147200 Rh4AG262400 Rh4AG262500 Rh4CG154000 Rh4CG280200 Rh4CG280500 Rh4DG141300 Rh4DG264300 Rh5AG496500 Rh5AG496600 Rh5BG517900 Rh5DG531400 Rh5DG531500
rosa_wichuraiana	Rw5G046060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	153
AfeI	AGCGCT	1 cut(s)	136
AfiI	CCNNNNNNNGG	2 cut(s)	124, 125
AgsI	TTSAA	1 cut(s)	233
AluBI	AGCT	1 cut(s)	62
AluI	AGCT	1 cut(s)	62
Alw26I	GTCTC	1 cut(s)	180
Aor51HI	AGCGCT	1 cut(s)	136
ApeKI	GCWGC	1 cut(s)	204
ArsI	GACNNNNNNTTYG	2 cut(s)	152, 184
AspLEI	GCGC	2 cut(s)	137, 277
AspS9I	GGNCC	2 cut(s)	6, 186
AsuC2I	CCSGG	1 cut(s)	184
AvaII	GGWCC	2 cut(s)	6, 186
BbvCI	CCTCAGC	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	216
BccI	CCATC	1 cut(s)	37
BcgI	CGANNNNNNTGC	2 cut(s)	227, 261
BcnI	CCSGG	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	180
BfoI	RGCGCY	1 cut(s)	138
BisI	GCNGC	1 cut(s)	205
BlpI	GCTNAGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	206
Bme1390I	CCNGG	1 cut(s)	184
Bme18I	GGWCC	2 cut(s)	6, 186
BmgT120I	GGNCC	2 cut(s)	6, 186
BmrFI	CCNGG	1 cut(s)	184
BmrI	ACTGGG	1 cut(s)	166
BmsI	GCATC	2 cut(s)	59, 205
BmuI	ACTGGG	1 cut(s)	166
Bpu10I	CCTNAGC	2 cut(s)	102, 138
Bpu1102I	GCTNAGC	1 cut(s)	219
BpuMI	CCSGG	1 cut(s)	184
BsaJI	CCNNGG	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 125
Bse1I	ACTGG	2 cut(s)	166, 172
BseDI	CCNNGG	1 cut(s)	182
BseLI	CCNNNNNNNGG	2 cut(s)	124, 125
BseMII	CTCAG	3 cut(s)	116, 129, 191
BseNI	ACTGG	2 cut(s)	166, 172
BseXI	GCAGC	1 cut(s)	216
BsiSI	CCGG	1 cut(s)	184
BslFI	GGGAC	1 cut(s)	154
BslI	CCNNNNNNNGG	2 cut(s)	124, 125
BsmAI	GTCTC	1 cut(s)	180
BsmFI	GGGAC	1 cut(s)	154
Bsp1720I	GCTNAGC	1 cut(s)	219
BspACI	CCGC	1 cut(s)	153
BspCNI	CTCAG	3 cut(s)	115, 130, 190
BsrI	ACTGG	2 cut(s)	166, 172
BssECI	CCNNGG	1 cut(s)	182
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	5 cut(s)	102, 138, 146, 177, 219
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	2 cut(s)	137, 277
BstMAI	GTCTC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	1 cut(s)	210
BstNSI	RCATGY	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	182
BstV1I	GCAGC	1 cut(s)	216
BtgZI	GCGATG	1 cut(s)	228
Cac8I	GCNNGC	1 cut(s)	60
CfoI	GCGC	2 cut(s)	137, 277
Cfr13I	GGNCC	2 cut(s)	6, 186
CseI	GACGC	1 cut(s)	80
CviAII	CATG	2 cut(s)	224, 278
CviJI	RGCY	4 cut(s)	62, 101, 181, 236
CviKI_1	RGCY	4 cut(s)	62, 101, 181, 236
DdeI	CTNAG	5 cut(s)	102, 138, 146, 177, 219
Eco47I	GGWCC	2 cut(s)	6, 186
Eco47III	AGCGCT	1 cut(s)	136
FaeI	CATG	2 cut(s)	227, 281
FaiI	YATR	5 cut(s)	11, 20, 225, 261, 279
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	2 cut(s)	223, 277
Fnu4HI	GCNGC	1 cut(s)	205
Fsp4HI	GCNGC	1 cut(s)	205
GlaI	GCGC	2 cut(s)	136, 276
GluI	GCNGC	1 cut(s)	205
HaeII	RGCGCY	1 cut(s)	138
HapII	CCGG	1 cut(s)	184
HgaI	GACGC	1 cut(s)	80
HhaI	GCGC	2 cut(s)	137, 277
Hin1II	CATG	2 cut(s)	227, 281
Hin6I	GCGC	2 cut(s)	135, 275
HinP1I	GCGC	2 cut(s)	135, 275
HpaII	CCGG	1 cut(s)	184
Hpy188I	TCNGA	1 cut(s)	84
Hpy188III	TCNNGA	1 cut(s)	109
Hpy99I	CGWCG	1 cut(s)	242
HpyCH4V	TGCA	3 cut(s)	58, 158, 248
HpyF10VI	GCNNNNNNNGC	1 cut(s)	210
HpyF3I	CTNAG	5 cut(s)	102, 138, 146, 177, 219
Hsp92II	CATG	2 cut(s)	227, 281
HspAI	GCGC	2 cut(s)	135, 275
LpnPI	CCDG	6 cut(s)	48, 89, 110, 179, 185, 197
Lsp1109I	GCAGC	1 cut(s)	216
LweI	GCATC	2 cut(s)	59, 205
MaeIII	GTNAC	1 cut(s)	92
MnlI	CCTC	1 cut(s)	133
MspI	CCGG	1 cut(s)	184
MspR9I	CCNGG	1 cut(s)	184
MwoI	GCNNNNNNNGC	1 cut(s)	210
NciI	CCSGG	1 cut(s)	184
NlaIII	CATG	2 cut(s)	227, 281
NmuCI	GTSAC	1 cut(s)	92
NspI	RCATGY	1 cut(s)	281
PkrI	GCNGC	1 cut(s)	206
PspPI	GGNCC	2 cut(s)	6, 186
SatI	GCNGC	1 cut(s)	205
Sau96I	GGNCC	2 cut(s)	6, 186
ScrFI	CCNGG	1 cut(s)	184
SetI	ASST	3 cut(s)	64, 108, 144
SfaNI	GCATC	2 cut(s)	59, 205
SinI	GGWCC	2 cut(s)	6, 186
SsiI	CCGC	1 cut(s)	153
StyD4I	CCNGG	1 cut(s)	182
TaqI	TCGA	1 cut(s)	130
TaqII	GACCGA	1 cut(s)	128
TseFI	GTSAC	1 cut(s)	92
TseI	GCWGC	1 cut(s)	204
Tsp45I	GTSAC	1 cut(s)	92
VpaK11BI	GGWCC	2 cut(s)	6, 186
XceI	RCATGY	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.