Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004229

Physical Location & Seq

Genomic Coordinates Forward (+)

23613688 .. 23616949

Gene Structure 3262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g20300.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAGGACCATACTTGTCATAAGCGTTATCGGCTTTGTGTTGATGGTGGCATCTCTGCAAGCTGCTGCTAATCGGTTTGTTCTGAACGAGCGTCACTTGGCTCAGGTCAAGACCGACCCAAATCAGGGTCGAAGCGCTGAGGTTCTTAGTGGCGGTGCAAAAGACCAGTCCCAGTCTCAGCCCCGGACCACAAACAAGGGTAGCAGCAACAGCGATGCTAAGCATGATGTTCAAGCCGACGACAATGCAAATGAGAGTTATGAGAGAAGGAAGACGAAGGCGAATGGGAGTCTCCCAACAAAGGAAACGAAGGCCATGTCTGTACGGGGAGGGACCAAAACGACGCCGCTTCAGGATACTCGACGATGTCGCTTCATGAGACCTTCTCCTCCAAAAAAACATGAGATCTCATCCTCCAATTTCAGTCCGGCCTGGACCAGCTCCTCCATGCTAATTCTTGCCGAAAATCTCGTTGACGGCGACTGCGACGGCGTCGAAGATGGATCCAAGGCCGCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

174

Amino Acids

18.68

Weight (kDa)

9.39

Isoelectric Point (pI)

51.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004229)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20030 FvH4_4g20300
malus_domestica	MD16G1151900.v1.1
prunus_persica	Prupe.1G115400_v2.0.a1
rosa_laevigata	RLG00000007343 RLG00000008687 RLG00000013101 RLG00000036563
rosa_roxburghii	Rroxscaffold_1G00006070 Rroxscaffold_5G00352500 Rroxscaffold_5G00367720 Rroxscaffold_5G00367730
rosa_rugosa	Rorug04G0082500 Rorug04G0082600 Rorug04G0082700 Rorug04G0205600 Rorug04G0205700 Rorug05G0439500 Rorug05G0439600
rosa_samantha	Rh4AG147200 Rh4AG262400 Rh4AG262500 Rh4CG154000 Rh4CG280200 Rh4CG280500 Rh4DG141300 Rh4DG264300 Rh5AG496500 Rh5AG496600 Rh5BG517900 Rh5DG531400 Rh5DG531500
rosa_wichuraiana	Rw5G046060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	153, 347, 513
AclWI	GGATC	2 cut(s)	498, 511
AcuI	CTGAAG	1 cut(s)	335
AcyI	GRCGYC	2 cut(s)	344, 492
AfaI	GTAC	1 cut(s)	324
AfeI	AGCGCT	1 cut(s)	136
AfiI	CCNNNNNNNGG	3 cut(s)	124, 125, 301
AgsI	TTSAA	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	431
AluBI	AGCT	2 cut(s)	62, 441
AluI	AGCT	2 cut(s)	62, 441
Alw26I	GTCTC	3 cut(s)	180, 296, 373
AlwI	GGATC	2 cut(s)	498, 511
Aor51HI	AGCGCT	1 cut(s)	136
AoxI	GGCC	3 cut(s)	312, 429, 510
ApeKI	GCWGC	3 cut(s)	62, 65, 204
ArsI	GACNNNNNNTTYG	4 cut(s)	152, 184, 302, 334
AspLEI	GCGC	1 cut(s)	137
AspS9I	GGNCC	4 cut(s)	6, 186, 333, 435
AsuC2I	CCSGG	1 cut(s)	184
AvaII	GGWCC	4 cut(s)	6, 186, 333, 435
BamHI	GGATCC	1 cut(s)	503
BbsI	GAAGAC	1 cut(s)	278
BbvCI	CCTCAGC	1 cut(s)	138
BbvI	GCAGC	3 cut(s)	49, 52, 216
BccI	CCATC	2 cut(s)	37, 494
BceAI	ACGGC	2 cut(s)	493, 505
BcgI	CGANNNNNNTGC	2 cut(s)	227, 261
BciT130I	CCWGG	1 cut(s)	433
BciVI	GTATCC	1 cut(s)	349
BcnI	CCSGG	1 cut(s)	184
BcoDI	GTCTC	3 cut(s)	180, 296, 373
BfoI	RGCGCY	1 cut(s)	138
BfuI	GTATCC	1 cut(s)	349
BglII	AGATCT	1 cut(s)	405
BisI	GCNGC	5 cut(s)	63, 66, 205, 347, 513
BlpI	GCTNAGC	1 cut(s)	219
BlsI	GCNGC	5 cut(s)	64, 67, 206, 348, 514
Bme1390I	CCNGG	2 cut(s)	184, 433
Bme18I	GGWCC	4 cut(s)	6, 186, 333, 435
BmgT120I	GGNCC	4 cut(s)	6, 186, 333, 435
BmiI	GGNNCC	2 cut(s)	334, 505
BmrFI	CCNGG	2 cut(s)	184, 433
BmrI	ACTGGG	1 cut(s)	166
BmsI	GCATC	2 cut(s)	59, 205
BmuI	ACTGGG	1 cut(s)	166
BpiI	GAAGAC	1 cut(s)	278
BplI	GAGNNNNNCTC	2 cut(s)	370, 402
Bpu10I	CCTNAGC	2 cut(s)	102, 138
Bpu1102I	GCTNAGC	1 cut(s)	219
BpuMI	CCSGG	1 cut(s)	184
BsaHI	GRCGYC	2 cut(s)	344, 492
BsaI	GGTCTC	1 cut(s)	373
BsaJI	CCNNGG	2 cut(s)	182, 507
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 125, 301
Bse1I	ACTGG	2 cut(s)	166, 172
BseBI	CCWGG	1 cut(s)	433
BseDI	CCNNGG	2 cut(s)	182, 507
BseGI	GGATG	1 cut(s)	410
BseLI	CCNNNNNNNGG	3 cut(s)	124, 125, 301
BseMII	CTCAG	3 cut(s)	116, 129, 191
BseNI	ACTGG	2 cut(s)	166, 172
BseRI	GAGGAG	2 cut(s)	378, 433
BseXI	GCAGC	3 cut(s)	49, 52, 216
BshFI	GGCC	3 cut(s)	314, 431, 512
BsiSI	CCGG	2 cut(s)	184, 428
BslFI	GGGAC	2 cut(s)	154, 346
BslI	CCNNNNNNNGG	3 cut(s)	124, 125, 301
BsmAI	GTCTC	3 cut(s)	180, 296, 373
BsmFI	GGGAC	2 cut(s)	154, 346
BsnI	GGCC	3 cut(s)	314, 431, 512
Bso31I	GGTCTC	1 cut(s)	373
Bsp143I	GATC	2 cut(s)	405, 503
Bsp1720I	GCTNAGC	1 cut(s)	219
BspACI	CCGC	3 cut(s)	153, 347, 513
BspANI	GGCC	3 cut(s)	314, 431, 512
BspCNI	CTCAG	3 cut(s)	115, 130, 190
BspHI	TCATGA	1 cut(s)	375
BspLI	GGNNCC	2 cut(s)	334, 505
BspPI	GGATC	2 cut(s)	498, 511
BspTNI	GGTCTC	1 cut(s)	373
BsrI	ACTGG	2 cut(s)	166, 172
BssECI	CCNNGG	2 cut(s)	182, 507
BssMI	GATC	2 cut(s)	405, 503
BssNI	GRCGYC	2 cut(s)	344, 492
BssT1I	CCWWGG	1 cut(s)	507
Bst2UI	CCWGG	1 cut(s)	433
BstACI	GRCGYC	2 cut(s)	344, 492
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	5 cut(s)	102, 138, 146, 177, 219
BstF5I	GGATG	1 cut(s)	410
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	2 cut(s)	408, 506
BstMAI	GTCTC	3 cut(s)	180, 296, 373
BstMBI	GATC	2 cut(s)	405, 503
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 210
BstNI	CCWGG	1 cut(s)	433
BstSCI	CCNGG	2 cut(s)	182, 431
BstV1I	GCAGC	3 cut(s)	49, 52, 216
BstV2I	GAAGAC	1 cut(s)	278
BstX2I	RGATCY	2 cut(s)	405, 503
BstYI	RGATCY	2 cut(s)	405, 503
BsuI	GTATCC	1 cut(s)	349
BsuRI	GGCC	3 cut(s)	314, 431, 512
BtgZI	GCGATG	1 cut(s)	228
BtsCI	GGATG	1 cut(s)	410
Cac8I	GCNNGC	1 cut(s)	60
CciI	TCATGA	1 cut(s)	375
CfoI	GCGC	1 cut(s)	137
Cfr13I	GGNCC	4 cut(s)	6, 186, 333, 435
CseI	GACGC	3 cut(s)	80, 352, 481
Csp6I	GTAC	1 cut(s)	323
CviAII	CATG	5 cut(s)	224, 316, 376, 401, 448
CviJI	RGCY	9 cut(s)	33, 62, 101, 181, 236, 314, 431, 441, 512
CviKI_1	RGCY	9 cut(s)	33, 62, 101, 181, 236, 314, 431, 441, 512
CviQI	GTAC	1 cut(s)	323
DdeI	CTNAG	5 cut(s)	102, 138, 146, 177, 219
DpnI	GATC	2 cut(s)	407, 505
DpnII	GATC	2 cut(s)	405, 503
Eco130I	CCWWGG	1 cut(s)	507
Eco31I	GGTCTC	1 cut(s)	373
Eco47I	GGWCC	4 cut(s)	6, 186, 333, 435
Eco47III	AGCGCT	1 cut(s)	136
Eco57I	CTGAAG	1 cut(s)	335
EcoRII	CCWGG	1 cut(s)	431
EcoT14I	CCWWGG	1 cut(s)	507
ErhI	CCWWGG	1 cut(s)	507
FaeI	CATG	5 cut(s)	227, 319, 379, 404, 451
FaiI	YATR	8 cut(s)	11, 20, 225, 261, 317, 377, 402, 449
FaqI	GGGAC	2 cut(s)	154, 346
FatI	CATG	5 cut(s)	223, 315, 375, 400, 447
Fnu4HI	GCNGC	5 cut(s)	63, 66, 205, 347, 513
FokI	GGATG	1 cut(s)	397
Fsp4HI	GCNGC	5 cut(s)	63, 66, 205, 347, 513
GlaI	GCGC	1 cut(s)	136
GluI	GCNGC	5 cut(s)	63, 66, 205, 347, 513
HaeII	RGCGCY	1 cut(s)	138
HaeIII	GGCC	3 cut(s)	314, 431, 512
HapII	CCGG	2 cut(s)	184, 428
HgaI	GACGC	3 cut(s)	80, 352, 481
HhaI	GCGC	1 cut(s)	137
Hin1I	GRCGYC	2 cut(s)	344, 492
Hin1II	CATG	5 cut(s)	227, 319, 379, 404, 451
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HinfI	GANTC	1 cut(s)	289
HpaII	CCGG	2 cut(s)	184, 428
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188I	TCNGA	1 cut(s)	84
Hpy188III	TCNNGA	3 cut(s)	109, 353, 376
Hpy8I	GTNNAC	1 cut(s)	475
Hpy99I	CGWCG	5 cut(s)	242, 346, 366, 491, 497
HpyAV	CCTTC	4 cut(s)	261, 271, 304, 393
HpyCH4V	TGCA	3 cut(s)	58, 158, 248
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 210
HpyF3I	CTNAG	5 cut(s)	102, 138, 146, 177, 219
Hsp92I	GRCGYC	2 cut(s)	344, 492
Hsp92II	CATG	5 cut(s)	227, 319, 379, 404, 451
HspAI	GCGC	1 cut(s)	135
Kzo9I	GATC	2 cut(s)	405, 503
LmnI	GCTCC	1 cut(s)	446
Lsp1109I	GCAGC	3 cut(s)	49, 52, 216
LweI	GCATC	2 cut(s)	59, 205
MaeIII	GTNAC	1 cut(s)	92
MalI	GATC	2 cut(s)	407, 505
MboI	GATC	2 cut(s)	405, 503
MboII	GAAGA	2 cut(s)	283, 509
MflI	RGATCY	2 cut(s)	405, 503
MluCI	AATT	2 cut(s)	418, 453
MlyI	GAGTC	1 cut(s)	298
MnlI	CCTC	5 cut(s)	133, 323, 399, 424, 454
MseI	TTAA	1 cut(s)	520
MspI	CCGG	2 cut(s)	184, 428
MspR9I	CCNGG	2 cut(s)	184, 433
MvaI	CCWGG	1 cut(s)	433
MwoI	GCNNNNNNNGC	2 cut(s)	30, 210
NciI	CCSGG	1 cut(s)	184
NdeII	GATC	2 cut(s)	405, 503
NlaIII	CATG	5 cut(s)	227, 319, 379, 404, 451
NlaIV	GGNNCC	2 cut(s)	334, 505
NmuCI	GTSAC	1 cut(s)	92
PagI	TCATGA	1 cut(s)	375
PcsI	WCGNNNNNNNCGW	2 cut(s)	477, 483
PflFI	GACNNNGTC	2 cut(s)	366, 491
PkrI	GCNGC	5 cut(s)	64, 67, 206, 348, 514
PleI	GAGTC	1 cut(s)	297
PpsI	GAGTC	1 cut(s)	297
Psp6I	CCWGG	1 cut(s)	431
PspGI	CCWGG	1 cut(s)	431
PspN4I	GGNNCC	2 cut(s)	334, 505
PspPI	GGNCC	4 cut(s)	6, 186, 333, 435
PsuI	RGATCY	2 cut(s)	405, 503
PsyI	GACNNNGTC	2 cut(s)	366, 491
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
SaqAI	TTAA	1 cut(s)	520
SatI	GCNGC	5 cut(s)	63, 66, 205, 347, 513
Sau3AI	GATC	2 cut(s)	405, 503
Sau96I	GGNCC	4 cut(s)	6, 186, 333, 435
SchI	GAGTC	1 cut(s)	298
ScrFI	CCNGG	2 cut(s)	184, 433
SetI	ASST	5 cut(s)	64, 108, 144, 385, 443
SfaNI	GCATC	2 cut(s)	59, 205
SinI	GGWCC	4 cut(s)	6, 186, 333, 435
Sse9I	AATT	2 cut(s)	418, 453
SsiI	CCGC	3 cut(s)	153, 347, 513
StyD4I	CCNGG	2 cut(s)	182, 431
StyI	CCWWGG	1 cut(s)	507
TaqI	TCGA	3 cut(s)	130, 361, 495
TaqII	GACCGA	1 cut(s)	128
TasI	AATT	2 cut(s)	418, 453
TauI	GCSGC	2 cut(s)	349, 515
Tru1I	TTAA	1 cut(s)	520
Tru9I	TTAA	1 cut(s)	520
TseFI	GTSAC	1 cut(s)	92
TseI	GCWGC	3 cut(s)	62, 65, 204
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	1 cut(s)	364
Tth111I	GACNNNGTC	2 cut(s)	366, 491
VpaK11BI	GGWCC	4 cut(s)	6, 186, 333, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.